sp|Q9LV04|PAP14_ARATH ----> Probable plastid-lipid-associated protein 14, chloroplastic
Intron 1 GTGAACTGAA ... CTTCTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.58 | 29 | 8 | 13 |
| A2 | 28 | 9 | 2 | 5 |
| A3 | 33.33 | 5 | 4 | 1 |
| A4 | 44 | 7 | 10 | 1 |
| A5 | 27.27 | 4 | 2 | 1 |
| A6 | 35.38 | 21 | 12 | 11 |
| A7 | 35.38 | 21 | 15 | 8 |
| A8 | 21.74 | 18 | 6 | 4 |
| A9 | 35.52 | 17.5 | 8.2 | 11 |
| A10 | 25.71 | 13 | 5 | 4 |
>TRINITY_DN41543_c0_g1_i6 from sample A6 / Example spliced isoformGGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGGTACAGCGGCTTTCCAGCAAAGCAAAAAAAAATGATACCCCTAGTAATTAAGCAAGGATATGGGGATGAAGATTCTCTTTCTTAGCAGTTGGCTTAGTCCTTTGAAAAGGTGCTTACTCTTCCTTTGGGTT
GGTTGTTGCTCAGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCAC
TGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTA
ATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCA
ATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGTGTAACAGGTTGGCATTCTACATTGACCTAATGGAAAGGTTGAATCCCAATTCAGATCGAAAGAACTGGAGTGCATTACTGTCTGGAAAATGGTGTTTATTGTATCATAGAAGGAGGCAAATAGGCCTA
ACAATCTGTGAGGCTTCTCCGAGAGTTCTTATTGGAAATGTTTATCTTAGTTTTCTGTCAGCCAAAGACAACAAAAGTAGTTTTTCTATGGTAGCTAATATTGATTTCACTGTCATGGTTGGTCCCCATTGGTCCCATGATAAAAGGGGCAAAGAAGGAAATTTTCACATCAGTTCAAATCTTGAAATGATAAATGGAGA
GAGAATTTATCAAATGGAATCCTAGGTTATAGACCAAGGAGCTATTCAGGACAATAACAGTGAGAGTAATGAGAGCATCCTCACAACCTCTCAAGTGCTAGTGACATGGAAAAGTTATAGAAATGGACAATGGAGAAAAGTAAGCCAGTTCCTACCAAAAGAAACATCTTCAAGTCTTCCTGTGGTGAAGTTGGTCTCAT
TAGATGTAGAGGTGACAATGAATCGTGACTATGCTACCAAAGGTGCTTCCTTACCAAGTAAGGTTCAGCTTGAAGTTCGCCTGCAGGTTCCCCAGGAAATGTTTGACATATCAAAACTGGTCCATGGGACATATGTTGATTCAAGGTTGTTAATCTTGTGAGTTGTCACAGGTTCATCTCTTCTCTTCACTTGCATATTT
GGAAGTTGACTACTTCAAATGTACCCTGCAGTCATTGCTAGGAAGACTGCTCAAAGTTGCATCTCTTTGCTCATTCTGATATTGGTCAAGCATTCTTTCATTTTATGTGTTGGGGTGTACATTTCAAATTTGTCATTCTTTAAGAAGTATGAATGTTGTATATAAATGCCTTGTTTTTCACTCCATTGAAAATTAAAATT
GGTGTTTATGTCATCTGGTGTAAGTTATGCTGTATGAGGCCGGTGATGGTTAGATTGTCTCAGTGATCTTCACCTTATCAGGGTGGTTCTTATATGTATATTAAGGTTTATTATTAAA
>TRINITY_DN41543_c0_g1_i2 from sample A6 / Example unspliced isoform:GAGGGAATCAATTTTCCAGGAGGTGTAACAGGTTGGCATTCTACATTGACCTAATGGAAAGGTTGAATCCCAATTCAGATCGAAAGAACTGGAGTGCATTACTGTCTGGAAAATGGTGTTTATTGTATCATAGAAGGAGGCAAATAGGCCTAACAATCTGTGAGgtgaactgaacaacttacatgtcccttgttttcttt
tagtgtcacgtgcacctcatgactctgttaacttacatggcagttgcattcttcttgtagGCTTCTCCGAGAGTTCTTATTGGAAATGTTTATCTTAGTTTTCTGTCAGCCAAAGACAACAAAAGTAGTTTTTCTATGGTAGCTAATATTGATTTCACTGTCATGGTTGGTCCCCATTGGTCCCATGATAAAAGGGGCAA
AGAAGGAAATTTTCACATCAGTTCAAATCTTGAAATGATAAATGGAGAGAGAATTTATCAAATGGAATCCTAGGTTATAGACCAAGGAGCTATTCAGGACAATAACAGTGAGAGTAATGAGAGCATCCTCACAACCTCTCAAGTGCTAGTGACATGGAAAAGTTATAGAAATGGACAATGGAGAAAAGTAAGCCAGTTCC
TACCAAAAGAAACATCTTCAAGTCTTCCTGTGGTGAAGTTGGTCTCATTAGATGTAGAGGTGACAATGAATCGTGACTATGCTACCAAAGGTGCTTCCTTACCAAGTAAGGTTCAGCTTGAAGTTCGCCTGCAGGTTCCCCAGGAAATGTTTGACATATCAAAACTGGTCCATGGGACATATGTTGATTCAAGGTTGTTA
ATCTTGTGAGTTGTCACAGGTTCATCTCTTCTCTTCACTTGCATATTTGGAAGTTGACTACTTCAAATGTACCCTGCAGTCATTGCTAGGAAGACTGCTCAAAGTTGCATCTCTTTGCTCATTCTGATATTGGTCAAGCATTCTTTCATTTTATGTGTTGGGGTGTACATTTCAAATTTGTCATTCTTTAAGAAGTATGA
