sp|Q8RWV8|U1165_ARATH ----> U11/U12 small nuclear ribonucleoprotein 65 kDa protein
Intron 1 GTATGTGAAA ... ATTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.7 | 15 | 37 | 39 |
| A2 | 69.86 | 11 | 26 | 25 |
| A3 | 69.77 | 12 | 33 | 22.4 |
| A4 | 58.49 | 11 | 20 | 11 |
| A5 | 56.76 | 8 | 10 | 11 |
| A6 | 80 | 4 | 20 | 12 |
| A7 | 60 | 25 | 46 | 29 |
| A8 | 61.38 | 28 | 50 | 39 |
| A9 | 70.65 | 27 | 68 | 62 |
| A10 | 68.94 | 25 | 62 | 49 |
>TRINITY_DN110324_c7_g1_i7 from sample A3 / Example spliced isoformGATGGATATAGGCGAGGATGAGTCCAACTAGAATTGCCCTTTGTCTACACGACCAAGATGGGCTTTCTATTGTTGCGAATCCCCACGAGGTTTTCATAAAAGTTTCCGCGCGTAACAAATGTGGGACAAACAATTACCATTTTCTTTCCCATAACACGCTCTCTGTTCGTCTGGCGGAGCGAAATGGTGAACTTCTACGA
AGATGACGACCCAGAAGGCGAGGCCCCTGTCGTCAAAACTCAGGCCGAACTCACGCTCCAAAATCTCCTTCAGAAGCAGCTTTCAACAGCTCACAGGTTGGAGCGAGTTGAATTTGAAGAGGTCACACAGAACATGTATTGTATAGGCCATGCATCTTCTGGGGTAGGTACTCTTGCTCAGTTCCGCGAAAATGAACTTC
GAAAAGAGGACAATGATCATCAACAGCCTGGCAACAATCAAGCACACCCACAAAAGTTCCTTAAGGATCTGAACAAGCAAAAGAGGTATGGGCCACACCCAGCCTTTCTTCATCATGCATTGGAAGAGGAGCAAGAGCGACGGAAAGGACACCACTCAAATCAGGTCAGAGAAAGTGGTGGTAGGCACCAAAATTGGAGT
AGGCACTCGGAAGAGCTGGAGGCATCTCTCATGAGAGGGAAGGACAAATTGAAAGCAATTTCTCATCTGTCTGCTGGAGAGAGTGCTTGCAGGAGGCCATTATTAAATAATGTTGAACTAAGCGAGATGTGCAAAGGAAGTACACCTCAGGACCGTGCCCGTGGCAAGGCTGAGAAGGAATTCACACGTTCAGCAGCAGA
AGTATTTTCTAGTCCAGCTCCTGATGTACTTGACTTACATGCATACCTGAATGAAAAACATTGGGAACAAGAAAACAATGATACAGAATTGAATAAACCTCCAATAAAATGGAGATTTTATCGAACAAGCTATCAGAAGATGCGATCCGGGAAATGCAAGGTGGAAAATTTGCTAATTATGCACCTGGTATTCCTTCTCA
TATCCTCTATATCAAGAACCTTTCTCCTGATGTAAAAGAAACAGACCTAGCAGCTTTATATATACGGTTCCAAAGTCCTGGAAAGAAGTTACTCTTCCGTCTCATGCAGCATGGTCGAATGAAGGGACAGGCTTTTGTTACATTTCCTGATAAAGACACAGCAACGCTAGCTCTGCAGTTAACAAATGGTTTCAGATTGA
AGGGCAAACCAGTAGTTATTCAGTATGGTCGTGCAGTTAGGGAGAATGGCAAGTCTACAGATTAGACAAAAATGATGAGGCAGGCCTTACATATGGAATGGACAGTTCATGTAAAATCATATGGCTGGATCTGAATTTAAATGATACGATTAATATAGCCTAGGAATTATACAACAACTAGCAAGGGAAAGATATATGTG
