sp|Q6S7B0|TAF5_ARATH ----> Transcription initiation factor TFIID subunit 5
Intron 1 GTAAGATTAC ... CTTTGACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.1 | 20 | 10.4 | 7.8 |
| A2 | 18.09 | 15 | 3.4 | 1.6 |
| A3 | 21.06 | 28 | 8 | 6.4 |
| A4 | 16.62 | 14 | 2.8 | 2.4 |
| A5 | 12.97 | 12 | 1.8 | 0.8 |
| A6 | 14.7 | 181 | 32.4 | 32.2 |
| A7 | 14.02 | 129 | 21.6 | 19.6 |
| A8 | 16.65 | 199 | 41.4 | 39.8 |
| A9 | 16.68 | 173 | 36 | 32.2 |
| A10 | 20.62 | 72 | 20 | 9.6 |
>TRINITY_DN116483_c0_g2_i6 from sample A1 / Example spliced isoformCTCAGAACAATAATACAACAACTTCAATACGACCGTGTGGTGTTCTTGAAGTCGAACTTAGTTGTGGAAGAAAAAATTGTAAAGGCCAACGAACAAATCTGCTGTCACGTTGAGCATTTAAACACATTCGAAGGGAACAGCAAACGCATAATTCGGCCGGCATTCGCAGGTTAGCATATTAACTCTAACACGAGGCGAGC
TCTGCCGTAGCGAAAGAAAATGGAAGAAGAACAAATAGAGAAAGCAGTCCTAGAGTACTTGAAGAAGAAGGGTTTCCACCAAACCCAAATAGCGCTGCAAGAAGAACACAAGAGGAATCCCTCCGCAGCCAAGACGGACCGCGAGGTCGGCAATCTAATTCTCGCATTCGCTGAGTCAGAGAATGGGCCAGTGCGATACA
GAGAGGAGTACAGAAAGCTGCGATCTTGGACATATAATTCCTTGGACTTGTACAAGCATGAAATGCTCCGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAAGAAGCTCGTTCATTCTTTCAGAGTTTTCGGGAAGACCATGAAGTCCTATATCTTCATGACTTGCAAAAG
TTGGAAGGTGTTCTTTCACCACAACACTTGGAGGAGATGGAATTTGCTCATTCTTTGAGACAGAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCACGGACAGCCATGCGG
TCCATATTCAAGTGAGGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACAGCAAGAAAA
AACCTGGAGACGTTGGAAAGTCTGGAGGTCCCAGCAAGAAGTTGAAGAAAGATAAGGTTACTGGTACAACAGGAAAGGGAGTTCGCACAGAGACAAATGTTGTTCGTACTGCTCCTCGTGTGAAATCTGAGCTCCCAATGCCCGCCATCTCTATGGAAGTTGAACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGT
TTAGGCAGCACTGCATTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGGTGTGGAACATGGCCAAGATGGGTGAAGAACACAATTCTTCTGAAAATGGCAATACAGGTGAACCTGGTGA
AATTGAGTACTTACCAGGTTTGGATACAGGAAAAAGGTCATACACATTATTACAAGGTCATGCAGGACCTGTTTATGCTGCAAATTTCAGCCCAGAAGGGGATTTCATTTTATCTGCATCGGAAGATTGTACAGTTCGATTATGGAGTTCCAAGATGAATGCAAATCTTGTTTGCTACAAAGGCCACAATTATCCTGTGT
GGGATGTTCAGTTTAGCCCTGTTGGACACTATTTTGTGAGTTCTTCACATGATCGAACGGCTAGAGTTTGGTCAATGGAGAGAATTCAACCTCTACGGATCTTAGCAGGGCATCTATCCGATGTTGATTGTGTACAGTGGCATGTGAATTGCAACTATATCGCTACTGGATCAAGTGATAAGACTGTCAGATTATGGGAT
GTGCAAACCGGTGAATGTGTGCGCATGTTTGTTGGACATAGAGGTATGGTTTTATCAATAGCCATGTCTCCAGATGGGCGCTACATGGCATCTGGAGATGAAGATGGTGCTATAATGGTGTGGGATCTATCAACAGGTCGACGTGTAACTCCTCTAATGGGGCACACATCCTGCGTATGGACACTTGCTTTCAGTTGTGA
AGGTTCAGTATTAGCATCTGGCTCTGCTGACTGTACAGTAAAATTATGGGACATCAATGCAAGTTCAAAAGCACCGCGAACAGAAGAAAAAGCTGGAGCTGCACACAGATTGCGGCTATTAAAGGCTCTCCCCACAAAGTCTACTCCAGTTTATGCATTGCGATTCTCGCGGAGGAACCTCCTATTTGCAGCTGGTGCAT
TTACAAGGAATCCATAAAGTTTATGTTGGGACCCATAAAGGTTCTGTCAATGAGCAGTTTTGCAAATTCAGTGTTGTTTCCTGGTGTAAATTTGAAATAGAAAATATTTTCAGGCAACCCACACGTCATTATCATTATTCTTTAAATATACTGGTGATTATTTATTCAATATGAGAAAATTGTTATATTCAAGGAAATGA
ATTATGCTCG