ATGTTGTATATAAATGCCTTGTTTTTCACTCCATTGAAAATTAAAATTGGTGTTTATGTCATCTGGTGTAAGTTATGCTGTATGAGGCCGGTGATGGTTAGATTGTCTCAGTGATCTTCACCTTATCAGGGTGGTTCTTATATGTATATTAAGGTTTATTATTAAA
Intron 2 GTAATCATTT ... TATGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.88 | 57.5 | 15 | 2 |
| A2 | 6.3 | 53 | 5 | 2.1 |
| A3 | 10.85 | 37.5 | 8 | 1.1 |
| A4 | 9.9 | 45.5 | 8 | 2 |
| A5 | 0 | 13 | 0 | 0 |
| A6 | 42.82 | 21.5 | 17 | 14.9 |
| A7 | 31.38 | 22 | 11 | 9.1 |
| A8 | 34.8 | 18.5 | 13 | 6.8 |
| A9 | 51.7 | 18.5 | 24 | 15.5 |
| A10 | 38.34 | 20 | 17 | 7.9 |
>TRINITY_DN41543_c0_g1_i4 from sample A6 / Example spliced isoformGGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGGTACAGCGGCTTTCCAGCAAAGCAAAAAAAAATGATACCCCTAGTAATTAAGCAAGGATATGGGGATGAAGATTCTCTTTCTTAGCAGTTGGCTTAGTCCTTTGAAAAGGTGCTTACTCTTCCTTTGGGTT
GGTTGTTGCTCAGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCAC
TGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTA
ATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCA
ATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGGTCGATAAACTTGCATTGGATTCTTTACATGAAAATGTGTATGCATACTTGGAAAACTTGAAGCCCTGGCTTATGGTGTGTTTGATATCCTAGACTATATGTCTTTTCCTACTTGATCTGAAGCGTTTA
TGTATTTAGTAATTTACATTGAGGTGCTTATACAAGCTTGCGAGCAAATTTGGTTCTCTTTGGATTTGTTATATAATATTAG
>TRINITY_DN41543_c0_g1_i10 from sample A6 / Example unspliced isoform:GGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGGTACAGCGGCTTTCCAGCAAAGCAAAAAAAAATGATACCCCTAGTAATTAAGCAAGGATATGGGGATGAAGATTCTCTTTCTTAGCAGTTGGCTTAGTCCTTTGAAAAGGTGCTTACTCTTCCTTTGGGTT
GGTTGTTGCTCAGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCAC
TGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTA
ATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCA
ATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGgtaatcatttttggcaacaattttgcttgtaagaaaacgatttaatgtatttcatttttattttagccaaatgacttttatgttgcagGTCGATAAACTTGCATTGGATTCTTTACATGAAAATGTGTA
TGCATACTTGGAAAACTTGAAGCCCTGGCTTATGGTGTGTTTGATATCCTAGACTATATGTCTTTTCCTACTTGATCTGAAGCGTTTATGTATTTAGTAATTTACATTGAGGTGCTTATACAAGCTTGCGAGCAAATTTGGTTCTCTTTGGATTTGTTATATAATATTAG
Intron 3 GCTTCTCCGA ... ATGATAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 6 | 29 | 7 |
| A2 | 88.24 | 1 | 9 | 6 |
| A3 | 50 | 4 | 5 | 3 |
| A4 | 58.33 | 5 | 7 | 7 |
| A5 | 50 | 3 | 4 | 2 |
| A6 | 64.86 | 13 | 21 | 27 |
| A7 | 58.76 | 20 | 21 | 36 |
| A8 | 60 | 17 | 18 | 33 |
| A9 | 55.55 | 15 | 17.5 | 20 |
| A10 | 69.23 | 4 | 13 | 5 |
>TRINITY_DN41543_c0_g1_i14 from sample A6 / Example spliced isoformGGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGGTACAGCGGCTTTCCAGCAAAGCAAAAAAAAATGATACCCCTAGTAATTAAGCAAGGATATGGGGATGAAGATTCTCTTTCTTAGCAGTTGGCTTAGTCCTTTGAAAAGGTGCTTACTCTTCCTTTGGGTT
GGTTGTTGCTCAGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCAC
TGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTA
ATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCA
ATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGTGTAACAGGTTGGCATTCTACATTGACCTAATGGAAAGGTTGAATCCCAATTCAGATCGAAAGAACTGGAGTGCATTACTGTCTGGAAAATGGTGTTTATTGTATCATAGAAGGAGGCAAATAGGCCTA
ACAATCTGTGAGGGGCAAAGAAGGAAATTTTCACATCAGTTCAAATCTTGAAATGATAAATGGAGAGAGAATTTATCAAATGGAATCCTAGGTTATAGACCAAGGAGCTATTCAGGACAATAACAGTGAGAGTAATGAGAGCATCCTCACAACCTCTCAAGTGCTAGTGACATGGAAAAGTTATAGAAATGGACAATGGA
