sp|P19951|RS142_MAIZE ----> Small ribosomal subunit protein uS11y
Intron 1 GTAATTTTTT ... TCACTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30 | 21 | 9 | 1 |
| A2 | 34.15 | 27 | 14 | 1 |
| A3 | 41.54 | 38 | 27 | 0 |
| A4 | 41.38 | 34 | 24 | 0 |
| A5 | 40 | 33 | 22 | 0 |
| A6 | 40.3 | 277 | 187 | 9 |
| A7 | 37.41 | 169 | 101 | 11 |
| A8 | 36.36 | 91 | 52 | 16 |
| A9 | 40.16 | 149 | 100 | 10 |
| A10 | 36.62 | 135 | 78 | 7 |
>TRINITY_DN42441_c0_g4_i8 from sample A9 / Example spliced isoformACCCTAAAGCCTCTCTCCGAAACCCCTACATATTCCATTCGGAAGCTCTGTTTTTAGCTCTTTAGGAGGCTTTGCCGAATCGGAGAAAGGGGGAAGACGAGCGGCTGTCTGCGACAAAGCGAGTTGCAGTTTTCACAAGAGAATCGTAACCATGTCTGGGAGGAAGAAGGCGAGAGAGCCCAAAGAGGAGACTGTTACCC
TTGGGCCAAGTGTTCGAGAGGGTGAGCACGTATTTGGAGTGGCGCATATATTCACATCCTTTAGTGGACTGTTTGATTTCTCTCAGAATTGTCAGAGCTCTCTGCACTGTTGTGCATCATTGAGTTTTCACTGTCTTCTTCAACCATCCGTGTTATCAAGATGTCCTAGAAAACCGATTAATAAGTACTGGGTGGAGAAG
TGTCAGATATTCCTCATATCTGATATCCTTGAAACGATTTACTGATATATGCTGGACTTCCCAAAGAGCATCGGCATTGAACCTTTCTCAAACATGTTCCGCACAAGTCAAACCCTATAGACTCTTGCAATTTAGACACTGAACTCATATATTTTATTATGGTTTATTGTTTCTCCACGATATAGTTAACGCATGACTAC
GAGAAGGCTATCATTATATTCGACATTGAATTTCTGTTTTTAAAAATGAATTCACTTGCATCGATTATTGGTTTGGTTTGGTGCTGAGTGGAAAAGAAAATTATATCTGACATTCTGGAAACAATTTACTGATATAGGCTGAACTTCCGAAAGAGCATCTGCATTGAACCTTTCTCATAACATGTTCCACACAAGTCAAA
CCCTATAGACTC
>TRINITY_DN42441_c0_g4_i2 from sample A9 / Example unspliced isoform:ACCCTAAAGCCTCTCTCCGAAACCCCTACATATTCCATTCGGAAGCTCTGTTTTTAGCTCTTTAGGAGGCTTTGCCGAATCGGAGAAAGGGGGAAGACGAGCGGCTGTCTGCGACAAAGCGAGTTGCAGTTTTCACAAGAGAATCGTAACCATGTCTGGGAGGAAGAAGGCGAGAGAGCCCAAAGAGGAGACTGTTACCC
TTGGGCCAAGTGTTCGAGAGGGTGAGCACGTATTTGGAGTGGCGCATATATTCACATCCTTTAGTGGACTGgtaattttttttttaaactggcatattgttacaaatttgttttagcaattggtccataaccctgcaaaataataagcgtttgacatcaatcctcatcactttcagTTTGATTTCTCTCAGAATTGTCAG
AGCTCTCTGCACTGTTGTGCATCATTGAGTTTTCACTGTCTTCTTCAACCATCCGTGTTATCAAGATGTCCTAGAAAACCGATTAATAAGTACTGGGTGGAGAAGTGTCAGATATTCCTCATATCTGATATCCTTGAAACGATTTACTGATATATGCTGGACTTCCCAAAGAGCATCGGCATTGAACCTTTCTCAAACAT
GTTCCGCACAAGTCAAACCCTATAGACTCTTGCAATTTAGACACTGAACTCATATATTTTATTATGGTTTATTGTTTCTCCACGATATAGTTAACGCATGACTACGAGAAGGCTATCATTATATTCGACATTGAATTTCTGTTTTTAAAAATGAATTCACTTGCATCGATTATTGGTTTGGTTTGGTGCTGAGTGGAAAA
GAAAATTATATCTGACATTCTGGAAACAATTTACTGATATAGGCTGAACTTCCGAAAGAGCATCTGCATTGAACCTTTCTCATAACATGTTCCACACAAGTCAAACCCTATAGACTC
