NA ----> NA

Intron 1 GTCATTGTCT ... GCTGTCCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.47	32	51	66
A2	83.11	13.5	66	63
A3	80.46	22.5	89	91
A4	69.5	22.5	51	48
A5	73.47	13	37	34
A6	72.39	120	292	312
A7	72.5	177	442	452
A8	74.42	164	456	461
A9	75.78	138	421	418
A10	77.83	100.5	343	339

>TRINITY_DN102889_c0_g2_i1 from sample A4 / Example spliced isoform

CCCCTCTTGCTTTAAACGCCGATCCTCGTTGCCGCGCGGCTTCTCTAAACCCTGATCATCGTTGCTCCGCGGCTTCGTTAAACCTTAATACCACTGTCCACCTAAAATTCTACATTCCACGGGGTTGCAGGTATCTATTAAACATCAGGAATGGGACTGTCGGAGACTTCTTTCGCTCCAAAACATTGAAAAACAACCAA
TTACATTGGGATTTTCCATCATTTTTTCACTCAAAATGTTCGCTCACAGCAGCTCAGTTGCGCGCAGAGCGCAGCAAAGCCTGTCGTTTCTTCGGCGCCTGAATACCTGCACAGGCCATGGACAAATCGGCTCATTGTATTCACAAAATCTGCAGAAATCTCCAATGTTTTCGTCAGAAAACCCTTGGGATTTCAGCAGG
AATAACGTCTTTCCCAGTACACTTGTTCCTTTGCATTTACCGACGGGATTTAGGTACTTCTCCGCTGATCCTCAAAACTCCTCTGAATCTCATGACGAGGACTTTTCAGAGTTCGATTCGGAGGAAATAAACGAAGGCACGGGTTTCAAACACGATTCCGACGTCGAAATTTCATCTCGGACAGGGTCTGAAAGATTGCG
AACCAAGAGCATTGCTTTACTCTTCAAAGAAGCTATTGGCCTCGAGAAAAGGTCGGAGAGTAAAAGACTGGAGTTGGAGCTTAAAGGCCTGAGGGATCTCCCTCCTGAAGAACAGGTTAAAAAATTGAAGAGTAAGCTCGAATTTCAGTGGGAAATGATCAATACATTGAGGGATAGTGTAGACGATTTGCACAACACGG
TAAAGGAACTTAATAGCAAGAACGCACTCCTGGAAAACGCTATAGAGCAGATAACCCAGAGTTCCCTCGAGTTCAAGAAAAACTCAATTGGAAAAAGTAATAGTAATAGTGAGGAAAGGCCTCACCCCAAGAAAAAAGTGAAATTAGAGCAAAAAATGCCGATTATGAAGAAGAAGGCCGAGGGAGGTTCGGGATCTTTG
GAGCATCCATGGCCAGAGTGGGTTCAGTTTGTCGAGCATTTGAATGAGAAAGGGTACCTGAGCAAGGAAGTAAACTTTGCAGATGGACCGGTAGATCTTCAAGGTCTCAGGACGGTGGAAATCTATGGATTTATCAAGCTTGCAGCTTTCAGTTATGTCAAGGACCATGACGAAATCTTAAATGATGAAAAGAGAGCA

>TRINITY_DN102889_c0_g2_i3 from sample A4 / Example unspliced isoform:

CCCCTCTTGCTTTAAACGCCGATCCTCGTTGCCGCGCGGCTTCTCTAAACCCTGATCATCGTTGCTCCGCGGCTTCGTTAAACCTTGATACCACTATCCACCTAAAATTCTACATTCCACGGGGTTACAGGTATCTATTAAACACCAGGAATGGGATTGCCGGAGACTTCTTTCGCTCCAAAACATTGAAAAACAACCAA
TTACATTGGGATTTTCCATCATTTTTTCACTCAAAATGTTCGCTCACAGCAGCTCAGTTGCGCGCAGAGCGCAGCAAAGCCTGTCGTTTCTTCGGCGCCTGAATACCTGCACAGGCCATGGACAAAACCGCTCATTGTATTCACAAAATCTGCAGAAATCTCCAATGTTTTCGTCAGAAAACCCTTGGGATTTCAGCAGG
AATAACGTCTTTCCCAGTGCACTTGTTCCTTTCCATTTACCGACGGGATTCAGGTACTTCTCCGCTGATCCTCAAAACTCCTCTGAATCTCATGACGAGGACTTTTCAGAGTTCGATTCGGAGGAAATAAACGAAGGCACGGGTTTCAAACACGATTCCGACGTCGAAATTTCATCTCGGACAGGGTCTGAAAGATTGCG
AACCAAGAGCATTGCTTTACTCTTCAAAGAAGCTATTGGCCTCGAGAAAAGGTCGGAGAGTAAAAGACTGGAGTTGGAGCTTAAAGGCCTGAGGGATCTCCCTCCTGAAGAACAGGTTAAAAAATTGAAGAGTAAGCTCGAATTTCAGTGGGAAATGATCAATACATTGAGGGATAGTGTAGACGATTTGCACAACACGG
TAAAGGAACTTAATAGCAAGAACGCACTCCTGGAAAACGCTATAGAGCAGATAACCCAGAGTTCCCTCGAGTTCAAGAAAAACTCAATTGGAAAAAGTAATAGTAATAGTGAGGAAAGGCCTCACCCCAAGAAAAAAGTGAAATTAGAGCAAAAAATGCCGATTATGAAGAAGAAGGCCGAGGGAGGTTCGGGATCTTTG
GAGCATCCATGGCCAGAGTGGGTTCAGTTTGTCGAGCATTTGAATGAGAAAGGGTACCTGAGCAAGGAAGTAAACTTTGCAGATGGACCGGTAGATCTTCAAGGTCTCAGGACGGTGGAAATCTATGGATTTATCAAGCTTGCAGCTTTCAGTTATGTCAAGGACCATGACGAAATCTTAAAgtcattgtctattagtga
cctgagaaaagttactctttttggctgtccaagTGATGAAAAGAGAGCTATCGCTGCTGTAAAAAGGTTACGCTCTTTCATCAGCAGCAAGTACATTGATTGCCCGCCACGTGATCTGGAGGACACCTGCAATACTCCACTTGTGAAGCTTAGATTGGATGATGTTGTGAGATTGCTCTGTGCATATGGTTTAAATGCTG
AGAAAAATGAGCTACCCATTCCAGACGATGTAAAACAATCTGTTGTTAATTTGCTGGTGGAAATTGTTGATTTCAGTGCCCGTTCTGTTAATGATGAGCAGGGCCTTTTATTGCAAAAGTAAACAGTGCAGGATTTAGAATGTTTATGTAAAGGTGTAATTGTCAACGAATTATTAAGATAAAAGATCATAGAAAATGAG
CAATAGTTGTATTAAAA