GAAAAGTAAGCCAGTTCCTACCAAAAGAAACATCTTCAAGTCTTCCTGTGGTGAAGTTGGTCTCATTAGATGTAGAGGTGACAATGAATCGTGACTATGCTACCAAAGGTGCTTCCTTACCAAGTAAGGTTCAGCTTGAAGTTCGCCTGCAGGTTCCCCAGGAAATGTTTGACATATCAAAACTGGTCCATGGGACATAT
GTTGATTCAAGGTTGTTAATCTTGTGAGTTGTCACAGGTTCATCTCTTCTCTTCACTTGCATATTTGGAAGTTGACTACTTCAAATGTACCCTGCAGTCATTGCTAGGAAGACTGCTCAAAGTTGCATCTCTTTGCTCATTCTGATATTGGTCAAGCATTCTTTCATTTTATGTGTTGGGGTGTACATTTCAAATTTGTC
ATTCTTTAAGAAGTATGAATGTTGTATATAAATGCCTTGTTTTTCACTCCATTGAAAATTAAAATTGGTGTTTATGTCATCTGGTGTAAGTTATGCTGTATGAGGCCGGTGATGGTTAGATTGTCTCAGTGATCTTCACCTTATCAGGGTGGTTCTTATATGTATATTAAGGTTTATTATTAAA
>TRINITY_DN41543_c0_g1_i6 from sample A6 / Example unspliced isoform:GGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGGTACAGCGGCTTTCCAGCAAAGCAAAAAAAAATGATACCCCTAGTAATTAAGCAAGGATATGGGGATGAAGATTCTCTTTCTTAGCAGTTGGCTTAGTCCTTTGAAAAGGTGCTTACTCTTCCTTTGGGTT
GGTTGTTGCTCAGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCAC
TGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTA
ATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCA
ATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGTGTAACAGGTTGGCATTCTACATTGACCTAATGGAAAGGTTGAATCCCAATTCAGATCGAAAGAACTGGAGTGCATTACTGTCTGGAAAATGGTGTTTATTGTATCATAGAAGGAGGCAAATAGGCCTA
ACAATCTGTGAGgcttctccgagagttcttattggaaatgtttatcttagttttctgtcagccaaagacaacaaaagtagtttttctatggtagctaatattgatttcactgtcatggttggtccccattggtcccatgataaaagGGGCAAAGAAGGAAATTTTCACATCAGTTCAAATCTTGAAATGATAAATGGAGA
GAGAATTTATCAAATGGAATCCTAGGTTATAGACCAAGGAGCTATTCAGGACAATAACAGTGAGAGTAATGAGAGCATCCTCACAACCTCTCAAGTGCTAGTGACATGGAAAAGTTATAGAAATGGACAATGGAGAAAAGTAAGCCAGTTCCTACCAAAAGAAACATCTTCAAGTCTTCCTGTGGTGAAGTTGGTCTCAT
TAGATGTAGAGGTGACAATGAATCGTGACTATGCTACCAAAGGTGCTTCCTTACCAAGTAAGGTTCAGCTTGAAGTTCGCCTGCAGGTTCCCCAGGAAATGTTTGACATATCAAAACTGGTCCATGGGACATATGTTGATTCAAGGTTGTTAATCTTGTGAGTTGTCACAGGTTCATCTCTTCTCTTCACTTGCATATTT
GGAAGTTGACTACTTCAAATGTACCCTGCAGTCATTGCTAGGAAGACTGCTCAAAGTTGCATCTCTTTGCTCATTCTGATATTGGTCAAGCATTCTTTCATTTTATGTGTTGGGGTGTACATTTCAAATTTGTCATTCTTTAAGAAGTATGAATGTTGTATATAAATGCCTTGTTTTTCACTCCATTGAAAATTAAAATT
GGTGTTTATGTCATCTGGTGTAAGTTATGCTGTATGAGGCCGGTGATGGTTAGATTGTCTCAGTGATCTTCACCTTATCAGGGTGGTTCTTATATGTATATTAAGGTTTATTATTAAA
Intron 4 GTACAGCGGC ... TGTTGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 8 | 9 | 23 |
| A2 | 58.06 | 13 | 16 | 20 |
| A3 | 64.1 | 7 | 11 | 14 |
| A4 | 79.31 | 3 | 10 | 13 |
| A5 | 74.19 | 4 | 12 | 11 |
| A6 | 52.14 | 28 | 29 | 32 |
| A7 | 63.51 | 27 | 36 | 58 |
| A8 | 63.38 | 13 | 16 | 29 |
| A9 | 66.2 | 24 | 42 | 52 |
| A10 | 68.29 | 13 | 20 | 36 |
>TRINITY_DN42972_c0_g1_i1 from sample A7 / Example spliced isoformGGAGAATTATCGTGCTAGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTG
CGGAAGTTGTGGGCCAATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCT
ACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCACTGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTA
GAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTAATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGAT
CAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCAATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGTGTAACAGGTTGGCATTCTACATTGACCTAATGGAAAGGTTGAATCCCAATTCAGAT
CGAAAGAACTGGAGTGCATTACTGTCTGGAAAATGGTGTTTATTGTATCATAGAAGGAGGCAAATAGGCCTAACAATCTGTGAGGTGAACTGAACAACTTACATGTCCCTTGTTTTCTTTTAGTGTCACGTGCACCTCATGACTCTGTTAACTTACATGGCAGTTGCATTCTTCTTGTAGGCTTCTCCGAGAGTTCTTAT
TGGAAATGTTTATCTTAGTTTTCTGTCAGCCAAAGACAACAAAAGTAGTTTTTCTATGGTAGCTAATATTGATTTCACTGTCATGGTTGGTCCCCATTGGTCCCATGATAAAAGGGGCAAAGAAGGAAATTTTCACATCAGTTCAAATCTTGAAATGATAAATGGAGAGAGAATTTATCAAATGGAATCCTAGGTTATAG
ACCAAGGAGCTATTCAGGACAATAACAGTGAGAGTAATGAGAGCATCCTCACAACCTCTCAAGTGCTAGTGACATGGAAAAGTTATAGAAATGGACAATGGAGAAAAGTAAGCCAGTTCCTACCAAAAGAAACATCTTCAAGTCTTCCTGTGGTGAAGTTGGTCTCATTAGATGTAGAGGTGACAATGAATCGTGACTAT
GCTACCAAAGGTGCTTCCTTACCAAGTAAGGTTCAGCTTGAAGTTCGCCTGCAGGTTCCCCAGGAAATGTTTGACATATCAAAACTGGTCCATGGGACATATGTTGATTCAAGGTTGTTAATCTTGTGAGTTGTCACAGGTTCATCTCTTCTCTTCACTTGCATATTTGGAAGTTGACTACTTCAAATGTACCCTGCAGT
CATTGCTAGGAAGACTGCTCAAAGTTGCATCTCTTTGCTCATTCTGATATTGGTCAAGCATTCTTTCATTTTATGTGTTGGGGTGTACATTTCAAATTTGTCATTCTTTAAGAAGTATGAATGTTGTATATAAATGCCTTGTTTTT
>TRINITY_DN42972_c0_g1_i8 from sample A7 / Example unspliced isoform:GGAGAATTATCGTGCTAGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTG
CGGAAGTTGTGGGCCAATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGgtacagcggctttccagcaaagcaaaaaaaatgatacccctagtaattaagcaaggatatggggatgaagattctctttcttagcagttggcttagtcctttgaaaaggtgctta
ctcttcctttgggttggttgttgctcagTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCC
AGGAGGATGGTTCACTGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTC
CATCTACCCCATCTAATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAG
CAGGCGTGATACCCAATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGGTCGATAAACTTGCATTGGATTCTTTACATGAAAATGTGTATGCATACTTGGAAAACTTGAAGCCCTGGCTTATGGTGTGTTTGATATCCTAGACTATATGTCTTTTCCTACTT
GATCTGAAGCATTTATGTATTTAGTAATTTACATTGAGGTGCTTATACAAGCTTGCGAGCAAATTTGGTTCTCTTTGGATTTGTTATATAATATTAGCA
Intron 5 GTGAACTGAA ... ATGATAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 6 | 8 | 7 |
| A2 | 80 | 1 | 2 | 6 |
| A3 | 46.67 | 4 | 4 | 3 |
| A4 | 62.96 | 5 | 10 | 7 |
| A5 | 40 | 3 | 2 | 2 |
| A6 | 60 | 13 | 12 | 27 |
| A7 | 56.04 | 20 | 15 | 36 |
| A8 | 53.42 | 17 | 6 | 33 |
| A9 | 48.45 | 15 | 8.2 | 20 |
| A10 | 55.56 | 4 | 5 | 5 |
>TRINITY_DN41543_c0_g1_i14 from sample A6 / Example spliced isoformGGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGGTACAGCGGCTTTCCAGCAAAGCAAAAAAAAATGATACCCCTAGTAATTAAGCAAGGATATGGGGATGAAGATTCTCTTTCTTAGCAGTTGGCTTAGTCCTTTGAAAAGGTGCTTACTCTTCCTTTGGGTT
GGTTGTTGCTCAGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCAC
TGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTA
ATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCA
ATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGTGTAACAGGTTGGCATTCTACATTGACCTAATGGAAAGGTTGAATCCCAATTCAGATCGAAAGAACTGGAGTGCATTACTGTCTGGAAAATGGTGTTTATTGTATCATAGAAGGAGGCAAATAGGCCTA
ACAATCTGTGAGGGGCAAAGAAGGAAATTTTCACATCAGTTCAAATCTTGAAATGATAAATGGAGAGAGAATTTATCAAATGGAATCCTAGGTTATAGACCAAGGAGCTATTCAGGACAATAACAGTGAGAGTAATGAGAGCATCCTCACAACCTCTCAAGTGCTAGTGACATGGAAAAGTTATAGAAATGGACAATGGA
