NA ----> NA
Intron 1 GTCAGAAGGT ... TAGTTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.58 | 36.5 | 101 | 113.5 |
| A2 | 74.56 | 29.5 | 81 | 81.3 |
| A3 | 69.05 | 49 | 104 | 108.8 |
| A4 | 68.17 | 36.5 | 81 | 72.5 |
| A5 | 66.04 | 14.5 | 25 | 30.3 |
| A6 | 79.73 | 32.5 | 108 | 129.5 |
| A7 | 74.58 | 113 | 340 | 309.8 |
| A8 | 79.64 | 96.5 | 307 | 421.8 |
| A9 | 73.55 | 118.5 | 311 | 329.5 |
| A10 | 76.37 | 91 | 277 | 292.8 |
>TRINITY_DN113283_c0_g1_i3 from sample A1 / Example spliced isoformGATAAGTTATAAAACACACCAAGGGTCAGCTCTTGGAGGCCAGGGGTCTCTGGCTGCATCGATTTTTAAACCTTTAAATATATTTTGTGCCCTCTTCGCCTCCTCCCCCTGTGAGCAGGTATTACATGCCAATTTACAGCTCACAAAATCCAATTCACATGTATCTATATTTTACTACCTAACTTTTGCCACAAACTTCC
ATAATTGCTCTCCCAAACATTCTACCATGAACATGGCCTGGTCCTGATCTTGAATTTGAAAACGGAATTGATATAATTTTATCGAGTAGTGTTGATCGAATTGGGCGAATAGATAAAATGGTAGCAGGTGGCAGAAGAAGATTGCTGCAGCAGGCATTGAAATGGCATGGAACATTATACGATCTCATGGGCATTGAATA
CAGATTACATCTGCCTAATGGTAATGGTGATATGAGTTTTAATTCAGCAAGCACAAGGCACATGTGCCAACTCGTCTCAAAGATGAATGGAAATCGCGCGTTTCTTGTGGACACTTTGGCACTGGAACATCATTTCTCCTTGTTACAACATGAGACTGAAAAGTTACGGACTGCCATAGACAAAATGCAGAGTGAATTGA
GATACGAGATTGACAAAGTGACTGCTGGCCAACATCTAGACTTGAATTTGGAAAGAGTGAATTGAGATACGAGATTGACAAAGTGACTGCTGGCCAACATCTAGACTTGAATTTGGAAAGAGGGTAAGGTGTCCTTTATTTTTGGCCAAAGCATAATTATGATGAGATGCATTTTAGATAACATTTGTAATCAATAAAGT
GTC
>TRINITY_DN113283_c0_g1_i2 from sample A1 / Example unspliced isoform:GATAAGTTATAAAACACACCAAGGGTCAGCTCTTGGAGGCCAGGGGTCTCTGGCTGCATCGATTTTTAAACCTTTAAATATATTTTGTGCCCTCTTCGCCTCCTCCCCCTGTGAGCAGGTATTACATGCCAATTTACAGCTCACAAAATCCAATTCACATGTATCTATATTTTACTACCTAACTTTTGCCACAAACTTCC
ATAATTGCTCTCCCAAACATTCTACCATGAACATGGCCTGGTCCTGATCTTGAATTTGAAAACGGAATTGATATAATTTTATCGAGTAGTGTTGATCGAATTGGGCGAATAGATAAAATGGTAGCAGGTGGCAGAAGAAGATTGCTGCAGCAGGCATTGAAATGGCATGGAACATTATACGATCTCATGGGCATTGAATA
CAGATTACATCTGCCTAATGGTAATGGTGATATGAGTTTTAATTCAGCAAGCACAAGGCACATGTGCCAACTCGTCTCAAAGATGAATGGAAATCGCGCGTTTCTTGTGGACACTTTGGCACTGgtcagaaggttggaagctcaaggtatcccttctaagcaagctgaggttataacagcatctatcactgaagttctga