Intron 2 GTAATTTTTT ... TTTCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.66 | 6.8 | 5 | 1 |
| A2 | 26.08 | 16 | 6.4 | 1 |
| A3 | 37.62 | 8.8 | 8.2 | 0 |
| A4 | 46.88 | 13.4 | 13.6 | 0 |
| A5 | 45.69 | 6.4 | 9 | 0 |
| A6 | 35.85 | 89 | 72.2 | 13 |
| A7 | 33.24 | 66 | 41.4 | 11 |
| A8 | 32.93 | 45.2 | 25 | 18 |
| A9 | 35.31 | 58 | 42.4 | 10 |
| A10 | 41.16 | 41.2 | 36.8 | 10 |
>TRINITY_DN44387_c0_g3_i3 from sample A6 / Example spliced isoformCTGGGTTGTGTTAGGGCATGATCCAGGCCTCAAGCACCATGGAGAAGCAATGCTAGGCACTGTAACTGTTAGTCATATAATCCTTCGGGGTTATCTTATGTAATTAATGTAGGTTAATAAATTGTGCAGTTTAACTGTCAACCGTTTCCTCATTTGTATTTATATGGATGAGCTTCCAATAATTCAGATTTTCATTGTGG
AGTTATTTAATACGGTACTTCAGTGGTATCAGAGCCACGAGGTTCTAACTCCATGATTGTTTGAGGTTCTTTCTGGACGCTGATTGTTTAAGGTTCTACCGATTGTCAGATATCAAGAGGTTTTTGGGTCCTCTGCGCCCTTCCGCTGGAAAGCGTCCACAGAAAAAAAAAGACTTCAGGCTGTCTGGACTGGTCTGCTC
CATGATACATACAACGGTAGTAGCGTGCTCCTCTGGCTTCGCCCTGTCAACTTAGGTTATTGTGCACCGTACCCAAATTGATCACAACAACAGTGATCGCTCCTCTTCTACCGCCTCGAGAAGGAAAATTCGCTCCAGATCGAGGTTGAAAACGACGATTTCAGTGAGGGTTCAGTCTGTGGTGAATTACTGTGCACAAG
CAGCGAATCTCTGCGTGTGTGATGCCCTTTTGGAGGCTTTTCCGAATCGGAGAAAGAGGGAAGACAAGCGGCTGTCTGCAACAAAGCGAGTTGCAGTTTCCACAGGAGAGTCGTAGCCATGTCTGGGAGGAAGAAGGTGAGAGAGCCCAAAGAGGAGACTGTTATCCTTGGGCCAAGTGTTCGAGAGAGTGAGCACGTAT
TTCGAGTGGCGCATATATTCGCATCCTTTAGTGGACTGAATTGTCAGAGCTCTCTGCACTGTTGTGCATCATTGAGTTTTCACTGTCTTCTTCAACCATCCGTGTTATCAAGATGTCCTAGAAAACCGATTAATAAGTACTGGGTGGAGAAGTGTCAGATATTCCTCATATCTGATATCCTTGAAACGATTTACTGATAT
ATGCTGGACTTCCCAAAGAGCATCGGCATTGAACCTTTCTCAAACATGTTCCGCACAAGTCAAACCCTATAGACTCTTGCAATTTAGACACTGAACTCATATATTTTATTATGGTTTATTGTTTCTCCACGATATAGTTAACGCATGACTACGAGAAGGCTATCATTATATTCGACATTGAATTTCTGTTTTTAAAAATG
AATTCACTTGCATCGATTATTGGTTTGGTTTGGTGCTGAGTGGAAAAGAAAATTATATCTGACATTCTGGAAACAATTTACTGATATAGGCTGAACTTCCGAAAGAGCATCTGCATTGAACCTTTCTCATAACATGTTCCGCACAAGTCATACCCTATAGACTCTTGGCAATTTAGACACTGAACT
>TRINITY_DN44387_c0_g3_i2 from sample A6 / Example unspliced isoform:CTGGGTTGTGTTAGGGCATGATCCAGGCCTCAAGCACCATGGAGAAGCAATGCTAGGCACTGTAACTGTTAGTCATATAATCCTTCGGGGTTATCTTATGTAATTAATGTAGGTTAATAAATTGTGCAGTTTAACTGTCAACCGTTTCCTCATTTGTATTTATATGGATGAGCTTCCAATAATTCAGATTTTCATTGTGG
AGTTATTTAATACGGTACTTCAGTGGTATCAGAGCCACGAGGTTCTAACTCCATGATTGTTTGAGGTTCTTTCTGGACGCTGATTGTTTAAGGTTCTACCGATTGTCAGATATCAAGAGGTTTTTGGGTCCTCTGCGCCCTTCCGCTGGAAAGCGTCCACAGAAAAAAAAAGACTTCAGGCTGTCTGGACTGGTCTGCTC