GAAAAGTAAGCCAGTTCCTACCAAAAGAAACATCTTCAAGTCTTCCTGTGGTGAAGTTGGTCTCATTAGATGTAGAGGTGACAATGAATCGTGACTATGCTACCAAAGGTGCTTCCTTACCAAGTAAGGTTCAGCTTGAAGTTCGCCTGCAGGTTCCCCAGGAAATGTTTGACATATCAAAACTGGTCCATGGGACATAT
GTTGATTCAAGGTTGTTAATCTTGTGAGTTGTCACAGGTTCATCTCTTCTCTTCACTTGCATATTTGGAAGTTGACTACTTCAAATGTACCCTGCAGTCATTGCTAGGAAGACTGCTCAAAGTTGCATCTCTTTGCTCATTCTGATATTGGTCAAGCATTCTTTCATTTTATGTGTTGGGGTGTACATTTCAAATTTGTC
ATTCTTTAAGAAGTATGAATGTTGTATATAAATGCCTTGTTTTTCACTCCATTGAAAATTAAAATTGGTGTTTATGTCATCTGGTGTAAGTTATGCTGTATGAGGCCGGTGATGGTTAGATTGTCTCAGTGATCTTCACCTTATCAGGGTGGTTCTTATATGTATATTAAGGTTTATTATTAAA
>TRINITY_DN41543_c0_g1_i2 from sample A6 / Example unspliced isoform:GAGGGAATCAATTTTCCAGGAGGTGTAACAGGTTGGCATTCTACATTGACCTAATGGAAAGGTTGAATCCCAATTCAGATCGAAAGAACTGGAGTGCATTACTGTCTGGAAAATGGTGTTTATTGTATCATAGAAGGAGGCAAATAGGCCTAACAATCTGTGAGgtgaactgaacaacttacatgtcccttgttttcttt
tagtgtcacgtgcacctcatgactctgttaacttacatggcagttgcattcttcttgtaggcttctccgagagttcttattggaaatgtttatcttagttttctgtcagccaaagacaacaaaagtagtttttctatggtagctaatattgatttcactgtcatggttggtccccattggtcccatgataaaagGGGCAA
AGAAGGAAATTTTCACATCAGTTCAAATCTTGAAATGATAAATGGAGAGAGAATTTATCAAATGGAATCCTAGGTTATAGACCAAGGAGCTATTCAGGACAATAACAGTGAGAGTAATGAGAGCATCCTCACAACCTCTCAAGTGCTAGTGACATGGAAAAGTTATAGAAATGGACAATGGAGAAAAGTAAGCCAGTTCC
TACCAAAAGAAACATCTTCAAGTCTTCCTGTGGTGAAGTTGGTCTCATTAGATGTAGAGGTGACAATGAATCGTGACTATGCTACCAAAGGTGCTTCCTTACCAAGTAAGGTTCAGCTTGAAGTTCGCCTGCAGGTTCCCCAGGAAATGTTTGACATATCAAAACTGGTCCATGGGACATATGTTGATTCAAGGTTGTTA
ATCTTGTGAGTTGTCACAGGTTCATCTCTTCTCTTCACTTGCATATTTGGAAGTTGACTACTTCAAATGTACCCTGCAGTCATTGCTAGGAAGACTGCTCAAAGTTGCATCTCTTTGCTCATTCTGATATTGGTCAAGCATTCTTTCATTTTATGTGTTGGGGTGTACATTTCAAATTTGTCATTCTTTAAGAAGTATGA
ATGTTGTATATAAATGCCTTGTTTTTCACTCCATTGAAAATTAAAATTGGTGTTTATGTCATCTGGTGTAAGTTATGCTGTATGAGGCCGGTGATGGTTAGATTGTCTCAGTGATCTTCACCTTATCAGGGTGGTTCTTATATGTATATTAAGGTTTATTATTAAA
Intron 6 GTACAGCGGC ... TGTTGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 8 | 9 | 23 |
| A2 | 58.06 | 13 | 16 | 20 |
| A3 | 64.1 | 7 | 11 | 14 |
| A4 | 79.31 | 3 | 10 | 13 |
| A5 | 74.19 | 4 | 12 | 11 |
| A6 | 52.14 | 28 | 29 | 32 |
| A7 | 63.51 | 27 | 36 | 58 |
| A8 | 63.38 | 13 | 16 | 29 |
| A9 | 66.2 | 24 | 42 | 52 |
| A10 | 68.29 | 13 | 20 | 36 |
>TRINITY_DN41543_c0_g1_i13 from sample A6 / Example spliced isoformGGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATG
CGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCACTGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACAC
TTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTAATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATC
TAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCAATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGGTTGATAAACTTGCACTGGATTCTTTATATGAAAATGTGGAGGCATACTTGGAAAACTTGGAGCCGTGGCTTA
TGCTACTTTTGGACTTGATGACGTTTCGAGAGCAAGCATTGCGACTTATTCTAGATCTGAGTAGTACTGTTATCACACTGCTGCCCCATCAGAATTCACTGATCCTCCATGCATTCATGGACCTTTTCTGTGCATTTGTACGTGTAAATCTATTGTCTGACAAGGTACCGAGAAAAATGATTGTGCAGATCTACAACCTT
TTGCATACTATGTTAAGAAGTGAAAGAGATTATGAATTCTATCATCGACTGGTTCAGTTCATTGATTCTTATGATCCACCACTGAAAGGGCTGCATGAGGATCTAAATTTTGTGAGCCCTCGCATTGGAGAGGTTTTGGAGGCAGTGGGTCCTATTATTTTCCTTGCTGCTGATACTCAGAAATTGAGAAATGAGGGTTT