GATGTGTCAATCTGCTTAGTGGAGGATATATTAAATACATTCTCAGAATTGCACAATGGATAGGCATGGGAAAGGTCGATTGATCATGTGTACAACTGCACATTTAAAGGATTTGATCCATACAACCTAAGAATTGTAGGAAAAACAGACCTGGGAAAGATCAGCATGGCCGAAACAATCTTGTTTTGATATTTATTTCT
TAATGAATGTCCCAATCAGCTTGACCATGCACAGGAAGAGATTTCACAGTTCTTGGCAAGGATTCATGCCACAAAGATCTAATAATGTATACAAGGTTGTATCCCTGAAGCAATTACAATAAAGCTACAAGATAACATTTTATATTGCCTCCACACAGCAGATTAACATTATTTGTTTTGCAACAATGTGTGAGTCATGG
CATGCAAATCTTTATTTTCAGCATAATCTATCAGGATTAAGTTTTAAGATTACCCTGGTGGCACACTTTCCATTGCACACTGTTTTACTAATCCGCCCCATTGACCTATTTGTGGTCATTTGTTGGACATTAATAACATTGTCTTATCTTCCTCAGTAGAGGTAATGTATGCCTACAGCATTTTAATTTTAATTTTATCA
AAAACAAAAACATTGATGTCTGACAATGGAAGCTTTCTTAGGATTAACAATAAAAACGCTCAGCCAAATGATGTACAACTAGCAACTCCTGTGCATATAAATATGGCGTTTTTTACAGGGTTTACATGCAAAGGACGGTGTCAACTGTTCCTGTTATGATTACTTCCAAGGTGGTGGTTTTATTGTGTCCAGACAAAATC
AAATTTTTTGTTAATTTTTGGGAGTAATTGCTGAATTCACAGGGGAAGCTTGAATCTTGTTGAAGACTAATATTTTGTATGCTTCTATACAAGCTACTGCCTTCAAATATAAAATCACTCATCTAATGTGTGAGTAGTGCCACAAGTTGAAGTTTTTGGGTGCAATCTTATAGAAACTATTTCGAAATACTATATTGCTG
GTCAATCCAGTGCTTTTTATTCAGTGTCTCAAGTAATATTATTGGTTGTTTGTTGTAAGCGCCTGGAAGCAACGTTTAATCAAGCAACTTTCATTAGAAATGGGAGTGTTACATGTGATTTCAATTAGTTAAGCAAAAAGAGGTTAGTTTTATTCTTGAATTCAAATGTTCTAAAAACCAAATTTTCACAAGGAC
>TRINITY_DN110324_c7_g1_i3 from sample A3 / Example unspliced isoform:GATGGATATAGGCGAGGATGAGTCCAACTAGAATTGCCCTTTGTCTACACGACCAAGATGGGCTTTCTATTGTTGCGAATCCCCACGAGGTTTTCATAAAAGTTTCCGCGCGTAACAAATGTGGGACAAACAATTACCATTTTCTTTCCCATAACACGCTCTCTGTTCGTCTGGCGGAGCGAAATGGTGAACTTCTACGA
AGATGACGACCCAGAAGGCGAGGCCCCTGTCGTCAAAACTCAGGCCGAACTCACGCTCCAAAATCTCCTTCAGAAGCAGCTTTCAACAGCTCACAGGTTGGAGCGAGTTGAATTTGAAGAGGTCACACAGAACATGTATTGTATAGGCCATGCATCTTCTGGGGTAGGTACTCTTGCTCAGTTCCGCGAAAATGAACTTC
GAAAAGAGGACAATGATCATCAACAGCCTGGCAACAATCAAGCACACCCACAAAAGTTCCTTAAGGATCTGAACAAGCAAAAGAGGTATGGGCCACACCCAGCCTTTCTTCATCATGCATTGGAAGAGGAGCAAGAGCGACGGAAAGGACACCACTCAAATCAGGTCAGAGAAAGTGGTGGTAGGCACCAAAATTGGAGT