>TRINITY_DN116483_c0_g2_i5 from sample A1 / Example unspliced isoform:GTGGAAGATAGCTATTATGAGTGTTACAAACTTACGCCCAACAACAATGCATTTATTAGTGGATAAATGAAGCTGACTATAACATAGCATATGCATAAATTATCAAAGTTAATATGAGGGAATGTTGTGAAGGATATCCATGCTTTCTAAAACTAAGATCGGTACTCAATGGAATCAACTGATTATCTGGTTGTTATGAT
AGTTGTGAAGGTTCAGTATTAGCATCTGGCTCTGCTGACTGTACAGTAAAATTATGGGACATCAATGCAAGTTCAAAAGCACCGCGAACAGAAGAAAAGTATGCCATTGTTTCTTTACTCGTGCTGATATTTGTTTGATACACTAATTGTCTTTGAAACTCGAGTAAATTACAACCATTGCCATTGTTTTTATTGCAGAG
CTGGAGCTGCACACAGATTGCGGCTATTAAAGGCTCTCCCCACAAAGTCTACTCCAGTTTATGCATTGCGAgtaagattacaaccgttatctttctagaaagagtgttatttttatcgttattattgatttctgctgcttatgtgttttgctttgactagTTCTCGCGGAGGAACCTCCTATTTGCAGCTGGTGCATTTA
CAAGGAATCCATAAAGTTTATGTTGGGACCCATAAAGGTTCTGTCAATGAGCAGTTTTGCAAATTCAGTGTTGTTTCCTGGTGTAAATTTGAAATAGAAAATATTTTCAGGCAACCCACACGTCATTATCATTATTCTTTAAATATACTGGTGATTATTTATTCAATATGAGAAAATTGTTATATTCAAGGAAATGAATT
ATGCTCG
Intron 2 GCAAGTTCAT ... TGGTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 24 | 8 | 6 |
| A2 | 11.54 | 23 | 0 | 3 |
| A3 | 35.21 | 46 | 5 | 25 |
| A4 | 44.12 | 19 | 2 | 15 |
| A5 | 24 | 19 | 1 | 6 |
| A6 | 34.78 | 15 | 0 | 8 |
| A7 | 12.2 | 36 | 0 | 5 |
| A8 | 10 | 27 | 0 | 3 |
| A9 | 20.75 | 42 | 0 | 11 |
| A10 | 13.64 | 38 | 0 | 6 |
>TRINITY_DN115033_c0_g1_i20 from sample A3 / Example spliced isoformGCGAGGTTGCTCAGAACAATAATACAACAACTTCAATACGACCGTGTGGTGTTCTTGAAGTCGAACTTAGTTGTGGAAGAAAAAATTGTAAAGGCCAACGAACAAATCTGCTGTCACGTTGAGCATTTAAACACATTCGAAGGGAACAGCAAACGCATAATTCGGCCGGCATTCGCAGGTTAGCATATTAACTCTAACAC
GAGGCGAGCTCTGCCGTAGCGAAAGAAAATGGAAGAAGAACAAATAGAGAAAGCAGTCCTAGAGTACTTGAAGAAGAAGGGTTTCCACCAAACCCAAATAGCGCTGCAAGAAGAACACAAGAGGAATCCCTCCGCAGCCAAGACGGACCGCGAGGTCGGCAATCTAATTCTCGCATTCGCTGAGTCAGAGAATGGGCCAG
TGCGATACAGAGAGGAGTACAGAAAGCTGCGATCTTGGACATATAATTCCTTGGACTTGTACAAGCATGAAATGCTCCGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAAGAAGCTCGTTCATTCTTTCAGAGTTTTCGGGAAGACCATGAAGTCCTATATCTTCATGAC
TTGCAAAAGTTGGAAGGTGTTCTTTCACCACAACACTTGGAGGAGATGGAATTTGCTCATTCTTTGAGACAGAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCACGGACA
GCCATGCGGTCCATATTCAAGTGAGGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACA
GCAAGGTTAATATAAAGGGGATCATTGTTATCTTGAAGTTATGCTATTTCAATTAAAGGGGATTCCAGTTGGTGAATATATGCTTGTTTCATTCATAATATGAAATAACTGATCATATCCTGTAACATTTATTGTTGCTGGAAACCTAAGTCACCTGGTTTGTGTTCATGTTCAAATTTGGCAACAATGAAATTCAGAAA
AGTTTTGCCAGTGCAAAACAATTTGATGAAATCCAGATTGAGTTCGACAAAGAGAATCAAGCAAAATTTGTTAAGAACATATGAAAACATCATCTATTGTTTGAAAAAGGAATGAATCTTGAAGATTTTTATCAATATTGTAAAAATTTGCATGGCCATTAAATTTGCAATTTTTCAAGTAATTGAGATTCGGTGAATTT
TAGGTTTTTGGAAAAACTTCTGGAATGCAGTTACTAAGGTGTGC
>TRINITY_DN115033_c0_g1_i17 from sample A3 / Example unspliced isoform:TTTGAAGAAATCCTTGAATTTGTACAATTAATTTTAATGCTTTTAACTCAATATTACTTTGTATATTTAATGACAATGAGAATAATGCATGTAATGAATGCTTATTTATCTCTGTTTTTTTTATTATATTTTAACATGGATGGAGTTTTTTGAATTTTATATACAGTACATGTATTAGTGATACAACAGCATTTTTGGGT