TCTCAGCCCCTTTCATCCTCGATATCCAGACATACTCACCAACTCAGCTCATCCAATGAGAGCTCAGGACTTGGCCAATGTAAATGCACACCGTGATTGGGTACTTCTGGGTTATCTAGTGTGTCCTAGTGAGCTACTACGGATCACTGGTATTGACATTGCAATGGCAGTATTGAAAGAAAATCTGGTGCTTTCGCTAT
ATAGGGATGAGTGTATACTTTTGCATGAAGAATACCAACTATATGTCTTGCCCAAAATACAAGAATCCAAAAAAATGGCTAAAGCTGGACGTGCAAAGCAAAAGGAAGCAGATGCTGAGTATAACATTGCAAAACAGGTGGAGAAAATGATATGTGATGTGCACGATCAAGCAATTGGTTCTGCCGAAGGAATACATAGA
GAACGCAGAATTCTTCTCAAACAAGAGATTGGAAGAATGGTGCTCTTTTTCTCTGACCAACCTAGTTTGCTTGCACCTAATATTCAGATGGTGTTTTCAGCTTTAGCCTTGGCTCGCTCTGAAGTTATGTGGTACTTCCGACATATTGGTGTTGTATCAGTCAAATCCAAAGCGACGCGTGTTGTGCCTGTAGAGATTGA
TTCAAGTGATCCAACTATCGGTTTTCTATTGGATGGAATGGACAAGCTTTGTTCCTTGGTTCGAAAATATGTATCAGCTATCAGGGGATATGCCTTGGCATATTTGGCATCTGCAGCAGAGAGAATCCGCTTCTTGCTTGGGAGTGCAGGCATGGTAGCTCTGGACATTGATGCAGAGTTGCGTAACCTTTTCCAGCAAG
TTATAGGCTGCCTTGAGAAATCGCCAAAGCCCCAGGGTGAAAATGTTTCTACAGCAACAGCCGATCTATCTGATTTTCGAAAGCACTGGCTCTCTGTATTGATGGTAGTCACATCATCTAGATCATCAATAAATATTAGACACTTGGAGAAGGCCACAATGTCTACTGGCAAGGAAGGATTGGTGTCAGAAGGAAATGCA
GCTTATGTTTGGTCCAGGAGTGTTGATGAACTCGAAGATCAGTTGTCTACACATGCTTGTGTAAAACAACTGTATTACTATCGCCAGCATTTGACAGTTGTTTTCCGTAATACTATGTTTGGCCCAGAGGGGCGGCCACAACACTGCTGTGCATGGCTTGGTGTTGCCAGTAGTTTTCCAGATAATGCCACTGTCAGTGT
GCCCGAGGAGCTTATAAAAATAGGCCGGGATGCAGTATCATATGTGGAGTCTCTTATAGAATCCATCATGGGAGGATTGGAAGGGCTTATCAATATTCTAGATTCTGAAGGTGGTTTTGGTTCCTTAGAATACAAGCTCCTACCAGAGCAAGCAGCTATCCGCATGAATCATGCAGCTAAAGTTGCCATGCCTTCTACCA
AGTCAATGAAGAGCAGTTCAGATTTGCCTTTGCCCGGAAATGAGAGTGAACCTGCAAATAGAGATACCATTAAAATGTTGGAGGCTGCAGTGCAAAGGTTGACAAGTCTCTGCTCAGTGTTGAATGAAATGGAACCAATATGTATTCTAAACCATGTCTTTGTTCTAAGAGAGTACCTGAGGGACTGTGTACTAAGCAAC
TTCAGGAGACGATTGATTACAATCTTAAAGATTGATAGAGACCTTCAGCGGCCTTCTGTTCTGGAGTCATTAGTTCACCGTCATATGAATATAGTTCATCTGGTTGAACAGCATGTAAGTATGGATTTAACTCAGGGTATGCGGGAGGTTTTGTTGAGTGAGGCATTTTCTGGACCCATGCATGGTTTGCATACTTTTGA
GAAACATGTACAGAACACAGGCACAGCGATTTCAATTATCTGTGATTGGTACCTGGAGAATGTTGTTAAAGATCTAAATGGTGCTGGTATTTTATTTACACCTATAGATAAGTGCTTCAAGAGTGCAAGACCAGTTGGGGGATACTTTGCTGAAGCTGTAACAGACCTTTCTGAACTGAAGGCTTTTGTTCGGTTGTTCG
GACCATATGGGGTTGATAAACTTGATGGTATCATCCGAGAGCATCTTACTACTCTTTTGAACTGCATTGATACTACATTGCGTTCTAATAAGGAATCTCTTGAGGCCCTCTCTACACACATGCACAATTGGACAGAAAGGGATTATTATTTGAAACAAGTTCGTGAGTTGGAGGCTCTAATTAACTTTTCAATTCAGGCA
GGTCAAGCATTGTGCTTTAGTTCTCTGTTAGCCGAAGCTGCTGGACAAGTCCTTGATGCGAATACTCCTCTTCTATTTTCACTATTGTCAGACTTCACAAAACACTTACCAGCTTCTCTGCCCGAGAGAGAAGATATTCGGAAGTTGAAAACATTAACCAACACTTTGGGTGTGACTGCAGAACATGATACTGCATTAGT
CAACTCCATTCTCCTGGACATGGGCGGTGTTGGTGATGTTACATGGGGCTTGTTGCCATATCTCTATGCAACTTTTATGACATCCAACATCTGGAGTACTTCTGCATTTAATGTCAGTACTGGAGGCTTTAACAATAATGTCCATTGTTTGGCAAGGTGCATAAATGCAGTTATTGCTGCAAGTGAATTTGTTAGGGCAG
AAAGGAAAGAGCTTGAGCGGCAGATTCTTTCTCAGCAACAATCAAATAGGAATGTTACTGAACTTAAGGAGCTGGAAGCAGAATTACAGAACCTGGAGGGAATTACATCTGTTGAGGCGAACATAAAGGCATCTATGAAAATCTTCATTAAATGTGCTTCCACGATTATACTTCAATCCTGGAGTGACAGTAACAGGTCC
CCCTTAGTGGCAAAGTTAATATTCCTGGATCAGTTATGCGAGCTCTCAAATTATCTTCCACGAAGCACACTTGAAGTGTATGTACCCTATGCAATCTTAAGGTCAATTTACCAACAGTATTATGAAAATTCTGTACCCACATTAGTACTGATTAGTCCATCAAGGAGACATTCTTTGGGTATATCGCTAAGCCACGCACC