CATGATACATACAACGGTAGTAGCGTGCTCCTCTGGCTTCGCCCTGTCAACTTAGGTTATTGTGCACCGTACCCAAATTGATCACAACAACAGTGATCGCTCCTCTTCTACCGCCTCGAGAAGGAAAATTCGCTCCAGATCGAGGTTGAAAACGACGATTTCAGTGAGGGTTCAGTCTGTGGTGAATTACTGTGCACAAG
CAGCGAATCTCTGCGTGTGTGATGCCCTTTTGGAGGCTTTTCCGAATCGGAGAAAGAGGGAAGACAAGCGGCTGTCTGCAACAAAGCGAGTTGCAGTTTCCACAGGAGAGTCGTAGCCATGTCTGGGAGGAAGAAGGTGAGAGAGCCCAAAGAGGAGACTGTTACCCTTGGGCCAAGTGTTCGAGAGGGTGAGCACGTAT
TTGGAGTGGCGCATATATTCACATCCTTTAGTGGACTGgtaatttttttttttaaactggcatattgttacaaatttgtttgagcaattggtccataaccctgcaaaattattagcgtttgacatcaatcctcatcactttcagtttgatttctctcagAATTGTCAGAGCTCTCTGCACTGTTGTGCATCATTGAGTTT
TCACTGTCTTCTTCAACCATCCGTGTTATCAAGATGTCCTAGAAAACCGATTAATAAGTACTGGGTGGAGAAGTGTCAGATATTCCTCATATCTGATATCCTTGAAACGATTTACTGATATATGCTGGACTTCCCAAAGAGCATCGGCATTGAACCTTTCTCAAACATGTTCCGCACAAGTCAAACCCTATAGACTCTTG
CAATTTAGACACTGAACTCATATATTTTATTATGGTTTATTGTTTCTCCACGATATAGTTAACGCATGACTACGAGAAGGCTATCATTATATTCGACATTGAATTTCTGTTTTTAAAAATGAATTCACTTGCATCGATTATTGGTTTGGTTTGGTGCTGAGTGGAAAAGAAAATTATATCTGACATTCTGGAAACAATTT
ACTGATATAGGCTGAACTTCCGAAAGAGCATCTGCATTGAACCTTTCTCATAACATGTTCCGCACAAGTCATACCCTATAGACTCTTGGCAATTTAGACACTGAACT
Intron 3 GTAATTTTTT ... TCACTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.62 | 6 | 5 | 1 |
| A2 | 31.22 | 13 | 6 | 1 |
| A3 | 40.4 | 8 | 7.3 | 0 |
| A4 | 52.22 | 11 | 13.3 | 0 |
| A5 | 51.67 | 6 | 8.7 | 0 |
| A6 | 43.73 | 69 | 67.7 | 9 |
| A7 | 38.39 | 55 | 40 | 11 |
| A8 | 37.84 | 39 | 24.7 | 16 |
| A9 | 42.78 | 46 | 40 | 10 |
| A10 | 45.13 | 35 | 34.3 | 7 |
>TRINITY_DN44387_c0_g3_i1 from sample A6 / Example spliced isoformCTGGGTTGTGTTAGGGCATGATCCAGGCCTCAAGCACCATGGAGAAGCAATGCTAGGCACTGTAACTGTTAGTCATATAATCCTTCGGGGTTATCTTATGTAATTAATGTAGGTTAATAAATTGTGCAGTTTAACTGTCAACCGTTTCCTCATTTGTATTTATATGGATGAGCTTCCAATAATTCAGATTTTCATTGTGG
AGTTATTTAATACGGTACTTCAGTGGTATCAGAGCCACGAGGTTCTAACTCCATGATTGTTTGAGGTTCTTTCTGGACGCTGATTGTTTAAGGTTCTACCGATTGTCAGATATCAAGAGGTTTTTGGGTCCTCTGCGCCCTTCCGCTGGAAAGCGTCCACAGAAAAAAAAAGACTTCAGGCTGTCTGGACTGGTCTGCTC
CATGATACATACAACGGTAGTAGCGTGCTCCTCTGGCTTCGCCCTGTCAACTTAGGTTATTGTGCACCGTACCCAAATTGATCACAACAACAGTGATCGCTCCTCTTCTACCGCCTCGAGAAGGAAAATTCGCTCCAGATCGAGGTTGAAAACGACGATTTCAGTGAGGGTTCAGTCTGTGGTGAATTACTGTGCACAAG
