NA ----> NA
Intron 1 GTTGGGATCA ... TTTCTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.55 | 5 | 6 | 6 |
| A2 | 26.67 | 11 | 8 | 0 |
| A3 | 47.83 | 6 | 6 | 5 |
| A4 | 61.9 | 4 | 12 | 1 |
| A5 | 41.18 | 5 | 6 | 1 |
| A6 | 60 | 1 | 2 | 1 |
| A7 | 100 | 0 | 0 | 1 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 33.33 | 2 | 0 | 2 |
| A10 | 33.33 | 1 | 1 | 0 |
>TRINITY_DN92112_c0_g1_i2 from sample A3 / Example spliced isoformGCCATGTTGGACGGTGGCGTGGCGGACAACGTGTGAGTTAATAATGAGAAGGAGAGATGCCGGGGAAGAAGAGGACAGGGATGCTTCAACAAAGCTGCGGAAGTTTTAGCGATCTCCGCCGTTTTGGATTAGACTCCGTGCATTTTTTGTGAGGAATTTCACGAATCCGGTGCAATAGGCATGATCCTGAGATCTCTCCT
GTTTGGATGATGCCGGATTTGCCCTGGTTTGGCTTCAAAATACCTTCGAGGGTTTTCATTTATCGACCGCAGGAGGGAAGCTTTTAGCGTACATAAATGCTCGGGTTTGCTGCAATATCAGAAGCTTTAGCGAATTAAAGCTATTGGAGACAGCAGATGCTTGAACTGCTCAGAGTAATTTCAATGATATACAGAGGAGC
ACAGCATGCTTGGTATAGATGGCAGAGCTGTGCAAAAGGCAAACAACAATAAAAATGTTGCATATTTCTCTGTACCTGGGATGAAGTGAAGTTCTGATTGACACAGATTTCTGAAACCAAAACCATGTACCAAACTAACTCAAATTATTGCAGACAGTAGCTTGCACTTGCTAAGTTCTAGACACTGAAACTGGGAAAAC
CGGTTTGTCCAAGAGGAATGAAGTGAAGATTTTGCTGTACCAACATTACTTTAACTGGTGGGTAGTACAACCCAACCAATATGGGGTCTGTCTGTTGTGTGGCTGCAAGGCCACAGGAGTTGCCACTTTACAATGATAGACGACCACTTGGTCGGCGGGAGTCACATTGGCGGACAAATGGGGGTTTCTCACCTTCAATT
CACCCTCATTGGGACAATAAATTACAGGCAGAAGATGATGTGGCAACTACCAGTTCTGTACAATTTCAGAGGGTTCTCTCATCAAACAATAGAGGGAACAGAGTCCTGAGTTCTCGTTTTTTGAACCATCAGAGAACTCTATCAGAAAATGTTCCAAATGAAGGAAGCCCTTCAGATAGCTTTCAAGCACCTAAGTGGTT
AAACTCACCTATTCATGTTAGAGATACTGGAGATTTTGTCCATGC
>TRINITY_DN92112_c0_g1_i1 from sample A3 / Example unspliced isoform:GCCATGTTGGACGGTGGCGTGGCGGACAACGTGTGAGTTAATAATGAGAAGGAGAGATGCCGGGGAAGAAGAGGACAGGGATGCTTCAACAAAGCTGCGGAAGTTTTAGCGATCTCCGCCGTTTTGGATTAGACTCCGTGCATTTTTTGTGAGGAATTTCACGAATCCGGTGCAATAGGCATGATCCTGAGATCTCTCCT
GTTTGGATGATGCCGGATTTGCCCTGGTTTGGCTTCAAAATACCTTCGAGGGTTTTCATTTATCGACCGCAGGAGGGAAGCTTTTAGCGTACATAAATGCTCGGGTTTGCTGCAATATCAGAAGCTTTAGCGAATTAAAGCTATTGGAGACAGCAGATGCTTGAACTGCTCAGAGTAATTTCAATGATATACAGAGGAGC
ACAGCATGCTTGGTATAGATGGCAGAGCTGTGCAAAAGGCAAACAACAATAAAAATGTTGCATATTTCTCTGTACCTGGGATGAAGTGAAGTTCTGATTGACACAGATTTCTGAAACCAAAACCATGTACCAAACTAACTCAAATTATTGCAGACAGTAGCTTGCACTTGCTAAGTTCTAGACACTGAAACCAGGAAAAC
CGGTTTGTCCAAGAGgttgggatcacactgattcctggattttagggcacatttactatagatatgtttttgaaaaaatatttccaataaattttggcacctatggtggtagttagtgaagcctggcactggattttgagctttataacatgaaatctctcttcattttatttcttatagGAATGAAGTGAAGATTTTGC
