sp|F4JYC8|PTM_ARATH ----> DDT domain-containing protein PTM
Intron 1 GTTCGAACTC ... CCAGGGGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 6 | 10 | 10 |
| A2 | 62.5 | 3 | 4 | 6 |
| A3 | 52.94 | 4 | 5 | 4 |
| A4 | 66.67 | 2 | 6 | 2 |
| A5 | 100 | 0 | 2 | 2 |
| A6 | 56.9 | 25 | 33 | 33 |
| A7 | 57.8 | 23 | 32 | 31 |
| A8 | 48.51 | 26 | 24 | 25 |
| A9 | 54.41 | 31 | 37 | 37 |
| A10 | 54.84 | 21 | 26 | 25 |
>TRINITY_DN42171_c1_g1_i5 from sample A9 / Example spliced isoformAATACCCTTTCCCCAATTCGACTTAACCTTTAAAGTCCCCTTTGTTACCCATAACCATACGCACTCTCGTCATAAAATAAAAAGTATGCAATGCAAACCCGTAATGCACTCTCAATCAAGGCGGATCATGCAACAAAGGCTGTAGGCTCTCATACACAGAGATGGTAGAGGAGAGGCGAAGGGAGAATGGAGATGATTTC
ACACTAGGCACCCACGTTGACAGCTGGTAGGAATATACTCAACTGGTATCCAATAGAGAAAAATCCATGCACATTGGCAGCTATTGAAAACGCTCAAGGAGAGAGGAAAATGTTAAGGAGACAACAAAAAGGGGCGTTACAGAGGTGACTGGAGAAGGGTTCGTTTCGTGGAAGAGGCAACATCCACACGGGATACCAGG
AAATCAACTTATCTCTCATTTTGTATCAGATCTCAAGAACTTCATTGAACCTCCTCTTCCCATCTGCTTTGGTACAGGAAACCGTCTTTCTTTTCAAATAGCAGGGATTTCTTCCAGTCAATCCAGATGCACCAGAAGAAAAGTTCATTTTCGCATCTACATTTGTATCTTGTTCAAAGTTTACCCGCATGTTGATTTTT
GTTCGAACTTCCTCGGCCTCCATGTTTTCATCACAAATAAACTGAAAAATTATTAGCTTTGTGGAAGGAAATATGGTGTAGTACTTGACATTCAAAAGCTTTAAATGAGAAATTTTCTATCCCAGCTGACTACTGAAACCTTGAGTTGAAATATATTCTACCAGATAAACTGGCCATGTTACTACCTCTAGGAAATTCAA
TCAAGTTTCCTAAAACATTTTGATGCCTTATCATTTCCCTCAGTTGAAAGTGTTTTTAGATGACACCTCACATCCTTTAGAATACAAATGTGCACATTGTCTAGAAGTGTATTTGCAAACTTATAGTTTAAAGCTCCCACAAAATGATGAAGAGTGAAGGGACTAAAAAATAACAAATTGTTGAATCTTCTGAGATAGCT
ATACACAGAAAATAGGCCAGGAACTCAACTCTCTGGTATAGAGAGATCTCCCGAAGACTGGGAAAGGTTTCATTGGAGGCAGAGGAAAATCAATTGCTTTTGATGTCAATAACAAGACTTGGCCTGAATCTTCAGTATCTGAAGCATAATTGCTAGAACAACAACTATATATGCAAAAATGTAGATATTATTGAAGCACA
TGAAAGATGCAGGGTATGTACAACTTGGATGGAGGGACTGAAGGCTCCCTGGCTCTTTAGTGTCTTATGCCTGCTGAACAACCTGTGCAAACTGGGCAGTAACGAGCCCCTCAAATGCCATGAATTTAGGGCATAAAAGCTAATGAAAAAGACTAAAATATGCCTCCAAGTGAGAGAGGCTGACTGCTATAGGTGAAATT