TGAAAAGATGTTTATTGATATCGTTTTTGGGTGTTTTTTTCCTTGTCATACTTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGgcaagttcattttaggcaccctccttgtaccttataaattcttcatggtttttatt
aaatgctattttactggcaaagtcattggcaatggcatttttttgtttttatgctgtcatgcttttttatacttgattgtttcatctaaattttttgtttcagaatgttctcataaaatattgatctttggtcaacagTCTCTCACGGACAGCCATGCGGTCCATATTCAAGTGAGGGAGAAGTCATAACATTAACAGGA
AGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTAAGTCTGAAAATTTGAGCTAGTTAGTGGAGGTATTGAAATTGTTGAATTCCAATAAAACATTTTAGACTAGGTGCTCAGCTCTTACGCTGGGTTAACTTTGCAGCATAATAGTAAATACCATAAACAGATAGATTTGGGGTTTGTTT
GGTTTTCTGTGTATCTGCATTCTTACTCTTAGTATTTACTGCTTATGTTTATAGTTATATTATATGAACATATTTACTTTTCCTATTTCTCTTGCATTTAATAAGGCAAATCAAGTAATTGCTGCATACGTCTTTCACAGAAATACT
Intron 3 GTATGCCATT ... TTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.7 | 30.5 | 11 | 3 |
| A2 | 2.38 | 20.5 | 0 | 1 |
| A3 | 3.55 | 28 | 1 | 1 |
| A4 | 8.69 | 26.5 | 3 | 2 |
| A5 | 13.14 | 10 | 1 | 2 |
| A6 | 0.5 | 199.5 | 2 | 0 |
| A7 | 1.52 | 162 | 3 | 2 |
| A8 | 0.25 | 198.5 | 1 | 0 |
| A9 | 1.31 | 189.5 | 2 | 3 |
| A10 | 0 | 114 | 0 | 0 |
>TRINITY_DN116483_c0_g2_i6 from sample A1 / Example spliced isoformCTCAGAACAATAATACAACAACTTCAATACGACCGTGTGGTGTTCTTGAAGTCGAACTTAGTTGTGGAAGAAAAAATTGTAAAGGCCAACGAACAAATCTGCTGTCACGTTGAGCATTTAAACACATTCGAAGGGAACAGCAAACGCATAATTCGGCCGGCATTCGCAGGTTAGCATATTAACTCTAACACGAGGCGAGC
TCTGCCGTAGCGAAAGAAAATGGAAGAAGAACAAATAGAGAAAGCAGTCCTAGAGTACTTGAAGAAGAAGGGTTTCCACCAAACCCAAATAGCGCTGCAAGAAGAACACAAGAGGAATCCCTCCGCAGCCAAGACGGACCGCGAGGTCGGCAATCTAATTCTCGCATTCGCTGAGTCAGAGAATGGGCCAGTGCGATACA
GAGAGGAGTACAGAAAGCTGCGATCTTGGACATATAATTCCTTGGACTTGTACAAGCATGAAATGCTCCGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAAGAAGCTCGTTCATTCTTTCAGAGTTTTCGGGAAGACCATGAAGTCCTATATCTTCATGACTTGCAAAAG
TTGGAAGGTGTTCTTTCACCACAACACTTGGAGGAGATGGAATTTGCTCATTCTTTGAGACAGAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCACGGACAGCCATGCGG
TCCATATTCAAGTGAGGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACAGCAAGAAAA
AACCTGGAGACGTTGGAAAGTCTGGAGGTCCCAGCAAGAAGTTGAAGAAAGATAAGGTTACTGGTACAACAGGAAAGGGAGTTCGCACAGAGACAAATGTTGTTCGTACTGCTCCTCGTGTGAAATCTGAGCTCCCAATGCCCGCCATCTCTATGGAAGTTGAACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGT
TTAGGCAGCACTGCATTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGGTGTGGAACATGGCCAAGATGGGTGAAGAACACAATTCTTCTGAAAATGGCAATACAGGTGAACCTGGTGA
AATTGAGTACTTACCAGGTTTGGATACAGGAAAAAGGTCATACACATTATTACAAGGTCATGCAGGACCTGTTTATGCTGCAAATTTCAGCCCAGAAGGGGATTTCATTTTATCTGCATCGGAAGATTGTACAGTTCGATTATGGAGTTCCAAGATGAATGCAAATCTTGTTTGCTACAAAGGCCACAATTATCCTGTGT
GGGATGTTCAGTTTAGCCCTGTTGGACACTATTTTGTGAGTTCTTCACATGATCGAACGGCTAGAGTTTGGTCAATGGAGAGAATTCAACCTCTACGGATCTTAGCAGGGCATCTATCCGATGTTGATTGTGTACAGTGGCATGTGAATTGCAACTATATCGCTACTGGATCAAGTGATAAGACTGTCAGATTATGGGAT