atcatagcctggaaaatatagcgcaatcctttgtttcaaaaccagaaatgcaaacaagtggaatgatgcaagaatctgctctttcaaagttcaaggctgaagttcatagttctcagGAACATCATTTCTCCTTGTTACAACATGAGACTGAAAAGTTACGGACTGCCATAGACAAAATGCAGAGTGAATTGAGATACGAG
ATTGACAAAGTGACTGCTGGCCAACATCTAGACTTGAATTTGGAAAGAGTGAATTGAGATACGAGATTGACAAAGTGACTGCTGGCCAACATCTAGACTTGAATTTGGAAAGAGGGTAAGGTGTCCTTTATTTTTGGCCAAAGCATAATTATGATGAGATGCATTTTAGATAACATTTGTAATCAATAAAGTGTC
Intron 2 GTTGTGACTG ... ATTTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 124 | 36 | 26 |
| A2 | 22.67 | 87 | 27 | 24 |
| A3 | 22.49 | 112 | 32 | 33 |
| A4 | 23.08 | 70 | 22 | 20 |
| A5 | 20 | 26 | 6 | 7 |
| A6 | 21.64 | 143 | 30 | 49 |
| A7 | 21.66 | 311 | 82 | 90 |
| A8 | 23.44 | 467 | 128 | 158 |
| A9 | 23.66 | 355 | 97 | 123 |
| A10 | 21.97 | 277 | 70 | 86 |
>TRINITY_DN98425_c0_g1_i1 from sample A2 / Example spliced isoformCAGGAAACCAAATATTTGGAAGTTATAAATTAAGTATAGGAAGATACGAAGGAAGTCAACAAACTTGGTTTTATACGAAAATGGCCCTCTTGTGATGGAATTCTGGGAAACTTACCTTCCATTATTATTGGAGATTACGGAAACTGCATTTCAATTGAAAGCAATGATAAGTTATAAAACACACCAAGGGTCAGCTCTTG
GAGGCCAGGGGTCTCTGGCTGCATCGATTTTTAAACCTTTAAATATATTTTGTGCCCTCTTCGCCTCCTCCCCCTGTGAGCAGGTATTACATGCCAATTTACAGCTCACAAAATCCAATTCACATGTATCTATATTTTACTACCTAACTTTTGCCACAAACTTCCATAATTGCTCTCCCAAACATTCTACCATGAACATG
GCCTGGTCCTGATCTTGAATTTGAAAACGGAATTGATATAATTTTATCGAGTAGTGTTGATCGAATTGGGCGAATAGATAAAATGGTAGCAGGTGGCAGAAGAAGATTGCTGCAGCAGGCATTGAAATGGCATGGAACATTATACGATCTCATGGGCATTGAATACAGATTACATCTGCCTAATGGTAATGGTGATATGA
GTTTTAATTCAGCAAGCACAAGGCACATGTGCCAACTCGTCTCAAAGATGAATGGAAATCGCGCGTTTCTTGTGGACACTTTGGCACTGGTCAGAAGGTTGGAAGCTCAAGGTATCCCTTCTAAGCAAGCTGAGGTTATAACAGCATCTATCACTGAAGTTCTGAATCATAGCCTGGAAAATATAGCGCAATCCTTTGTT
TCAAAACCAGAAATGCAAACAAGTGGAATGATGCAAGAATCTGCTCTTTCAAAGTTCAAGGCTGAAGTTCATAGTTCTCAGGAACATCATTTCTCCTTGTTACAACATGAGACTGAAAAGTTACGGACTGCCATAGACAAAATGCAGAGTGAATTGAGATACGAGATTGACAAAGTGACTGCTGGCCAACATCTAGACTT
GAATTTGGAAAGAGGGCGAATTCGTGAAGAATTGGCAGATCAGAATGCAGAGACATCAAGCCTAACAAATAAACTTGATAGGGAAATTCATACCCTGAAGACTCAGATGGAAGCTGGAAAGTATGATGTGATCAAATACTGCATAGGTACAATAGTATCTGTAACTGCTGTTGGTCTTGGGTTGCTTCGTGTTTTTTTGT