ACAGGTCTACATGAATTTCTGAAGATGAATTGGCCCTCTGTATCCTTCAAGTGCTGACTGGGTACATCAATCCCCTGGCTGGAAATAAGCAAACACGACCTACAAATATTTGTGGAAATATTTCATGCACCTAGTTGTTGCTGTGTTTTTCCAGAGGAGACAATTTCCTACAGGCAGAGGGTTACTGTATTTT
>TRINITY_DN42171_c1_g1_i3 from sample A9 / Example unspliced isoform:AATACCCTTTCCCCAATTCGACTTAACCTTTAAAGTCCCCTTTGTTACCCATAACCATACGCACTCTCGTCATAAAATAAAAAGTATGCAATGCAAACCCGTAATGCACTCTCAATCAAGGCGGATCATGCAACAAAGGCTGTAGGCTCTCATACACAGAGATGGTAGAGGAGAGGCGAAGGGAGAATGGAGATGATTTC
ACACTAGGCACCCACGTTGACAGCTGGTAGGAATATACTCAACTGGTATCCAATAGAGAAAAATCCATGCACATTGGCAGCTATTGAAAACGCTCAAGGAGAGAGGAAAATGTTAAGGAGACAACAAAAAGGGGCGTTACAGAGGTGACTGGAGAAGGGTTCGTTTCGTGGAAGAGGCAACATCCACACGGGATACCAGG
AAATCAACTTATCTCTCATTTTGTATCAGgttcgaactcagatccagggggagATCTCAAGAACTTCATTGAACCTCCTCTTCCCATCTGCTTTGGTACAGGAAACCGTCTTTCTTTTCAAATAGCAGGGATTTCTTCCAGTCAATCCAGATGCACCAGAAGAAAAGTTCATTTTCGCATCTACATTTGTATCTTGTTCA
AAGTTTACCCGCATGTTGATTTTTGTTCGAACTTCCTCGGCCTCCATGTTTTCATCACAAATAAACTGAAAAATTATTAGCTTTGTGGAAGGAAATATGGTGTAGTACTTGACATTCAAAAGCTTTAAATGAGAAATTTTCTATCCCAGCTGACTACTGAAACCTTGAGTTGAAATATATTCTACCAGATAAACTGGCCA
TGTTACTACCTCTAGGAAATTCAATCAAGTTTCCTAAAACATTTTGATGCCTTATCATTTCCCTCAGTTGAAAGTGTTTTTAGATGACACCTCACATCCTTTAGAATACAAATGTGCACATTGTCTAGAAGTGTATTTGCAAACTTATAGTTTAAAGCTCCCACAAAATGATGAAGAGTGAAGGGACTAAAAAATAACAA
ATTGTTGAATCTTCTGAGATAGCTATACACAGAAAATAGGCCAGGAACTCAACTCTCTGGTATAGAGAGATCTCCCGAAGACTGGGAAAGGTTTCATTGGAGGCAGAGGAAAATCAATTGCTTTTGATGTCAATAACAAGACTTGGCCTGAATCTTCAGTATCTGAAGCATAATTGCTAGAACAACAACTATATATGCAA
AAATGTAGATATTATTGAAGCACATGAAAGATGCAGGGTATGTACAACTTGGATGGAGGGACTGAAGGCTCCCTGGCTCTTTAGTGTCTTATGCCTGCTGAACAACCTGTGCAAACTGGGCAGTAACGAGCCCCTCAAATGCCATGAATTTAGGGCATAAAAGCTAATGAAAAAGACTAAAATATGCCTCCAAGTGAGAG
AGGCTGACTGCTATAGGTGAAATTACAGGTCTACATGAATTTCTGAAGATGAATTGGCCCTCTGTATCCTTCAAGTGCTGACTGGGTACATCAATCCCCTGGCTGGAAATAAGCAAACACGACCTACAAATATTTGTGGAAATATTTCATGCACCTAGTTGTTGCTGTGTTTTTCCAGAGGAGACAATTTCCTACAGGCA
