sp|Q9SS94|CD48C_ARATH ----> Cell division control protein 48 homolog C

Intron 1 GTAAATGTTA ... TTATATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	28.07	41	4	16
A2	34.09	29	0	15
A3	29.89	61	0	26
A4	18.92	30	0	7
A5	22.22	28	1	8
A6	32.85	92	0	45
A7	37.36	114	0	68
A8	34.19	102	0	53
A9	26.13	82	0	29
A10	27.08	35	0	13

>TRINITY_DN112910_c0_g1_i3 from sample A1 / Example spliced isoform

ATCGGGCCCAAACTCGTGCAGGATGAGGCAAAGAGCTCGCTCTGCGCCGCGTAGCGGCCTCCACCCTTCATTCTTCGACCGCCTGATAGTCCCGAGACTAGAACATTACTCCATCAACCACGACCTCCTCGACCTCGACTCGGTCGTCGACTATCTCAGAACAAATTACCGCGAGTACAGACGCCACAAAGAAGATCCTT
TCAGAAAAACTGTGCTGCGGGCCATTCGAACCCTTCAATCATCTAAGACCAACGACTATGAAACACCCAAGAATACCAAAAGAAATACCAAGAGACTTGATCCCGTGGAGGAGAAATTGCAGCAAAAGGAGGCCGAGTATCTAAGCCAGAGAAATGGGCAGGGCAGCGAGACTTCGGAATCGGAGGAGAGCAGCTCTGGC
AGCGACACTCCAGGAGATTCGAACCCGAGACCCTTCTCGGATCTCATGAATTCTGTTCTCAGAACAAGCTATAATGCTAATGCCAGTCCCAGCCCTAGCACTAACCCTAACCCTAACCCTAACCTGAACCCAATTCCAGAGCCCTCCGAGAGCAAAAGCACGCAGGAGGATGGGGAGGTCGGTGGCTCAACCTCGGAATT
GCTCAAAGCTACTGTTGAGCATAATGCCGATAACAAGTTTGTTGCCGGCAAAATGGAGATTGATACCGAGCTCGGCAGTGAAAACCAGAAGAAAATCCTGGATTATGCAGGAGGAAGGCATAAACCCAAAGCAGGGTTTAAGAAGAAAACACAAGAGAAAATCTCGGATGCTGTTGTGGATAATCGAGTATCGTTTAAGG
ACTTGGGAGGAATGGATGAAGTGATTAATGAAATCATGGAGGTTATTTATCCTCTGTATCATCCACAGATATATCCTTGGTTGGGAGTTCAGCCCATCAAGGGTATTTTGTTGCACGGGCCACCAGGTTGCGGGAAAACCAAGCTGGCACATGCCATAGCTAGCGAGACGGGCGTTCCTTTCTACAAGATTTCGGCTACT
GAAGTGGTTTCTGGAGTCTCAGGTGAGTCAGAGGAGAATATTCGTGCTTTGTTTATGAAAGCATCAAAAACATCACCCTCCATCATATTTATAGATGAGATTGATGCTATTAGTGCTAAGAGAGAAACATTACAGAGGGAGATGGAACGTCGTATTGTGACACAACTTTTAACCTGCATGGATGAATCGCATCAGACTAT
AAGATCTGGTGACCAAGGCTCTGACACAGAAACATCTAGAAATAAGACTTCTGGCCATATCCTTGTGATTGGTGCAACAAATAGACCCGATTCTCTAGATCCTGCACTCCGAAGGCCCGGCCGCTTTGATCGTGAAATTTTTCTAGGTGTTCCAGATGAAAATGCAAGGGCTGCAATCTTGTCAGTACTTGCAGTTGGAT
TAAGATTAGAAGGTTCATTTGATTTTAAAAAGGTTGCAAAATGCACACCTGGTTTTGTAGGTGCAGATTTAGCAGCATTAACTAGGGAAGCAGCTTCAGTTGCAATAAAGAGAATAATAGCAAGCAGGAATTCTCAGAATCCTTCAGAATGCGAGGGTATACAAATATGTGAAGAGGTATGGTGGAAGAAGGCATGGACA
CAGGAAGAAATGATCAATCTTAGTATTACAATGGCAGATTTTGAGGAAGCTGCATCAAAGGTGCAGCCCTCGACTCGAAGGGAAGGTTTTTCTACCATCCCGAATGTTAAATGGGATGATGTTGGAGCTCTCAGTTCTTTGCGCAAGGACTTTGATCTTTACATTGTTAGACGGATCAAACACCCCGATGATTATGAGAC
ACTTGGTATGGATCTGGATAATGGGTTTTTGCTGTATGGACCACCAGGTTGTGGTAAAACTCTGGTTGCAAAGGCTGTAGCCAATGAAGCTGGGGCCAATTTTATACACATAAAGGGTCCAGAACTTTTAAACAAATATGTGGGAGAAAGTGAGCTGGCAGTCCGAACAATATTTACTCGTGCACGCACATGCTCTCCCT
GCATACTTTTTTTTGATGAGGTTGATGCCTTAACAACTAGACGTGGGAAAGATGGTGGGTGGGTTGTAGAGCGTCTCTTAAATCAGCTCCTCATAGAGATGGATGGAGCAGAAAAGCGAAAGGGTGTTTTTGTAATTGGAGCAACAAACAGGCCAGAAGTAATGGATCCAGCAGTTTTAAGGCCAGGACGATTTGGCAAA
TTACTTCTTGTTCCTCTGCCAGATGCAGAGGGTCGAGTTTCAATCTTAAAGGCCCTTGTCCGAAATAAACCTCTGGCTACAGATGTGGATTTGAATTACATTGGCCACAGTCAGGCTTGTGAGAACTTCAGTGGTGCTGATCTTGCTGCTCTTGTCAATGAAGCTTGCATGTCTGCATTGCAAGAAAAAATCACAGCGGC
CTCAGAGGCTGATTCAGACATCAGGCAAGATGCTTTGTCAGTTCATTTGTCACACTTTGAGCAAGCTTTCAACCGAGTCAGGCCTTCTGTTTCTAAAGAGCAACGCCACTATTATGATAATGTATTTCAAAAATTCACGAGGGTTTCAGATAAGCAGTAAAGTAAACGTCTTGCAAGCTTCCTGTAGATTTTCAGAAGGC
ATCTTTGCGCCACTGGCTAGATTATCAATTTTCGGCCACAAGAGCACAAAGGAGAGGGATGGTGTTAACGATGAGTAAAGAGGCGGATATCATTTGTATTATCTTTTATATTAACTCTATTGAATATGCTGATCCAAAATTATCTCATATTAGGTTATTGTACCTTTTTCTTTGTATGCGGTTGTTGCTTTTCACTATTG
AAGTAGCAGGATTCCATGTACACATGGTTGCTCCTAAATATGAATGTTGGATTCCATGCCTGTTATCAGGAAATATGCTTGGGAACTGCTAACATTACAGTTTTTGTTCATAAATCCACATTCTGATCTCTAAATCTGATTCTTTTTGGTATGATTTTTTATAATAAGAAAGCTGCAG