GAATTTCATTGTATAACAGTGGCTACTTCCAAATTCTTTGGTGCCTTCTACAAGACACCCATAATGATATTTGCAAGCATTTGTAATAAATTTGAATGAACACAAAAAGTCAGGCTTATGTAAAAGGAACGGAAATAAATTTCATCAATCATACTTGGAGAGCCTTTAGGCATTGGCCAAATACAAAGAGCTTTGGATCT
ATGTTTGGAGGCCACCTATGTGTGTTAAAAGAAATAAAACATTGGGCAGTTGGTTCACCGCAATTTCATGACTCTTTCTTATGATGTTCAATGCTTCAATAGTGAGGCTTCTAAACTTTAAAAGAAC
>TRINITY_DN98425_c0_g1_i2 from sample A2 / Example unspliced isoform:CAGGAAACCAAATATTTGGAAGTTATAAATTAAGTATAGGAAGATACGAAGGAAGTCAACAAACTTGGTTTTATACGAAAATGGCCCTCTTGTGATGGAATTCTGGGAAACTTACCTTCCATTATTATTGGAGATTACGGAAACTGCATTTCAATTGAAAGCAATGATAAGTTATAAAACACACCAAGGGTCAGCTCTTG
GAGGCCAGGGGTCTCTGGCTGCATCGATTTTTAAACCTTTAAATATATTTTGTGCCCTCTTCGCCTCCTCCCCCTGTGAGCAGGTATTACATGCCAATTTACAGCTCACAAAATCCAATTCACATGTATCTATATTTTACTACCTAACTTTTGCCACAAACTTCCATAATTGCTCTCCCAAACATTCTACCATGAACATG
GCCTGGTCCTGATCTTGAATTTGAAAACGGAATTGATATAATTTTATCGAGTAGTGTTGATCGAATTGGGCGAATAGATAAAATGGTAGCAGGTGGCAGAAGAAGATTGCTGCAGCAGGCATTGAAATGGCATGGAACATTATACGATCTCATGGGCATTGAATACAGATTACATCTGCCTAATGGTAATGGTGATATGA
GTTTTAATTCAGCAAGCACAAGGCACATGTGCCAACTCGTCTCAAAGATGAATGGAAATCGCGCGTTTCTTGTGGACACTTTGGCACTGGTCAGAAGGTTGGAAGCTCAAGGTATCCCTTCTAAGCAAGCTGAGGTTATAACAGCATCTATCACTGAAGTTCTGAATCATAGCCTGGAAAATATAGCGCAATCCTTTGTT
TCAAAACCAGAAATGCAAACAAGTGGAATGATGCAAGAATCTGCTCTTTCAAAGTTCAAGGCTGAAGTTCATAGTTCTCAGGAACATCATTTCTCCTTGTTACAACATGAGACTGAAAAGTTACGGACTGCCATAGACAAAATGCAGAGTGAATTGAGgttgtgactgccactgcgtttataaaatgtgctagtttcact
gttgcctatggcagactcatactcaaccttgccattttgacagATACGAGATTGACAAAGTGACTGCTGGCCAACATCTAGACTTGAATTTGGAAAGAGGGCGAATTCGTGAAGAATTGGCAGATCAGAATGCAGAGACATCAAGCCTAACAAATAAACTTGATAGGGAAATTCATACCCTGAAGACTCAGATGGAAGCT
GGAAAGTATGATGTGATCAAATACTGCATAGGTACAATAGTATCTGTAACTGCTGTTGGTCTTGGGTTGCTTCGTGTTTTTTTGTGAATTTCATTGTATAACAGTGGCTACTTCCAAATTCTTTGGTGCCTTCTACAAGACACCCATAATGATATTTGCAAGCATTTGTAATAAATTTGAATGAACACAAAAAGTCAGGC
TTATGTAAAAGGAACGGAAATAAATTTCATCAATCATACTTGGAGAGCCTTTAGGCATTGGCCAAATACAAAGAGCTTTGGATCTATGTTTGGAGGCCACCTATGTGTGTTAAAAGAAATAAAACATTGGGCAGTTGGTTCACCGCAATTTCATGACTCTTTCTTATGATGTTCAATGCTTCAATAGTGAGGCTTCTAAA
CTTTAAAAGAAC