TGTACCAACATTACTTTAACTGGTGGGTAGTACAACCCAACCAATATGGGGTCTGTCTGTTGTGTGGCTGCAAGGCCACAGGAGTTGCCACTTTACAATGATAGACGACCACTTGGTCGGCGGGAGTCACATTGGCGGACAAATGGGGGTTTCTCACCTTCAATTCACCCTCATTGGGACAATAAATTACAGGCAGAAGA
TGATGTGGCAACTACCAGTTCTGTACAATTTCAGAGGGTTCTCTCATCAAACAATAGAGGGAACAGAGTCCTGAGTTCTCGTTTTTTGAACCATCAGAGAACTCTATCAGAAAATGTTCCAAATGAAGGAAGCCCTTCAGATAGCTTTCAAGCACCTAAGTGGTTAAACTCACCTATTCATGTTAGAGATACTGGAGATT
TTGTCCATGC
Intron 2 GTACCAAACT ... TTTCTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 6 | 3 | 6 |
| A2 | 64.29 | 5 | 18 | 0 |
| A3 | 62.5 | 3 | 5 | 5 |
| A4 | 50 | 2 | 3 | 1 |
| A5 | 48.15 | 7 | 12 | 1 |
| A6 | 33.33 | 3 | 2 | 1 |
| A7 | 100 | 0 | 1 | 1 |
| A8 | 100 | 0 | 4 | 0 |
| A9 | 42.86 | 2 | 1 | 2 |
| A10 | 100 | 0 | 1 | 0 |
>TRINITY_DN97026_c0_g1_i4 from sample A1 / Example spliced isoformGTTGGACGGTGGCGTGGCGGACAACGTGTGAGTTAATAATGAGAAGGAGAGATGCCGGGGAAGAAGAGGACAGGGATGCTTCAACAAAGCTGCGGAAGTTTTAGCGATCTCCGCCGTTTTGGATTAGACTCCGTGCATTTTTTGTGAGGAATTTCACGAATCCGGTGCAATAGGCATGATCCTGAGATCTCTCCTGTTTG
GATGATGCCGGATTTGCCCTGGTTTGGCTTCAAAATACCTTCGAGGGTTTTCATTTATCGACCGCAGGAGGGAAGCTTTTAGCGTACATAAATGCTCGGGTTTGCTGCAATATCAGAAGCTTTAGCGAATTAAAGCTATTGGAGACAGCAGATGCTTGAACTGCTCAGAGTAATTTCAATGATATACAGAGGAGCACAGC
ATGCTTGGTATAGATGGCAGAGCTGTGCAAAAGGCAAACAACAATAAAAATGTTGCATATTTCTCTGTACCTGGGATGAAGTGAAGTTCTGATTGACACAGATTTCTGAAACCAAAACCATGAATGAAGTGAAGATTTTGCTGTACCAACATTACTTTAACTGGTGGGTAGTACAACCCAACCAATATGGGGTCTGTCTG
TTGTGTGGCTGCAAGGCCACAGGAGTTGCCACTTTACAATGATAGACGACCACTTGGCCGGCGGGAGTCACATTGGCG
>TRINITY_DN97026_c0_g1_i1 from sample A1 / Example unspliced isoform:GTTGGACGGTGGCGTGGCGGACAACGTGTGAGTTAATAATGAGAAGGAGAGATGCCGGGGAAGAAGAGGACAGGGATGCTTCAACAAAGCTGCGGAAGTTTTAGCGATCTCCGCCGTTTTGGATTAGACTCCGTGCATTTTTTGTGAGGAATTTCACGAATCCGGTGCAATAGGCATGATCCTGAGATCTCTCCTGTTTG
GATGATGCCGGATTTGCCCTGGTTTGGCTTCAAAATACCTTCGAGGGTTTTCATTTATCGACCGCAGGAGGGAAGCTTTTAGCGTACATAAATGCTCGGGTTTGCTGCAATATCAGAAGCTTTAGCGAATTAAAGCTATTGGAGACAGCAGATGCTTGAACTGCTCAGAGTAATTTCAATGATATACAGAGGAGCACAGC
ATGCTTGGTATAGATGGCAGAGCTGTGCAAAAGGCAAACAACAATAAAAATGTTGCATATTTCTCTGTACCTGGGATGAAGTGAAGTTCTGATTGACACAGATTTCTGAAACCAAAACCATgtaccaaactaactcaaattattgcagacagtagcttgcacttgctaagttctagacactgaaactgggaaaaccggtt
tgtccaagaggttgggatcacactgattcctggattttagggcacatttactatagatatgtttttgaaaaaatatttccaataaattttggcacctatggtggtagttagtgaagcctggcactggattttgagctttataacatgaaatctctcttcattttatttcttatagGAATGAAGTGAAGATTTTGCTGTAC
CAACATTACTTTAACTGGTGGGTAGTACAACCCAACCAATATGGGGTCTGTCTGTTGTGTGGCTGCAAGGCCACAGGAGTTGCCACTTTACAATGATAGACGACCACTTGGCCGGCGGGAGTCACATTGGCG