GTGCAAACCGGTGAATGTGTGCGCATGTTTGTTGGACATAGAGGTATGGTTTTATCAATAGCCATGTCTCCAGATGGGCGCTACATGGCATCTGGAGATGAAGATGGTGCTATAATGGTGTGGGATCTATCAACAGGTCGACGTGTAACTCCTCTAATGGGGCACACATCCTGCGTATGGACACTTGCTTTCAGTTGTGA
AGGTTCAGTATTAGCATCTGGCTCTGCTGACTGTACAGTAAAATTATGGGACATCAATGCAAGTTCAAAAGCACCGCGAACAGAAGAAAAAGCTGGAGCTGCACACAGATTGCGGCTATTAAAGGCTCTCCCCACAAAGTCTACTCCAGTTTATGCATTGCGATTCTCGCGGAGGAACCTCCTATTTGCAGCTGGTGCAT
TTACAAGGAATCCATAAAGTTTATGTTGGGACCCATAAAGGTTCTGTCAATGAGCAGTTTTGCAAATTCAGTGTTGTTTCCTGGTGTAAATTTGAAATAGAAAATATTTTCAGGCAACCCACACGTCATTATCATTATTCTTTAAATATACTGGTGATTATTTATTCAATATGAGAAAATTGTTATATTCAAGGAAATGA
ATTATGCTCG
>TRINITY_DN116483_c0_g2_i5 from sample A1 / Example unspliced isoform:GTGGAAGATAGCTATTATGAGTGTTACAAACTTACGCCCAACAACAATGCATTTATTAGTGGATAAATGAAGCTGACTATAACATAGCATATGCATAAATTATCAAAGTTAATATGAGGGAATGTTGTGAAGGATATCCATGCTTTCTAAAACTAAGATCGGTACTCAATGGAATCAACTGATTATCTGGTTGTTATGAT
AGTTGTGAAGGTTCAGTATTAGCATCTGGCTCTGCTGACTGTACAGTAAAATTATGGGACATCAATGCAAGTTCAAAAGCACCGCGAACAGAAGAAAAgtatgccattgtttctttactcgtgctgatatttgtttgatacactaattgtctttgaaactcgagtaaattacaaccattgccattgtttttattgcagAG
CTGGAGCTGCACACAGATTGCGGCTATTAAAGGCTCTCCCCACAAAGTCTACTCCAGTTTATGCATTGCGAGTAAGATTACAACCGTTATCTTTCTAGAAAGAGTGTTATTTTTATCGTTATTATTGATTTCTGCTGCTTATGTGTTTTGCTTTGACTAGTTCTCGCGGAGGAACCTCCTATTTGCAGCTGGTGCATTTA
CAAGGAATCCATAAAGTTTATGTTGGGACCCATAAAGGTTCTGTCAATGAGCAGTTTTGCAAATTCAGTGTTGTTTCCTGGTGTAAATTTGAAATAGAAAATATTTTCAGGCAACCCACACGTCATTATCATTATTCTTTAAATATACTGGTGATTATTTATTCAATATGAGAAAATTGTTATATTCAAGGAAATGAATT
ATGCTCG
Intron 4 GTTAATATAA ... GCCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.03 | 54 | 5 | 19 |
| A2 | 23.44 | 49 | 6 | 15 |
| A3 | 31.37 | 70 | 8 | 32 |
| A4 | 26.56 | 47 | 2 | 17 |
| A5 | 26.47 | 25 | 4 | 9 |
| A6 | 31.4 | 59 | 0 | 27 |
| A7 | 29.28 | 128 | 4 | 53 |
| A8 | 26.58 | 58 | 0 | 21 |
| A9 | 20.45 | 140 | 9 | 36 |
| A10 | 29.45 | 115 | 4 | 48 |
>TRINITY_DN105853_c1_g1_i6 from sample A5 / Example spliced isoformCAACAACTTCAATACGACCGTGTGGTGTTCTTGAAGTCGAACTTAGTTGTGGAAGAAAAAATTGTAAAGGCCAACGAACAAATCTGCTGTCACGTTGAGCATTTAAACACATTCGAAGGGAACAGCAAACGCATAATTCGGCCGGCATTCGCAGGTTAGCATATTAACTCTAACACGAGGCGAGCTCTGCCGTAGCGAAA
GAAAATGGAAGAAGAACAAATAGAGAAAGCAGTCCTAGAGTACTTGAAGAAGAAGGGTTTCCACCAAACCCAAATAGCGCTGCAAGAAGAACACAAGAGGAATCCCTCCGCAGCCAAGACGGACCGCGAGGTCGGCAATCTAATTCTCGCATTCGCTGAGTCAGAGAATGGGCCAGTGCGATACAGAGAGGAGTACAGAA
AGCTGCGATCTTGGACATATAATTCCTTGGACTTGTACAAGCATGAAATGCTCCGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAAGAAGCTCGTTCATTCTTTCAGAGTTTTCGGGAAGACCATGAAGTCCTATATCTTCATGACTTGCAAAAGTTGGAAGGTGTTCTT
TCACCACAACACTTGGAGGAGATGGAATTTGCTCATTCTTTGAGACAGAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCACGGACAGCCATGCGGTCCATATTCAAGTGA
GGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACAGCAAGAAAAAACCTGGAGACGTTG