AGGCACTCGGAAGAGCTGGAGGCATCTCTCATGAGAGGGAAGGACAAATTGAAAGCAATTTCTCATCTGTCTGCTGGAGAGAGTGCTTGCAGGAGGCCATTATTAAATAATGTTGAACTAAGCGAGATGTGCAAAGGAAGTACACCTCAGGACCGTGCCCGTGGCAAGGCTGAGAAGGAATTCACACGTTCAGCAGCAGA
AGTATTTTCTAGTCCAGCTCCTGATGTACTTGACTTACATGCATACCTGAATGAAAAACATTGGGAACAAGAAAACAATGATACAGAATTGAATAAACCTCCAATAgtatgtgaaattttgaaagtaaacattacagaatgcaaagcagaattgccagtgccaaacctaagtaatttcactggagacattatttcagAAA
TGGAGATTTTATCGAACAAGCTATCAGAAGATGCGATCCGGGAAATGCAAGGTGGAAAATTTGCTAATTATGCACCTGGTATTCCTTCTCATATCCTCTATATCAAGAACCTTTCTCCTGATGTAAAAGAAACAGACCTAGCAGCTTTATATATACGGTTCCAAAGTCCTGGAAAGAAGTTACTCTTCCGTCTCATGCAG
CATGGTCGAATGAAGGGACAGGCTTTTGTTACATTTCCTGATAAAGACACAGCAACGCTAGCTCTGCAGTTAACAAATGGTTTCAGATTGAAGGGCAAACCAGTAGTTATTCAGTATGGTCGTGCAGTTAGGGAGAATGGCAAGTCTACAGATTAGACAAAAATGATGAGGCAGGCCTTACATATGGAATGGACAGTTCA
TGTAAAATCATATGGCTGGATCTGAATTTAAATGATACGATTAATATAGCCTAGGAATTATACAACAACTAGCAAGGGAAAGATATATGTGGATGTGTCAATCTGCTTAGTGGAGGATATATTAAATACATTCTCAGAATTGCACAATGGATAGGCATGGGAAAGGTCGATTGATCATGTGTACAACTGCACATTTAAAG
GATTTGATCCATACAACCTAAGAATTGTAGGAAAAACAGACCTGGGAAAGATCAGCATGGCCGAAACAATCTTGTTTTGATATTTATTTCTTAATGAATGTCCCAATCAGCTTGACCATGCACAGGAAGAGATTTCACAGTTCTTGGCAAGGATTCATGCCACAAAGATCTAATAATGTATACAAGGTTGTATCCCTGAA
GCAATTACAATAAAGCTACAAGATAACATTTTATATTGCCTCCACACAGCAGATTAACATTATTTGTTTTGCAACAATGTGTGAGTCATGGCATGCAAATCTTTATTTTCAGCATAATCTATCAGGATTAAGTTTTAAGATTACCCTGGTGGCACACTTTCCATTGCACACTGTTTTACTAATCCGCCCCATTGACCTAT
TTGTGGTCATTTGTTGGACATTAATAACATTGTCTTATCTTCCTCAGTAGAGGTAATGTATGCCTACAGCATTTTAATTTTAATTTTATCAAAAACAAAAACATTGATGTCTGACAATGGAAGCTTTCTTAGGATTAACAATAAAAACGCTCAGCCAAATGATGTACAACTAGCAACTCCTGTGCATATAAATATGGCGT
TTTTTACAGGGTTTACATGCAAAGGACGGTGTCAACTGTTCCTGTTATGATTACTTCCAAGGTGGTGGTTTTATTGTGTCCAGACAAAATCAAATTTTTTGTTAATTTTTGGGAGTAATTGCTGAATTCACAGGGGAAGCTTGAATCTTGTTGAAGACTAATATTTTGTATGCTTCTATACAAGCTACTGCCTTCAAATA
TAAAATCACTCATCTAATGTGTGAGTAGTGCCACAAGTTGAAGTTTTTGGGTGCAATCTTATAGAAACTATTTCGAAATACTATATTGCTGGTCAATCCAGTGCTTTTTATTCAGTGTCTCAAGTAATATTATTGGTTGTTTGTTGTAAGCGCCTGGAAGCAACGTTTAATCAAGCAACTTTCATTAGAAATGGGAGTGT