CAGCGAATCTCTGCGTGTGTGATGCCCTTTTGGAGGCTTTTCCGAATCGGAGAAAGAGGGAAGACAAGCGGCTGTCTGCAACAAAGCGAGTTGCAGTTTCCACAGGAGAGTCGTAGCCATGTCTGGGAGGAAGAAGGTGAGAGAGCCCAAAGAGGAGACTGTTATCCTTGGGCCAAGTGTTCGAGAGAGTGAGCACGTAT
TTCGAGTGGCGCATATATTCGCATCCTTTAGTGGACTGTTTGATTTCTCTCAGAATTGTCAGAGCTCTCTGCACTGTTGTGCATCATTGAGTTTTCACTGTCTTCTTCAACCATCCGTGTTATCAAGATGTCCTAGAAAACCGATTAATAAGTACTGGGTGGAGAAGTGTCAGATATTCCTCATATCTGATATCCTTGAA
ACGATTTACTGATATATGCTGGACTTCCCAAAGAGCATCGGCATTGAACCTTTCTCAAACATGTTCCGCACAAGTCAAACCCTATAGACTCTTGCAATTTAGACACTGAACTCATATATTTTATTATGGTTTATTGTTTCTCCACGATATAGTTAACGCATGACTACGAGAAGGCTATCATTATATTCGACATTGAATTT
CTGTTTTTAAAAATGAATTCACTTGCATCGATTATTGGTTTGGTTTGGTGCTGAGTGGAAAAGAAAATTATATCTGACATTCTGGAAACAATTTACTGATATAGGCTGAACTTCCGAAAGAGCATCTGCATTGAACCTTTCTCATAACATGTTCCGCACAAGTCATACCCTATAGACTCTTGGCAATTTAGACACTGAAC
T
>TRINITY_DN44387_c0_g3_i2 from sample A6 / Example unspliced isoform:CTGGGTTGTGTTAGGGCATGATCCAGGCCTCAAGCACCATGGAGAAGCAATGCTAGGCACTGTAACTGTTAGTCATATAATCCTTCGGGGTTATCTTATGTAATTAATGTAGGTTAATAAATTGTGCAGTTTAACTGTCAACCGTTTCCTCATTTGTATTTATATGGATGAGCTTCCAATAATTCAGATTTTCATTGTGG
AGTTATTTAATACGGTACTTCAGTGGTATCAGAGCCACGAGGTTCTAACTCCATGATTGTTTGAGGTTCTTTCTGGACGCTGATTGTTTAAGGTTCTACCGATTGTCAGATATCAAGAGGTTTTTGGGTCCTCTGCGCCCTTCCGCTGGAAAGCGTCCACAGAAAAAAAAAGACTTCAGGCTGTCTGGACTGGTCTGCTC
CATGATACATACAACGGTAGTAGCGTGCTCCTCTGGCTTCGCCCTGTCAACTTAGGTTATTGTGCACCGTACCCAAATTGATCACAACAACAGTGATCGCTCCTCTTCTACCGCCTCGAGAAGGAAAATTCGCTCCAGATCGAGGTTGAAAACGACGATTTCAGTGAGGGTTCAGTCTGTGGTGAATTACTGTGCACAAG
CAGCGAATCTCTGCGTGTGTGATGCCCTTTTGGAGGCTTTTCCGAATCGGAGAAAGAGGGAAGACAAGCGGCTGTCTGCAACAAAGCGAGTTGCAGTTTCCACAGGAGAGTCGTAGCCATGTCTGGGAGGAAGAAGGTGAGAGAGCCCAAAGAGGAGACTGTTACCCTTGGGCCAAGTGTTCGAGAGGGTGAGCACGTAT
TTGGAGTGGCGCATATATTCACATCCTTTAGTGGACTGgtaatttttttttttaaactggcatattgttacaaatttgtttgagcaattggtccataaccctgcaaaattattagcgtttgacatcaatcctcatcactttcagTTTGATTTCTCTCAGAATTGTCAGAGCTCTCTGCACTGTTGTGCATCATTGAGTTT
TCACTGTCTTCTTCAACCATCCGTGTTATCAAGATGTCCTAGAAAACCGATTAATAAGTACTGGGTGGAGAAGTGTCAGATATTCCTCATATCTGATATCCTTGAAACGATTTACTGATATATGCTGGACTTCCCAAAGAGCATCGGCATTGAACCTTTCTCAAACATGTTCCGCACAAGTCAAACCCTATAGACTCTTG
CAATTTAGACACTGAACTCATATATTTTATTATGGTTTATTGTTTCTCCACGATATAGTTAACGCATGACTACGAGAAGGCTATCATTATATTCGACATTGAATTTCTGTTTTTAAAAATGAATTCACTTGCATCGATTATTGGTTTGGTTTGGTGCTGAGTGGAAAAGAAAATTATATCTGACATTCTGGAAACAATTT
ACTGATATAGGCTGAACTTCCGAAAGAGCATCTGCATTGAACCTTTCTCATAACATGTTCCGCACAAGTCATACCCTATAGACTCTTGGCAATTTAGACACTGAACT