NA ----> NA

Intron 1 GTATACATCT ... TTTTTATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	4	4
A2	57.14	3	4	4
A3	100	0	12	13
A4	100	0	2	2
A5	100	0	2	2
A6	100	0	0	2
A7	-1	0	0	0
A8	33.33	1	0	1
A9	100	0	3	6
A10	100	0	2	0

>TRINITY_DN100185_c0_g1_i3 from sample A2 / Example spliced isoform

GGAGAACTTCTTCCTCGACGGAGCAGGTATACATCTTTCTAATAGTACAAATATAATAAGAGAAAAGAGCTTTTATTTGCTTTGTTTTTCCATTATTAATAACTTGGTTTGTTTTATATAATGAAATTTATATTTGATGCAGAACGTTGATTGGGAAATACACCCGTCGAATGTTGATCAGACGACAACACCCTCGGGGC
AATAGGCTAGTTCCGTAAGGTCGGCCACACCAGGGTCCGCGCAACGGGGTGTTGTTAGGGGCAGCTCCCAGTTATTAGCAGATCGGGGCAAGTCACCTATGAGCATCAAT

>TRINITY_DN100185_c0_g1_i2 from sample A2 / Example unspliced isoform:

GTTTCAATGAATATTTTGGTTTCGTTTACGGAATTTTTGAGTCTATGTTTTTGATGTAGGCTAGTTCCGTAAGGTCGGCCACACCAGGGTCCGCGCAACGGgtatacatctttgtaatattaaaaatataatatgaataataatttttttgatgtgttttctcatgaatacttttggaatcgtttaaaggtgactttcac
tatgtttttttattagGGTGTTGTTAGGGGCAGCTCCCAGTTATTAGCAGATCGGGGCAAGTCACCTATGAGCATCAAT

Intron 2 GTATACATCT ... TTTTAATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	3	8
A2	50	3	1	5
A3	100	0	11	14
A4	46.67	4	2	5
A5	100	0	2	6
A6	53.85	3	0	7
A7	100	0	0	2
A8	50	1	0	2
A9	75	2	6	6
A10	100	0	2	0

>TRINITY_DN25446_c0_g1_i1 from sample A8 / Example spliced isoform

CCTTCAGGTTTTTCAAGTTCTAGAACGTTGATTGGGAAATACACCCGTCGAATGTTGATCAGACGACAACACCCTCGGGGCAATAGGCTAGTTCCGTAAGGTCGGCCACACCAGGGTCCGCGCAACGGGGTGTTGTTAGGGGCAGCTCCCAGTTATTAGCAGATCGGGGCAAGTCACCTATGACCATTGATCCAATGAGT
GGATCGCGATCCTCGAGGTCGCAAGTATAATTCATTTCAATTGTACCAATATAATACGTAGCATAATGTTAATTTTGTTATGTATTTTTCGTGTGAAAA

>TRINITY_DN25446_c0_g1_i2 from sample A8 / Example unspliced isoform:

CCTTCAGGTTTTTCAAGTTCTAGAACGTTGATTGGGAAATACACCCGTCGAATGTTGATCAGACGACAACACCCTCGGGGCAATAGGCTAGTTCCGTAAGGTCGGCCACACCAGGGTCCGCGCAACGGgtatacatctttgtaatattaaaaatataatatgaataataatttttttgatgtgttttctcatgaatagtt
ttgggattgtttaggtgactttcactattttttaattagGGTGTTGTTAGGGGCAGCTCCCAGTTATTAGCAGATCGGGGCAAGTCACCTATGACCATTGATCCAATGAGTGGATCGCGATCCTCGAGGTCGCAAGTATAATTCATTTCAATTGTACCAATATAATACGTAGCATAATGTTAATTTTGTTATGTATTTTT
CGTGTGAAAA