TTCAAGGAATGGACAATTTTATAGTGATTATACTATGGAGTCCAGCGAGGGAGCAACATCAAGCACACTTAAGTTTTCAGCCCAGAGAAAGTCTCCACATTTGGATTTGGAATCCTCCAGCGATGCAGGCACCAAACATAGTGGAGGTGGTGTACGCCTATCAGGGCCACTTGACTATACTGGAATGAGGAAGGTTTCCT
TCCTAGATACTCCAAGTTCCGATGGCACATCTGGGCCTAGTCCTCTTCGCCGGTTTGTTATGTCCAGGTCCGGACCTGTAACATACAAGTAGGACAATAATAAATATCAAATCTGACTGTAAAATATAATTTCTGAGATGAAGTTTTATCTTAATTAACAGCACTGGATTGCAACTACTTGCGCTTGATTGATGTTTTCA
AGCAAGATGTAATGCTTCCAGTGTTGGAAGTGAATTGTATCTTTTAAGGGCCTTCGATTCTTCTTACTATTTTTACAGGAAGGCAATCATAGCTCGTTCAGAAACATGCTATTCATGCTATTCTCTGATTTTTCATTAGAATGGAATTGAAAGAAATCAGGAATCTCTATACATCCGATTTAGAAAGTTCAAGACATCCG
ATTTCTGCAGAAGTCAATAAAATTTATTGTCTGGGCATTCTTGTAGGATAGAAAACCACCCCATTAAGGACCCCATATACAATTTTTTGGACTGGTCAGTTTCAAGCCCCAATTCAATTAAAAGTTTCACATGCTAATGCAGTTATCCCTTTCATAAGTTATGCGGGACCATTGGCCATATTTAGCTAACATTTGTGCA
>TRINITY_DN41543_c0_g1_i8 from sample A6 / Example unspliced isoform:GGCGGAATTTCATGAGGTCAGGTTAAAAAGTTCCCTCTGTTCCATTGAGATGGGATGGAGGGTTATGGTTCTCTCTTCCATAGCTATGATTGTCCAAGATTTCCCTTTCAGCCTCTAGTTGATATTGTTTTCTCCTCTCGGTCTCAATACAGCTCTGATTGCCATAATGGGTTTTCCACTGTTGCGGAAGTTGTGGGCCA
ATTTCAAAGATCGGAAATCAAAAGAGGAAACATCACAATAACATGCTTTAGCATCATATGGGATCTCTGgtacagcggctttccagcaaagcaaaaaaaaatgatacccctagtaattaagcaaggatatggggatgaagattctctttcttagcagttggcttagtcctttgaaaaggtgcttactcttcctttgggtt
ggttgttgctcagTGGTTCATGGTCTGCAGAGGATTCATTATCCTTGCTTAAGGGTTGGATGCCTTAGGAGAAGACTGTTTCGTCAAAAGCATAGAGGAATTTACCACCATCATATGAAGCAGTTGCTACTAGTCAAGGTGATGCGCAGCTTCCCAACCTGTGCGGCAGAGGGAATCAATTTTCCAGGAGGATGGTTCAC
TGTTTTTCTAGAATGTATCAGCCATTGGACCACAAGACAACTGAACTTTTTTATTCCATGCCGCTTATGTTTTGATTAACAAATTGCTCGACATAGCTTTCTAAATCAGGATTCATCTGATAAATCTAGAGACTGGGATAACACTTCTAGATGGTCAGAACAATCCAATCCTGAAATAGTTTCTCCATCTACCCCATCTA
ATTGGAAGCATGCAGATTCACCTACTCCTCCTAGTAACATAAATTTCCAGAAGGCTCGACATATGCAATGGGTATTTCAACTTGTTGATGTGGCTGAAGGACTGATGGCCAAGATGTACAAGCTTGATCAAAAGTTGCATTATCTAGAGCCTACTACATTTCAATTTTCAGATCCTTCTGGAAAGCAGGCGTGATACCCA
ATTGCCGAAAGTTGTGCATGAATATTGCAAAGAAGTTCTCGGAGCATCCTGGGAAGTTGCAGCTTGAAAGGGTTGATAAACTTGCACTGGATTCTTTATATGAAAATGTGGAGGCATACTTGGAAAACTTGGAGCCGTGGCTTATGCTACTTTTGGACTTGATGACGTTTCGAGAGCAAGCATTGCGACTTATTCTAGAT
CTGAGTAGTACTGTTATCACACTGCTGCCCCATCAGAATTCACTGATCCTCCATGCATTCATGGACCTTTTCTGTGCATTTGTACGTGTAAATCTATTGTCTGACAAGGTACCGAGAAAAATGATTGTGCAGATCTACAACCTTTTGCATACTATGTTAAGAAGTGAAAGAGATTATGAATTCTATCATCGACTGGTTCA
GTTCATTGATTCTTATGATCCACCACTGAAAGGGCTGCATGAGGATCTAAATTTTGTGAGCCCTCGCATTGGAGAGGTTTTGGAGGCAGTGGGTCCTATTATTTTCCTTGCTGCTGATACTCAGAAATTGAGAAATGAGGGTTTTCTCAGCCCCTTTCATCCTCGATATCCAGACATACTCACCAACTCAGCTCATCCAA
TGAGAGCTCAGGACTTGGCCAATGTAAATGCACACCGTGATTGGGTACTTCTGGGTTATCTAGTGTGTCCTAGTGAGCTACTACGGATCACTGGTATTGACATTGCAATGGCAGTATTGAAAGAAAATCTGGTGCTTTCGCTATATAGGGATGAGTGTATACTTTTGCATGAAGAATACCAACTATATGTCTTGCCCAAA
ATACAAGAATCCAAAAAAATGGCTAAAGCTGGACGTGCAAAGCAAAAGGAAGCAGATGCTGAGTATAACATTGCAAAACAGGTGGAGAAAATGATATGTGATGTGCACGATCAAGCAATTGGTTCTGCCGAAGGAATACATAGAGAACGCAGAATTCTTCTCAAACAAGAGATTGGAAGAATGGTGCTCTTTTTCTCTGA
CCAACCTAGTTTGCTTGCACCTAATATTCAGATGGTGTTTTCAGCTTTAGCCTTGGCTCGCTCTGAAGTTATGTGGTACTTCCGACATATTGGTGTTGTATCAGTCAAATCCAAAGCGACGCGTGTTGTGCCTGTAGAGATTGATTCAAGTGATCCAACTATCGGTTTTCTATTGGATGGAATGGACAAGCTTTGTTCCT