TACATGTGATTTCAATTAGTTAAGCAAAAAGAGGTTAGTTTTATTCTTGAATTCAAATGTTCTAAAAACCAAATTTTCACAAGGAC
Intron 2 GTATTTTCTA ... ATTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 24.7 | 39 |
| A2 | 85.7 | 4 | 23.7 | 25 |
| A3 | 78.06 | 8 | 35.3 | 22.7 |
| A4 | 76.96 | 5 | 22.7 | 11 |
| A5 | 100 | 0 | 8.3 | 11 |
| A6 | 76.77 | 4 | 15 | 12 |
| A7 | 80.6 | 10 | 54.3 | 29 |
| A8 | 83.06 | 9 | 50.7 | 39 |
| A9 | 75 | 17 | 41 | 62 |
| A10 | 74.92 | 17 | 54.3 | 49 |
>TRINITY_DN110324_c7_g1_i1 from sample A3 / Example spliced isoformGATGGATATAGGCGAGGATGAGTCCAACTAGAATTGCCCTTTGTCTACACGACCAAGATGGGCTTTCTATTGTTGCGAATCCCCACGAGGTTTTCATAAAAGTTTCCGCGCGTAACAAATGTGGGACAAACAATTACCATTTTCTTTCCCATAACACGCTCTCTGTTCGTCTGGCGGAGCGAAATGGTGAACTTCTACGA
AGATGACGACCCAGAAGGCGAGGCCCCTGTCGTCAAAACTCAGGCCGAACTCACGCTCCAAAATCTCCTTCAGAAGCAGCTTTCAACAGCTCACAGGTTGGAGCGAGTTGAATTTGAAGAGGTCACACAGAACATGTATTGTATAGGCCATGCATCTTCTGGGGTAGGTACTCTTGCTCAGTTCCGCGAAAATGAACTTC
GAAAAGAGGACAATGATCATCAACAGCCTGGCAACAATCAAGCACACCCACAAAAGTTCCTTAAGGATCTGAACAAGCAAAAGAGGTATGGGCCACACCCAGCCTTTCTTCATCATGCATTGGAAGAGGAGCAAGAGCGACGGAAAGGACACCACTCAAATCAGGTCAGAGAAAGTGGTGGTAGGCACCAAAATTGGAGT
AGGCACTCGGAAGAGCTGGAGGCATCTCTCATGAGAGGGAAGGACAAATTGAAAGCAATTTCTCATCTGTCTGCTGGAGAGAGTGCTTGCAGGAGGCCATTATTAAATAATGTTGAACTAAGCGAGATGTGCAAAGGAAGTACACCTCAGGACCGTGCCCGTGGCAAGGCTGAGAAGGAATTCACACGTTCAGCAGCAGA
AAAATGGAGATTTTATCGAACAA
>TRINITY_DN110324_c7_g1_i6 from sample A3 / Example unspliced isoform:GATGGATATAGGCGAGGATGAGTCCAACTAGAATTGCCCTTTGTCTACACGACCAAGATGGGCTTTCTATTGTTGCGAATCCCCACGAGGTTTTCATAAAAGTTTCCGCGCGTAACAAATGTGGGACAAACAATTACCATTTTCTTTCCCATAACACGCTCTCTGTTCGTCTGGCGGAGCGAAATGGTGAACTTCTACGA
AGATGACGACCCAGAAGGCGAGGCCCCTGTCGTCAAAACTCAGGCCGAACTCACGCTCCAAAATCTCCTTCAGAAGCAGCTTTCAACAGCTCACAGGTTGGAGCGAGTTGAATTTGAAGAGGTCACACAGAACATGTATTGTATAGGCCATGCATCTTCTGGGGTAGGTACTCTTGCTCAGTTCCGCGAAAATGAACTTC