GAGGGTTACTGTATTTT
Intron 2 GTGTGCTGAC ... TTTGGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.5 | 22 | 4 | 58 |
| A2 | 80 | 11 | 4 | 44 |
| A3 | 82 | 9 | 7 | 41 |
| A4 | 88.24 | 6 | 5 | 45 |
| A5 | 80.65 | 6 | 3 | 25 |
| A6 | 39.22 | 31 | 14 | 20 |
| A7 | 37.31 | 42 | 27 | 25 |
| A8 | 50.91 | 27 | 12 | 28 |
| A9 | 42.03 | 40 | 20 | 29 |
| A10 | 44.83 | 32 | 16 | 26 |
>TRINITY_DN42171_c1_g1_i7 from sample A9 / Example spliced isoformAATACCCTTTCCCCAATTCGACTTAACCTTTAAAGTCCCCTTTGTTACCCATAACCATACGCACTCTCGTCATAAAATAAAAAGTATGCAATGCAAACCCGTAATGCACTCTCAATCAAGGCGGATCATGCAACAAAGGCTGTAGGCTCTCATACACAGAGATGGTAGAGGAGAGGCGAAGGGAGAATGGAGATGATTTC
ACACTAGGCACCCACGTTGACAGCTGGTAGGAATATACTCAACTGGTATCCAATAGAGAAAAATCCATGCACATTGGCAGCTATTGAAAACGCTCAAGGAGAGAGGAAAATGTTAAGGAGACAACAAAAAGGGGCGTTACAGAGGTGACTGGAGAAGGGTTCGTTTCGTGGAAGAGGCAACATCCACACGGGATACCAGG
AAATCAACTTATCTCTCATTTTGTATCAGGTTCGAACTCAGATCCAGGGGGAGGAAACCGTCTTTCTTTTCAAATAGCAGGGATTTCTTCCAGTCAATCCAGATGCACCAGAAGAAAAGTTCATTTTCGCATCTACATTTGTATCTTGTTCAAAGTTTACCCGCATGTTGATTTTTGTTCGAACTTCCTCGGCCTCCATG
TTTTCATCACAAATAAACTGAAAAATTATTAGCTTTGTGGAAGGAAATATGGTGTAGTACTTGACATTCAAAAGCTTTAAATGAGAAATTTTCTATCCCAGCTGACTACTGAAACCTTGAGTTGAAATATATTCTACCAGATAAACTGGCCATGTTACTACCTCTAGGAAATTCAATCAAGTTTCCTAAAACATTTTGAT
GCCTTATCATTTCCCTCAGTTGAAAGTGTTTTTAGATGACACCTCACATCCTTTAGAATACAAATGTGCACATTGTCTAGAAGTGTATTTGCAAACTTATAGTTTAAAGCTCCCACAAAATGATGAAGAGTGAAGGGACTAAAAAATAACAAATTGTTGAATCTTCTGAGATAGCTATACACAGAAAATAGGCCAGGAAC
TCAACTCTCTGGTATAGAGAGATCTCCCGAAGACTGGGAAAGGTTTCATTGGAGGCAGAGGAAAATCAATTGCTTTTGATGTCAATAACAAGACTTGGCCTGAATCTTCAGTATCTGAAGCATAATTGCTAGAACAACAACTATATATGCAAAAATGTAGATATTATTGAAGCACATGAAAGATGCAGGGTATGTACAAC
TTGGATGGAGGGACTGAAGGCTCCCTGGCTCTTTAGTGTCTTATGCCTGCTGAACAACCTGTGCAAACTGGGCAGTAACGAGCCCCTCAAATGCCATGAATTTAGGGCATAAAAGCTAATGAAAAAGACTAAAATATGCCTCCAAGTGAGAGAGGCTGACTGCTATAGGTGAAATTACAGGTCTACATGAATTTCTGAAG