TGGTTCGAAAATATGTATCAGCTATCAGGGGATATGCCTTGGCATATTTGGCATCTGCAGCAGAGAGAATCCGCTTCTTGCTTGGGAGTGCAGGCATGGTAGCTCTGGACATTGATGCAGAGTTGCGTAACCTTTTCCAGCAAGTTATAGGCTGCCTTGAGAAATCGCCAAAGCCCCAGGGTGAAAATGTTTCTACAGCA
ACAGCCGATCTATCTGATTTTCGAAAGCACTGGCTCTCTGTATTGATGGTAGTCACATCATCTAGATCATCAATAAATATTAGACACTTGGAGAAGGCCACAATGTCTACTGGCAAGGAAGGATTGGTGTCAGAAGGAAATGCAGCTTATGTTTGGTCCAGGAGTGTTGATGAACTCGAAGATCAGTTGTCTACACATGC
TTGTGTAAAACAACTGTATTACTATCGCCAGCATTTGACAGTTGTTTTCCGTAATACTATGTTTGGCCCAGAGGGGCGGCCACAACACTGCTGTGCATGGCTTGGTGTTGCCAGTAGTTTTCCAGATAATGCCACTGTCAGTGTGCCCGAGGAGCTTATAAAAATAGGCCGGGATGCAGTATCATATGTGGAGTCTCTTA
TAGAATCCATCATGGGAGGATTGGAAGGGCTTATCAATATTCTAGATTCTGAAGGTGGTTTTGGTTCCTTAGAATACAAGCTCCTACCAGAGCAAGCAGCTATCCGCATGAATCATGCAGCTAAAGTTGCCATGCCTTCTACCAAGTCAATGAAGAGCAGTTCAGATTTGCCTTTGCCCGGAAATGAGAGTGAACCTGCA
AATAGAGATACCATTAAAATGTTGGAGGCTGCAGTGCAAAGGTTGACAAGTCTCTGCTCAGTGTTGAATGAAATGGAACCAATATGTATTCTAAACCATGTCTTTGTTCTAAGAGAGTACCTGAGGGACTGTGTACTAAGCAACTTCAGGAGACGATTGATTACAATCTTAAAGATTGATAGAGACCTTCAGCGGCCTTC
TGTTCTGGAGTCATTAGTTCACCGTCATATGAATATAGTTCATCTGGTTGAACAGCATGTAAGTATGGATTTAACTCAGGGTATGCGGGAGGTTTTGTTGAGTGAGGCATTTTCTGGACCCATGCATGGTTTGCATACTTTTGAGAAACATGTACAGAACACAGGCACAGCGATTTCAATTATCTGTGATTGGTACCTGG
AGAATGTTGTTAAAGATCTAAATGGTGCTGGTATTTTATTTACACCTATAGATAAGTGCTTCAAGAGTGCAAGACCAGTTGGGGGATACTTTGCTGAAGCTGTAACAGACCTTTCTGAACTGAAGGCTTTTGTTCGGTTGTTCGGACCATATGGGGTTGATAAACTTGATGGTATCATCCGAGAGCATCTTACTACTCTT
TTGAACTGCATTGATACTACATTGCGTTCTAATAAGGAATCTCTTGAGGCCCTCTCTACACACATGCACAATTGGACAGAAAGGGATTATTATTTGAAACAAGTTCGTGAGTTGGAGGCTCTAATTAACTTTTCAATTCAGGCAGGTCAAGCATTGTGCTTTAGTTCTCTGTTAGCCGAAGCTGCTGGACAAGTCCTTGA
TGCGAATACTCCTCTTCTATTTTCACTATTGTCAGACTTCACAAAACACTTACCAGCTTCTCTGCCCGAGAGAGAAGATATTCGGAAGTTGAAAACATTAACCAACACTTTGGGTGTGACTGCAGAACATGATACTGCATTAGTCAACTCCATTCTCCTGGACATGGGCGGTGTTGGTGATGTTACATGGGGCTTGTTGC
CATATCTCTATGCAACTTTTATGACATCCAACATCTGGAGTACTTCTGCATTTAATGTCAGTACTGGAGGCTTTAACAATAATGTCCATTGTTTGGCAAGGTGCATAAATGCAGTTATTGCTGCAAGTGAATTTGTTAGGGCAGAAAGGAAAGAGCTTGAGCGGCAGATTCTTTCTCAGCAACAATCAAATAGGAATGTT
ACTGAACTTAAGGAGCTGGAAGCAGAATTACAGAACCTGGAGGGAATTACATCTGTTGAGGCGAACATAAAGGCATCTATGAAAATCTTCATTAAATGTGCTTCCACGATTATACTTCAATCCTGGAGTGACAGTAACAGGTCCCCCTTAGTGGCAAAGTTAATATTCCTGGATCAGTTATGCGAGCTCTCAAATTATCT
TCCACGAAGCACACTTGAAGTGTATGTACCCTATGCAATCTTAAGGTCAATTTACCAACAGTATTATGAAAATTCTGTACCCACATTAGTACTGATTAGTCCATCAAGGAGACATTCTTTGGGTATATCGCTAAGCCACGCACCTTCAAGGAATGGACAATTTTATAGTGATTATACTATGGAGTCCAGCGAGGGAGCAA
CATCAAGCACACTTAAGTTTTCAGCCCAGAGAAAGTCTCCACATTTGGATTTGGAATCCTCCAGCGATGCAGGCACCAAACATAGTGGAGGTGGTGTACGCCTATCAGGGCCACTTGACTATACTGGAATGAGGAAGGTTTCCTTCCTAGATACTCCAAGTTCCGATGGCACATCTGGGCCTAGTCCTCTTCGCCGGTTT
GTTATGTCCAGGTCCGGACCTGTAACATACAAGTAGGACAATAATAAATATCAAATCTGACTGTAAAATATAATTTCTGAGATGAAGTTTTATCTTAATTAACAGCACTGGATTGCAACTACTTGCGCTTGATTGATGTTTTCAAGCAAGATGTAATGCTTCCAGTGTTGGAAGTGAATTGTATCTTTTAAGGGCCTTCG
ATTCTTCTTACTATTTTTACAGGAAGGCAATCATAGCTCGTTCAGAAACATGCTATTCATGCTATTCTCTGATTTTTCATTAGAATGGAATTGAAAGAAATCAGGAATCTCTATACATCCGATTTAGAAAGTTCAAGACATCCGATTTCTGCAGAAGTCAATAAAATTTATTGTCTGGGCATTCTTGTAGGATAGAAAAC
CACCCCATTAAGGACCCCATATACAATTTTTTGGACTGGTCAGTTTCAAGCCCCAATTCAATTAAAAGTTTCACATGCTAATGCAGTTATCCCTTTCATAAGTTATGCGGGACCATTGGCCATATTTAGCTAACATTTGTGCA