GAAAGTCTGGAGGTCCCAGCAAGAAGTTGAAGAAAGATAAGGTTACTGGTACAACAGGAAAGGGAGTTCGCACAGAGACAAATGTTGTTCGTACTGCTCCTCGTGTGAAATCTGAGCTCCCAATGCCCGCCATCTCTATGGAAGTTGAACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGTTTAGGCAGCACTGCA
TTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGGTGTGGAACATGGCCAAGATGGGTGAAGAACACAATTCTTCTGAAAATGGCAATACAGGTGAACCTGGTGAAATTGAGTACTTACC
AGGTTTGGATACAGGAAAAAGGTCATACACATTATTACAAGGTCATGCAGGACCTGTTTATGCTGCAAATTTCAGCCCAGAAGGGGATTTCATTTTATCTGCATCGGAAGATTGTACAGTTCGATTATGGAGTTCCAAGATGAATGCAAATCTTGTTTGCTACAAAGGCCACAATTATCCTGTGTGGGATGTTCAGTTTA
GCCCTGTTGGACACTATTTTGTGAGTTCTTCACATGATCGAACGGCTAGAGTTTGGTCAATGGAGAGAATTCAACCTCTACGGATCTTAGCAGGGCATCTATCCGATGTTGATTGTGTACAGTGGCATGTGAATTGCAACTATATCGCTACTGGATCAAGTGATAAGACTGTCAGATTATGGGATGTGCAAACCGGTGAA
TGTGTGCGCATGTTTGTTGGACATAGAGGTATGGTTTTATCAATAGCCATGTCTCCAGATGGGCGCTACATGGCATCTGGAGATGAAGATGGTGCTATAATGGTGTGGGATCTATCAACAGGTCGACGTGTAACTCCTCTAATGGGGCACACATCCTGCGTATGGACACTTGCTTTCAGGTATATTGTTAATACTTTTAT
CAACAGTATTTTTCTTTAATGAACCAAAGTACTTTAATTGACTCCTTTGAGCGTAGCCCC
>TRINITY_DN105853_c1_g1_i5 from sample A5 / Example unspliced isoform:TATTGCTTAAATCCTTTTTCTTGTAGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACAGCAAGgttaatataaaggggatcattgttaacttgaagttatgctatttcaattaaaggggattccagttggtg
aatatatgcttgtttcattcataatatgaaataactgatcatatcctgtaacatttattgttgctggaaacctaagtcacctggtttgtgttcatgttcaaatttggcaacaatgaaattcagaaaagttttgccagtgcaaaacaatttgatgaaatccagattgagttcgacaaagagaatcaagcaaaatttgttaa
gaacatatgaaaacatcatctattgtttgaaaaaggaatgaatcttgaagatttttatcaatattgtaaaaatttgcatggccattaaatttgcaatttttcaagtaattgagattcggtgaattttaggtttttggaaaaacttctggaatgcagtaactaaggtgtgcaactattctctttaactttctagagattca
acttttgataaccttttcatttcgccaatgcagAAAAAACCTGGAGACGTTGGAAAGTCTGGAGGTCCCAGCAAGAAGTTGAAGAAAGATAAGGTTACTGGTACAACAGGAAAGGGAGTTCGCACAGAGACAAATGTTGTTCGTACTGCTCCTCGTGTGAAATCTGAGCTCCCAATGCCCGCCATCTCTATGGAAGTTGA
ACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGTTTAGGCAGCACTGCATTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGGTGTGGAACATGGCCAAGATGGGTGAAGAACACA
ATTCTTCTGAAAATGGCAATACAGGTGAACCTGGTGAAATTGAGTACTTACCAGGTTTGGATACAGGAAAAAGGTCATACACATTATTACAAGGTCATGCAGGACCTGTTTATGCTGCAAATTTCAGCCCAGAAGGGGATTTCATTTTATCTGCATCGGAAGATTGTACAGTTCGATTATGGAGTTCCAAGATGAATGCA
AATCTTGTTTGCTACAAAGGCCACAATTATCCTGTGTGGGATGTTCAGTTTAGCCCTGTTGGACACTATTTTGTGAGTTCTTCACATGATCGAACGGCTAGAGTTTGGTCAATGGAGAGAATTCAACCTCTACGGATCTTAGCAGGGCATCTATCCGATGTTGATTGTGTACAGTGGCATGTGAATTGCAACTATATCGC
TACTGGATCAAGTGATAAGACTGTCAGATTATGGGATGTGCAAACCGGTGAATGTGTGCGCATGTTTGTTGGACATAGAGGTATGGTTTTATCAATAGCCATGTCTCCAGATGGGCGCTACATGGCATCTGGAGATGAAGATGGTGCTATAATGGTGTGGGATCTATCAACAGGTCGACGTGTAACTCCTCTAATGGGGC