ATGAATTGGCCCTCTGTATCCTTCAAGTGCTGACTGGGTACATCAATCCCCTGGCTGGAAATAAGCAAACACGACCTACAAATATTTGTGGAAATATTTCATGCACCTAGTTGTTGCTGTGTTTTTCCAGAGGAGACAATTTCCTACAGGCAGAGGGTTACTGTATTTT
>TRINITY_DN42171_c1_g1_i4 from sample A9 / Example unspliced isoform:AATACCCTTTCCCCAATTCGACTTAACCTTTAAAGTCCCCTTTGTTACCCATAACCATACGCACTCTCGTCATAAAATAAAAAGTATGCAATGCAAACCCGTAATGCACTCTCAATCAAGGCGGATCATGCAACAAAGGCTGTAGGCTCTCATACACAGAGATGGTAGAGGAGAGGCGAAGGGAGAATGGAGATGATTTC
ACACTAGGCACCCACGTTGACAGCTGGTAGGAATATACTCAACTGGTATCCAATAGAGAAAAATCCATGCACATTGGCAGCTATTGAAAACGCTCAAGGAGAGAGGAAAATGTTAAGGAGACAACAAAAAGGGGCGTTACAGAGGTGACTGGAGAAGGGTTCGTTTCGTGGAAGAGGCAACATCCACACGGGATACCAGG
AAATCAACTTATCTCTCATTTTGTATCAGGTTCGAACTCAGATCCAGGGGGAGgtgtgctgactaaaacccactgaatatatgatctcaagaacttcattgaacctcctcttcccatctgctttggtacagGAAACCGTCTTTCTTTTCAAATAGCAGGGATTTCTTCCAGTCAATCCAGATGCACCAGAAGAAAAGTTC
ATTTTCGCATCTACATTTGTATCTTGTTCAAAGTTTACCCGCATGTTGATTTTTGTTCGAACTTCCTCGGCCTCCATGTTTTCATCACAAATAAACTGAAAAATTATTAGCTTTGTGGAAGGAAATATGGTGTAGTACTTGACATTCAAAAGCTTTAAATGAGAAATTTTCTATCCCAGCTGACTACTGAAACCTTGAGT
TGAAATATATTCTACCAGATAAACTGGCCATGTTACTACCTCTAGGAAATTCAATCAAGTTTCCTAAAACATTTTGATGCCTTATCATTTCCCTCAGTTGAAAGTGTTTTTAGATGACACCTCACATCCTTTAGAATACAAATGTGCACATTGTCTAGAAGTGTATTTGCAAACTTATAGTTTAAAGCTCCCACAAAATG
ATGAAGAGTGAAGGGACTAAAAAATAACAAATTGTTGAATCTTCTGAGATAGCTATACACAGAAAATAGGCCAGGAACTCAACTCTCTGGTATAGAGAGATCTCCCGAAGACTGGGAAAGGTTTCATTGGAGGCAGAGGAAAATCAATTGCTTTTGATGTCAATAACAAGACTTGGCCTGAATCTTCAGTATCTGAAGCA
TAATTGCTAGAACAACAACTATATATGCAAAAATGTAGATATTATTGAAGCACATGAAAGATGCAGGGTATGTACAACTTGGATGGAGGGACTGAAGGCTCCCTGGCTCTTTAGTGTCTTATGCCTGCTGAACAACCTGTGCAAACTGGGCAGTAACGAGCCCCTCAAATGCCATGAATTTAGGGCATAAAAGCTAATGA
AAAAGACTAAAATATGCCTCCAAGTGAGAGAGGCTGACTGCTATAGGTGAAATTACAGGTCTACATGAATTTCTGAAGATGAATTGGCCCTCTGTATCCTTCAAGTGCTGACTGGGTACATCAATCCCCTGGCTGGAAATAAGCAAACACGACCTACAAATATTTGTGGAAATATTTCATGCACCTAGTTGTTGCTGTGT
TTTTCCAGAGGAGACAATTTCCTACAGGCAGAGGGTTACTGTATTTT