GAAAAGAGGACAATGATCATCAACAGCCTGGCAACAATCAAGCACACCCACAAAAGTTCCTTAAGGACCGTGCCCGTGGCAAGGCTGAGAAGGAATTCACACGTTCAGCAGCAGAAgtattttctagtccagctcctgatgtacttgacttacatgcatacctgaatgaaaaacattgggaacaagaaaacaatgataca
gaattgaataaacctccaatagtatgtgaaattttgaaagtaaacattacagaatgcaaagcagaattgccagtgccaaacctaagtaatttcactggagacattatttcagAAATGGAGATTTTATCGAACAAGCTATCAGAAGATGCGATCCGGGAAATGCAAGGTGGAAAATTTGCTAATTATGCACCTGGTATTCC
TTCTCATATCCTCTATATCAAGAACCTTTCTCCTGATGTAAAAGAAACAGACCTAGCAGCTTTATATATACGGTTCCAAAGTCCTGGAAAGAAGTTACTCTTCCGTCTCATGCAGCATGGTCGAATGAAGGGACAGGCTTTTGTTACATTTCCTGATAAAGACACAGCAACGCTAGCTCTGCAGTTAACAAATGGTTTCA
GATTGAAGGGCAAACCAGTAGTTATTCAGTATGGTCGTGCAGTTAGGGAGAATGGCAAGTCTACAGATTAGACAAAAATGATGAGGCAGGCCTTACATATGGAATGGACAGTTCATGTAAAATCATATGGCTGGATCTGAATTTAAATGATACGATTAATATAGCCTAGGAATTATACAACAACTAGCAAGGGAAAGATA
TATGTGGATGTGTCAATCTGCTTAGTGGAGGATATATTAAATACATTCTCAGAATTGCACAATGGATAGGCATGGGAAAGGTCGATTGATCATGTGTACAACTGCACATTTAAAGGATTTGATCCATACAACCTAAGAATTGTAGGAAAAACAGACCTGGGAAAGATCAGCATGGCCGAAACAATCTTGTTTTGATATTT
ATTTCTTAATGAATGTCCCAATCAGCTTGACCATGCACAGGAAGAGATTTCACAGTTCTTGGCAAGGATTCATGCCACAAAGATCTAATAATGTATACAAGGTTGTATCCCTGAAGCAATTACAATAAAGCTACAAGATAACATTTTATATTGCCTCCACACAGCAGATTAACATTATTTGTTTTGCAACAATGTGTGAG
TCATGGCATGCAAATCTTTATTTTCAGCATAATCTATCAGGATTAAGTTTTAAGATTACCCTGGTGGCACACTTTCCATTGCACACTGTTTTACTAATCCGCCCCATTGACCTATTTGTGGTCATTTGTTGGACATTAATAACATTGTCTTATCTTCCTCAGTAGAGGTAATGTATGCCTACAGCATTTTAATTTTAATT
TTATCAAAAACAAAAACATTGATGTCTGACAATGGAAGCTTTCTTAGGATTAACAATAAAAACGCTCAGCCAAATGATGTACAACTAGCAACTCCTGTGCATATAAATATGGCGTTTTTTACAGGGTTTACATGCAAAGGACGGTGTCAACTGTTCCTGTTATGATTACTTCCAAGGTGGTGGTTTTATTGTGTCCAGAC
AAAATCAAATTTTTTGTTAATTTTTGGGAGTAATTGCTGAATTCACAGGGGAAGCTTGAATCTTGTTGAAGACTAATATTTTGTATGCTTCTATACAAGCTACTGCCTTCAAATATAAAATCACTCATCTAATGTGTGAGTAGTGCCACAAGTTGAAGTTTTTGGGTGCAATCTTATAGAAACTATTTCGAAATACTATA
TTGCTGGTCAATCCAGTGCTTTTTATTCAGTGTCTCAAGTAATATTATTGGTTGTTTGTTGTAAGCGCCTGGAAGCAACGTTTAATCAAGCAACTTTCATTAGAAATGGGAGTGTTACATGTGATTTCAATTAGTTAAGCAAAAAGAGGTTAGTTTTATTCTTGAATTCAAATGTTCTAAAAACCAAATTTTCACAAGGA
C