ACACATCCTGCGTATGGACACTTGCTTTCAGTTGTGAAGGTTCAGTATTAGCATCTGGCTCTGCTGACTGTACAGTAAAATTATGGGACATCAATGCAAGTTCAAAAGCACCGCGAACAGAAGAAAAAGCTGGAGCTGCACACAGATTGCGGCTATTAAAGGCTCTCCCCACAAAGTCTACTCCAGTTTATGCATTGCGA
TTCTCGCGGAGGAACCTCCTATTTGCAGCTGGTGCATTTACAAGGAATCCATAAAGTTTATGTTGGGACCCATAAAGGTTCTGTCAATGAGCAGTTTTGCAAATTCAGTGTTGTTTCCTGGTGTAAATTTGAAATAGAAAATATTTTCAGGCAACCCACACGTCATTATCATTATTCTTTAAATATACTGGTGATTATTT
ATTCAATATGAGAAAATTGTTATATTCAAGGAAATGAATTATGCTCTAGCTTGCATTTTTAGCTTTGGTCTAGCAAGAAAATATTACATTATTTTACATCTGAG
Intron 5 GTAATTCTAG ... TTCTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.19 | 36 | 12.3 | 19.6 |
| A2 | 24.66 | 40 | 13.4 | 5.6 |
| A3 | 15.79 | 41 | 8.1 | 3.1 |
| A4 | 11.05 | 44 | 5.6 | 9.9 |
| A5 | 12.73 | 21 | 3.1 | 2.1 |
| A6 | 21.8 | 43 | 12.6 | 5.7 |
| A7 | 20.61 | 77 | 21 | 6.9 |
| A8 | 9.99 | 74 | 8.4 | 7.7 |
| A9 | 8.24 | 92 | 8.6 | 9.4 |
| A10 | 12.55 | 71 | 10.6 | 6.9 |
>TRINITY_DN116483_c0_g2_i6 from sample A1 / Example spliced isoformCTCAGAACAATAATACAACAACTTCAATACGACCGTGTGGTGTTCTTGAAGTCGAACTTAGTTGTGGAAGAAAAAATTGTAAAGGCCAACGAACAAATCTGCTGTCACGTTGAGCATTTAAACACATTCGAAGGGAACAGCAAACGCATAATTCGGCCGGCATTCGCAGGTTAGCATATTAACTCTAACACGAGGCGAGC
TCTGCCGTAGCGAAAGAAAATGGAAGAAGAACAAATAGAGAAAGCAGTCCTAGAGTACTTGAAGAAGAAGGGTTTCCACCAAACCCAAATAGCGCTGCAAGAAGAACACAAGAGGAATCCCTCCGCAGCCAAGACGGACCGCGAGGTCGGCAATCTAATTCTCGCATTCGCTGAGTCAGAGAATGGGCCAGTGCGATACA
GAGAGGAGTACAGAAAGCTGCGATCTTGGACATATAATTCCTTGGACTTGTACAAGCATGAAATGCTCCGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAAGAAGCTCGTTCATTCTTTCAGAGTTTTCGGGAAGACCATGAAGTCCTATATCTTCATGACTTGCAAAAG
TTGGAAGGTGTTCTTTCACCACAACACTTGGAGGAGATGGAATTTGCTCATTCTTTGAGACAGAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCACGGACAGCCATGCGG
TCCATATTCAAGTGAGGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACAGCAAGAAAA
AACCTGGAGACGTTGGAAAGTCTGGAGGTCCCAGCAAGAAGTTGAAGAAAGATAAGGTTACTGGTACAACAGGAAAGGGAGTTCGCACAGAGACAAATGTTGTTCGTACTGCTCCTCGTGTGAAATCTGAGCTCCCAATGCCCGCCATCTCTATGGAAGTTGAACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGT
TTAGGCAGCACTGCATTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGGTGTGGAACATGGCCAAGATGGGTGAAGAACACAATTCTTCTGAAAATGGCAATACAGGTGAACCTGGTGA
AATTGAGTACTTACCAGGTTTGGATACAGGAAAAAGGTCATACACATTATTACAAGGTCATGCAGGACCTGTTTATGCTGCAAATTTCAGCCCAGAAGGGGATTTCATTTTATCTGCATCGGAAGATTGTACAGTTCGATTATGGAGTTCCAAGATGAATGCAAATCTTGTTTGCTACAAAGGCCACAATTATCCTGTGT
GGGATGTTCAGTTTAGCCCTGTTGGACACTATTTTGTGAGTTCTTCACATGATCGAACGGCTAGAGTTTGGTCAATGGAGAGAATTCAACCTCTACGGATCTTAGCAGGGCATCTATCCGATGTTGATTGTGTACAGTGGCATGTGAATTGCAACTATATCGCTACTGGATCAAGTGATAAGACTGTCAGATTATGGGAT
GTGCAAACCGGTGAATGTGTGCGCATGTTTGTTGGACATAGAGGTATGGTTTTATCAATAGCCATGTCTCCAGATGGGCGCTACATGGCATCTGGAGATGAAGATGGTGCTATAATGGTGTGGGATCTATCAACAGGTCGACGTGTAACTCCTCTAATGGGGCACACATCCTGCGTATGGACACTTGCTTTCAGTTGTGA