>TRINITY_DN112910_c0_g1_i4 from sample A1 / Example unspliced isoform:

TAATTCTTGCCTGATTTACAATGGTGGCATTTTTGCTCATCTGTTTAGTGTAGCTCCTCATAGAGATGGATGGAGCAGAAAAGCGAAAGGGTGTTTTTGTAATTGGAGCAACAAACAGgtaaatgttatttataatgaaaatatatatagatattatacagtgagaaattgaacagcttctgcttgtatttattcgttat
atgcagGCCAGAAGTAATGGATCCAGCAGTTTTAAGGCCAGGACGATTTGGCAAATTACTTCTTGTTCCTCTGCCAGATGCAGAGGGTCGAGTTTCAATCTTAAAGGCCCTTGTCCGAAATAAACCTCTGGCTACAGATGTGGATTTGAATTACATTGGCCACAGTCAGGCTTGTGAGAACTTCAGTGGTGCTGATCTTG
CTGCTCTTGTCAATGAAGCTTGCATGTCTGCATTGCAAGAAAAAATCACAGCGGCCTCAGAGGCTGATTCAGACATCAGGCAAGATGCTTTGTCAGTTCATTTGTCACACTTTGAGCAAGCTTTCAACCGAGTCAGGCCTTCTGTTTCTAAAGAGCAACGCCACTATTATGATAATGTATTTCAAAAATTCACGAGGGTT
TCAGATAAGCAGTAAAGTAAACGTCTTGCAAGCTTCCTGTAGATTTTCAGAAGGCATCTTTGCGCCACTGGCTAGATTATCAATTTTCGGCCACAAGAGCACAAAGGAGAGGGATGGTGTTAACGATGAGTAAAGAGGCGGATATCATTTGTATTATCTTTTATATTAACTCTATTGAATATGCTGATCCAAAATTATCT
CATATTAGGTTATTGTACCTTTTTCTTTGTATGCGGTTGTTGCTTTTCACTATTGAAGTAGCAGGATTCCATGTACACATGGTTGCTCCTAAATATGAATGTTGGATTCCATGCCTGTTATCAGGAAATATGCTTGGGAACTGCTAACATTACAGTTTTTGTTCATAAATCCACATTCTGATCTCTAAATCTGATTCTTT
TTGGTATGATTTTTTATAATAAGAAAGCTGCAG