AGGTTCAGTATTAGCATCTGGCTCTGCTGACTGTACAGTAAAATTATGGGACATCAATGCAAGTTCAAAAGCACCGCGAACAGAAGAAAAAGCTGGAGCTGCACACAGATTGCGGCTATTAAAGGCTCTCCCCACAAAGTCTACTCCAGTTTATGCATTGCGATTCTCGCGGAGGAACCTCCTATTTGCAGCTGGTGCAT
TTACAAGGAATCCATAAAGTTTATGTTGGGACCCATAAAGGTTCTGTCAATGAGCAGTTTTGCAAATTCAGTGTTGTTTCCTGGTGTAAATTTGAAATAGAAAATATTTTCAGGCAACCCACACGTCATTATCATTATTCTTTAAATATACTGGTGATTATTTATTCAATATGAGAAAATTGTTATATTCAAGGAAATGA
ATTATGCTCG
>TRINITY_DN116483_c0_g2_i4 from sample A1 / Example unspliced isoform:CTTTTCATCTTAAGCTTTTTTTGCAGATATTTCAAATTATCGTTGTTATTAGTATCAGCTGAAGAAAGATAACCTTCTAAATTAATTCTATGTATAGAAAGAATCATCACTAGTTTGATGGTGACCTCTGTCTATTTGCAGCTCTATGGAAGTTGAACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGTTTAGGCA
GCACTGCATTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGgtaattctagtggcaagcaaaggcattacaggttataatttatggaatatggttcctttgcattgccctttcaggagtggttatgatttgcatttagatgtagttttggtttgtttatctgtatcatttgacatgcttgcactgtgaa
ttcttgtcagTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGGTAAGTGTTTTGCAGATGCAATTTTTATTTTGCTCTTTGAACAACAGGCAATATTTATCCATTTGTAATGAAAATGGGGCTTGAACAGGTGTGGAACATGGCCAAGATGGGTGAAGAACA
CAATTCTTCTGAAAATGGTACCATTTGCAGTCTCTTGATTTTATTTATTTCTTATT
Intron 6 GTAAGTGTTT ... GCTTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.64 | 28 | 7 | 4.4 |
| A2 | 2.52 | 16 | 0 | 0.4 |
| A3 | 9.47 | 27 | 3 | 2.9 |
| A4 | 12.24 | 31 | 4 | 4.9 |
| A5 | 3.9 | 10 | 0 | 0.4 |
| A6 | 11.11 | 35 | 2 | 4.9 |
| A7 | 6.86 | 63 | 0 | 5.1 |
| A8 | 8.57 | 72 | 0 | 7.7 |
| A9 | 8.91 | 80 | 0 | 9 |
| A10 | 8.46 | 61 | 0 | 6.4 |
>TRINITY_DN116483_c0_g2_i6 from sample A1 / Example spliced isoformCTCAGAACAATAATACAACAACTTCAATACGACCGTGTGGTGTTCTTGAAGTCGAACTTAGTTGTGGAAGAAAAAATTGTAAAGGCCAACGAACAAATCTGCTGTCACGTTGAGCATTTAAACACATTCGAAGGGAACAGCAAACGCATAATTCGGCCGGCATTCGCAGGTTAGCATATTAACTCTAACACGAGGCGAGC
TCTGCCGTAGCGAAAGAAAATGGAAGAAGAACAAATAGAGAAAGCAGTCCTAGAGTACTTGAAGAAGAAGGGTTTCCACCAAACCCAAATAGCGCTGCAAGAAGAACACAAGAGGAATCCCTCCGCAGCCAAGACGGACCGCGAGGTCGGCAATCTAATTCTCGCATTCGCTGAGTCAGAGAATGGGCCAGTGCGATACA
GAGAGGAGTACAGAAAGCTGCGATCTTGGACATATAATTCCTTGGACTTGTACAAGCATGAAATGCTCCGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAAGAAGCTCGTTCATTCTTTCAGAGTTTTCGGGAAGACCATGAAGTCCTATATCTTCATGACTTGCAAAAG
TTGGAAGGTGTTCTTTCACCACAACACTTGGAGGAGATGGAATTTGCTCATTCTTTGAGACAGAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCACGGACAGCCATGCGG
TCCATATTCAAGTGAGGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACAGCAAGAAAA
AACCTGGAGACGTTGGAAAGTCTGGAGGTCCCAGCAAGAAGTTGAAGAAAGATAAGGTTACTGGTACAACAGGAAAGGGAGTTCGCACAGAGACAAATGTTGTTCGTACTGCTCCTCGTGTGAAATCTGAGCTCCCAATGCCCGCCATCTCTATGGAAGTTGAACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGT
TTAGGCAGCACTGCATTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGGTGTGGAACATGGCCAAGATGGGTGAAGAACACAATTCTTCTGAAAATGGCAATACAGGTGAACCTGGTGA
AATTGAGTACTTACCAGGTTTGGATACAGGAAAAAGGTCATACACATTATTACAAGGTCATGCAGGACCTGTTTATGCTGCAAATTTCAGCCCAGAAGGGGATTTCATTTTATCTGCATCGGAAGATTGTACAGTTCGATTATGGAGTTCCAAGATGAATGCAAATCTTGTTTGCTACAAAGGCCACAATTATCCTGTGT
GGGATGTTCAGTTTAGCCCTGTTGGACACTATTTTGTGAGTTCTTCACATGATCGAACGGCTAGAGTTTGGTCAATGGAGAGAATTCAACCTCTACGGATCTTAGCAGGGCATCTATCCGATGTTGATTGTGTACAGTGGCATGTGAATTGCAACTATATCGCTACTGGATCAAGTGATAAGACTGTCAGATTATGGGAT
GTGCAAACCGGTGAATGTGTGCGCATGTTTGTTGGACATAGAGGTATGGTTTTATCAATAGCCATGTCTCCAGATGGGCGCTACATGGCATCTGGAGATGAAGATGGTGCTATAATGGTGTGGGATCTATCAACAGGTCGACGTGTAACTCCTCTAATGGGGCACACATCCTGCGTATGGACACTTGCTTTCAGTTGTGA
AGGTTCAGTATTAGCATCTGGCTCTGCTGACTGTACAGTAAAATTATGGGACATCAATGCAAGTTCAAAAGCACCGCGAACAGAAGAAAAAGCTGGAGCTGCACACAGATTGCGGCTATTAAAGGCTCTCCCCACAAAGTCTACTCCAGTTTATGCATTGCGATTCTCGCGGAGGAACCTCCTATTTGCAGCTGGTGCAT
TTACAAGGAATCCATAAAGTTTATGTTGGGACCCATAAAGGTTCTGTCAATGAGCAGTTTTGCAAATTCAGTGTTGTTTCCTGGTGTAAATTTGAAATAGAAAATATTTTCAGGCAACCCACACGTCATTATCATTATTCTTTAAATATACTGGTGATTATTTATTCAATATGAGAAAATTGTTATATTCAAGGAAATGA
ATTATGCTCG
>TRINITY_DN116483_c0_g2_i7 from sample A1 / Example unspliced isoform:CTCAGAACAATAATACAACAACTTCAATACGACCGTGTGGTGTTCTTGAAGTCGAACTTAGTTGTGGAAGAAAAAATTGTAAAGGCCAACGAACAAATCTGCTGTCACGTTGAGCATTTAAACACATTCGAAGGGAACAGCAAACGCATAATTCGGCCGGCATTCGCAGGTTAGCATATTAACTCTAACACGAGGCGAGC
TCTGCCGTAGCGAAAGAAAATGGAAGAAGAACAAATAGAGAAAGCAGTCCTAGAGTACTTGAAGAAGAAGGGTTTCCACCAAACCCAAATAGCGCTGCAAGAAGAACACAAGAGGAATCCCTCCGCAGCCAAGACGGACCGCGAGGTCGGCAATCTAATTCTCGCATTCGCTGAGTCAGAGAATGGGCCAGTGCGATACA
GAGAGGAGTACAGAAAGCTGCGATCTTGGACATATAATTCCTTGGACTTGTACAAGCATGAAATGCTCCGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAAGAAGCTCGTTCATTCTTTCAGAGTTTTCGGGAAGACCATGAAGTCCTATATCTTCATGACTTGCAAAAG
TTGGAAGGTGTTCTTTCACCACAACACTTGGAGGAGATGGAATTTGCTCATTCTTTGAGACAGAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGACCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAGATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCACGGACAGCCATGCGG
TCCATATTCAAGTGAGGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAAATAAATCAAAAAGAGATTCGTTGGGGGGTACTTGAAGACTCTTTAGAAGAGAGACTTGAGAAAGAAATTTTAGCTGCAGAGGCTGATAAAGCTGAAGCAGAAGCCAAAGAAGGGGATGGAGAAGACAGCAAGAAAA
AACCTGGAGACGTTGGAAAGTCTGGAGGTCCCAGCAAGAAGTTGAAGAAAGATAAGGTTACTGGTACAACAGGAAAGGGAGTTCGCACAGAGACAAATGTTGTTCGTACTGCTCCTCGTGTGAAATCTGAGCTCCCAATGCCCGCCATCTCTATGGAAGTTGAACGCTCAGCTTTGGAAGACTTACGCAGTCGTGCTCGT
TTAGGCAGCACTGCATTGCCTTCTGTCAGCTTCTACACCTTTATTAACACCCACAACAGGTAATTCTAGTGGCAAGCAAAGGCATTACAGGTTATAATTTATGGAATATGGTTCCTTTGCATTGCCCTTTCAGGAGTGGTTATGATTTGCATTTAGATGTAGTTTTGGTTTGTTTATCTGTATCATTTGACATGCTTGCA
CTGTGAATTCTTGTCAGTCTCAATTGTGCATCTATATCTCAGGATGGATCTTTAGTTGTTGGAGGTTTTTCTGATTCATCTTTGAAGgtaagtgttttgcagatgcaatttttattttgctctttgaacaacaggcaatatttatccatttgtaatgaaaatggggcttgaacagGTGTGGAACATGGCCAAGATGGGTG
AAGAACACAATTCTTCTGAAAATGGTACCATTTGCAGTCTCTTGATTTTATTTATTTCTTATT