sp|Q8H996|CRJ31_CRYJA ----> Pathogenesis-related thaumatin-like protein 3.1

Intron 1 GTCAGTAATC ... TTGTGTCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	72.6	10	27	26
A2	80.77	5	25	17
A3	88.89	2	11	21
A4	89.19	2	25	8
A5	100	0	4	9
A6	62.79	16	18	36
A7	66.41	22	40	47
A8	81.82	9	24	57
A9	63.46	19	24	42
A10	84.85	5	25	31

>TRINITY_DN45319_c0_g2_i1 from sample A6 / Example spliced isoform

CTTTAATATGGTTTTGCAATGAGCTGCTCGGGCCATTGCATCTTTTAAATTGTTGCCCACAATGATCAGATATCGACCCATTTATTTCATATTAGGTATGTGCCATTGGAGCAAAGGAAGTATTTCCACAGAAATAATTGTTTGATACGTCAAACTCTTGATATTAGACGTCTGCAATTCGAGAATGGTCGGGAGCTGTG
ACATTGAAGGAGGACGAAATTTTTTCATATTGGAGTCACTTTTGTTGATCGGCGATATCTCCTGCCACGCCATTTACGTCCCGTCTGGTTGCTTTCTGCTAAATTTGCTCGGATCCGTGTATATAATTTCAAACAATTTAATGCATCTTGATATTCAAGATTGTTTATTATAATTCAATTTTCACGGTTATTCAAGATCA
T

>TRINITY_DN45319_c0_g2_i12 from sample A6 / Example unspliced isoform:

CTTTAATATGGTTTTGCAATGAGCTGCTCGGGCCATTGCATCTTTTAAATTGTTGCCCACAATGATCAGATATCGACCCATTTATTTCATATTAGGTATGTGCCATTGGAGCAAAGGAAGTATTTCCACAGAAATAATTGTTTGATACGTCAAACTCTTGATATTAGACGTCTGCAATTCGAGAATGGTCGGGAGCTGTG
ACATTGAAGGAGGACGAAATTTTTTCATATTGGAGTCACTTTTGTTGATCGGCGATATCTCCTGCCACGCCATTTACGgtcagtaatctctacccataaacttagtttagttttaacattctttcttgctctctggaggtattaatttcaattgtttaaagcatattccaaagattttattatttatgttaggtatgagt
ttgagatccacatcatgcagggttttatgatgtgaaaatttgatgtttattttttattgttttatgcatagaatttgctggacaaactactgcattgagttcgctttagctgtattaatagtaggtgcccattaaggtttttatcttatcttatatatgttttcttgttgtgtctagTCCCGTCTGGTTGCTTTCTGCTA
AATTTGCTCGGATCCGTGTATATAATTTCAAACAATTTAATGCATCTTGATATTCAAGATTGTTTATTATAATTCAATTTTCACGGTTATTCAAGATCAT

Intron 2 GTAGATCTTT ... ATGCTCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	36.96	34.4	20	15.9
A2	37.54	20	12	3.9
A3	55.85	9.4	11	4.8
A4	38.88	14.5	9	5.4
A5	62.94	11.4	19	8.9
A6	59.59	86.3	126	36.9
A7	49.79	159.1	157	60
A8	57.99	128	175	75
A9	55.39	90.2	110	39.6
A10	48.69	87.8	83	24.8

>TRINITY_DN100458_c0_g2_i1 from sample A3 / Example spliced isoform

ATTGCTTCCGGTTTGTGTTTTTCGTTTAACTGTATTTGTGATCCTCGCAGGAGCAGGAGGTGCGACCTTCGAGATCGAGAACAATTGCCCATTTACGGTTCGGCCGCAGGAGCAGGAGGTGGGACCTTCCAAATCGAGAACAATTGCCCATTTACGGTTTGGGCAGCCGGATCACCTGGCGGTGGCAAACAGCTTCAGAA
AGGGCAGTCATGGACTCTTCAAGTACACGCGGATACAGAACGGGGCACGATTTGGGGGCACACGTGATGTTCCTTCGATGGCAGCTCGACAACTGTGCAGTCGTATGGGCTCAGCTGCGAGGACTGGTGTTGGGCCATTTGGGTTGCTTGTTTTGGCTTCAAAGGACTTGAGTGAACGCACTGCTGTGTTTTTTCAAATC
GTACGATATCGAAACGAATTGAATCTATTAATGTGCAGTGACCAGAGCTGATAGTCTTTCCAGAACGGCGTTGATAAGGCAACATACGGAACTTTCGTGAATCATTTGTGTTCTTTCAAGGAAAAGAAATTTTCACTGAGAGTCCTTGT

>TRINITY_DN100458_c0_g2_i2 from sample A3 / Example unspliced isoform:

ATTGCTTCCGGTTTGTGTTTTTCGTTTAACTGTATTTGTGATCCTCGCAGGAGCAGGAGGTGCGACCTTCGAGATCGAGAACAATTGCCCATTTACGGTTCGGCCGCAGGAGCAGGAGGTGGGACCTTCCAAATCGAGAACAATTGCCCATTTACGGTTTGGGCAGCCGGATCACCTGGCGGTGGCAAACAGCTTCAGAA
AGGGCAGTCATGGACTCTTCAAGTACACGCGGATACAGAACGGGGCACGATTTGGGGGCACACGTGATGTTCCTTCGATGGCAGCTCGACAACTGTGCAGTCGTATGGGCTCAGCTGCGAGGACTGGTGTTGGGCCATTTGGGTTGCTTGTTTTGGCTTCAAAGGACTTGAGTGAACGCACTGCTGTGTTTTTTCAAATC
GTACGATATCGAAACGAATTGAATCTATTAATGTGCAGTGACCAGAGCTGgtagatctttataaacattgtaacttaatgatcttaataaatcaatccagaaaagaattagcacgttaatctctgtcaaattgtgtgaatgctcgcagATAGTCTTTCCAGAACGGCGTTGATAAGGCAACATACGGAACTTTCGTGAAT
CATTTGTGTTCTTTCAAGGAAAAGAAATTTTCACTGAGAGTCCTTGT

Intron 3 GTACGATATC ... ATGCTCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	40.47	73.5	50	16.8
A2	51.67	29	31	4.3
A3	30.81	31.5	14	4.9
A4	43.33	34	26	5.8
A5	54.41	18.5	22	9.1
A6	52.76	178.2	199	38.5
A7	50.4	256.8	261	63.4
A8	49.44	255.6	250	79.5
A9	50.24	181.4	183	41
A10	53.3	134.1	153	26.1

>TRINITY_DN100162_c0_g1_i3 from sample A5 / Example spliced isoform

GATTGCTTCCGGTTTGTGTTTTTCGTTTAACTGTATTTGTGATCCTCGCAGGAGCAGGAGGTGCGACCTTCGAGATCGAGAACAATTGCCCATTTACGGTTCGGCCGCAGGAGCAGGAGGTGGGACCTTCCAAATCGAGAACAATTGCCCATTTACGGTTTGGGCAGCCGGATCACCTGGCGGTGGCAAACAGCTTCAGA
AAGGGCAGTCATGGACTCTTCAAGTACACGCGGATACAGAACGGGGCACGATTTGGGGGCACACGTGATGTTCCTTCGATGGCAGCTCGACAACTGTGCAGTCGTATGGGCTCAGCTGCGAGGACTGGTGTTGGGCCATTTGGGTTGCTTGTTTTGGCTTCAAAGGACTTGAGTGAACGCACTGCTGTGTTTTTTCAAAT
CATAGTCTTTCCAGAACGGCGTTGATAAGGCAACATACGGAACTTTCGTGAATCATTTGTGTTCTTTCAAGGAAAAGAAATTTTCACTGAGAGTCCTTGTTGATCATTCAATCCTGGAAAGCTTTGGTGAAGGGTGAAAGGCGTGCATACCGGCTAGAGCTTAGTTCGTTTGAAAATCTAATGTGTTGTTTGTGAGTGCA
GGGTTTGAACAAGTGAGGAACGGGTTTGGTAGAGATAGCTTATTCGTGTAACTCCAAAACCCCAACCTGTCCAAATGCATCCAAACACGTGTTCTGGGATGCAGTCCATCCAACAAGCCTTGTTTACTTTAGCATTGCACAAAGAATCCTTGTTTACTTCTCATGCGATAACCTACCTCCACTCCTTTATACTTTGCTTA
TGGTAGGCAGAAGGGCAATCTCTGTAGAGATTTGCTCCTCATATAAGATGTTGCTGTGAAACAATGGCCGACCTCTTGGAAGGTTCGACCCTTTTTCTTTTTTTAAATATTGTATACAGAAATGGGAAATCTCTGTGACCGATTTAACCTATTTAATTGTTAAAACATTGCTTACATCCTTCAATTAATGATTATGAAAC
TTGCTGGCGCTAATAGCTCGAGTAAGACATTTGACTCTTCATAAATTCAACCTCTGTAATCGAAATTTATTTGACTAGATATTATGGAAAAGATTGTGTATCTTGAGATTCAGTAATGGAAATAAAATTTAAAGACTTCCGTCCATTTACTTATGAGGGG

>TRINITY_DN100162_c0_g1_i2 from sample A5 / Example unspliced isoform:

GATTGCTTCCGGTTTGTGTTTTTCGTTTAACTGTATTTGTGATCCTCGCAGGAGCAGGAGGTGCGACCTTCGAGATCGAGAACAATTGCCCATTTACGGTTCGGCCGCAGGAGCAGGAGGTGGGACCTTCCAAATCGAGAACAATTGCCCATTTACGGTTTGGGCAGCCGGATCACCTGGCGGTGGCAAACAGCTTCAGA
AAGGGCAGTCATGGACTCTTCAAGTACACGCGGATACAGAACGGGGCACGATTTGGGGGCACACGTGATGTTCCTTCGATGGCAGCTCGACAACTGTGCAGTCGTATGGGCTCAGCTGCGAGGACTGGTGTTGGGCCATTTGGGTTGCTTGTTTTGGCTTCAAAGGACTTGAGTGAACGCACTGCTGTGTTTTTTCAAAT
CgtacgatatcgaaacgaattgaatctattaatgtgcagtgaccagagctggtagatctttataaacattgtaacttaatgatcttaataaatcaatccagaaaagaattagcacgttaatctctgtcaaattgtgtgaatgctcgcagATAGTCTTTCCAGAACGGCGTTGATAAGGCAACATACGGAACTTTCGTGAA
TCATTTGTGTTCTTTCAAGGAAAAGAAATTTTCACTGAGAGTCCTTGTAAGCTGTTTTACATGAAAACTTTTAAAATCGACATTTTAAAATTTCTTGAGAAACTAAATTAGCTCTTCAAATTTTCCTTCTTGAATTTATTGTTGTAGCATATATTGGTTATTGGTTTTTTATTTTACTTGTTAATGAAATGACAGGTTGA
TCATTCAATCCTGGAAAGCTTTGGTGAAGGGTGAAAGGCGTGCATACCGGCTAGAGCTTAGTTCGTTTGAAAATCTAATGTGTTGTTTGTGAGTGCAGGGTTTGAACAAGTGAGGAACGGGTTTGGTAGAGATAGCTTATTCGTGTAACTCCAAAACCCCAACCTGTCCAAATGCATCCAAACACGTGTTCTGGGATGCA
GTCCATCCAACAAGCCTTGTTTACTTTAGCATTGCACAAAGAATCCTTGTTTACTTCTCATGCGATAACCTACCTCCACTCCTTTATACTTTGCTTATGGTAGGCAGAAGGGCAATCTCTGTAGAGATTTGCTCCTCATATAAGATGTTGCTGTGAAACAATGGCCGACCTCTTGGAAGGTTCGACCCTTTTTCTTTTTT
TAAATATTGTATACAGAAATGGGAAATCTCTGTGACCGATTTAACCTATTTAATTGTTAAAACATTGCTTACATCCTTCAATTAATGATTATGAAACTTGCTGGCGCTAATAGCTCGAGTAAGACATTTGACTCTTCATAAATTCAACCTCTGTAATCGAAATTTATTTGACTAGATATTATGGAAAAGATTGTGTATCT
TGAGATTCAGTAATGGAAATAAAATTTAAAGACTTCCGTCCATTTACTTATGAGGGG

Intron 4 GTAAGCTGTT ... GAAATGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	29.66	69.5	28.7	30
A2	21.31	46	7.9	17
A3	19.42	51	6.6	18
A4	24.21	44.8	16.6	12
A5	17.15	24.8	5.3	5
A6	30.06	171.8	54.9	93
A7	28.6	266.2	91.5	122
A8	30.15	248.1	99.4	115
A9	19.97	210.6	41.3	64
A10	30.72	104.9	41.3	52

>TRINITY_DN134584_c2_g1_i2 from sample A1 / Example spliced isoform

GATTGCTTCCGGTTTGTGTTTTTCGTTTAACTGTATTTGTGATCCTCGCAGGAGCAGGAGGTGCGACCTTCGAGATCGAGAACAATTGCCCATTTACGGTTCGGCCGCAGGAGCAGGAGGTGGGACCTTCCAAATCGAGAACAATTGCCCATTTACGGTTTGGGCAGCCGGATCACCTGGCGGTGGCAAACAGCTTCAGA
AAGGGCAGTCATGGACTCTTCAAGTACACGCGGATACAGAACGGGGCACGATTTGGGGGCACACGTGATGTTCCTTCGATGGCAGCTCGACAACTGTGCAGTCGTATGGGCTCAGCTGCGAGGACTGGTGTTGGGCCATTTGGGTTGCTTGTTTTGGCTTCAAAGGACTTGAGTGAACGCACTGCTGTGTTTTTTCAAAT
CGTACGATATCGAAACGAATTGAATCTATTAATGTGCAGTGACCAGAGCTGATAGTCTTTCCAGAACGGCGTTGATAAGGCAACATACGGAACTTTCGTGAATCATTTGTGTTCTTTCAAGGAAAAGAAATTTTCACTGAGAGTCCTTGTTGATCATTCAATCCTGGAAAGCTTTGGTGAAGGGTGAAAGGCGTGCATAC
CGGCTAGAGCTTAGTTCGTTTGAAAATCTAATGTGTTGTTTGTGAGTGCAGGGTTTGAACAAGTGAGGAACGGGTTTGGTAGAGATAGCTTATTCGTGTAACTCCAAAACCCCAACCTGTCCAAATGCATCCAAACACGTGTTCTGGGATGCAGTCCATCCAACAAGCCTTGTTTACTTTAGCATTGCACAAAGAATCCT
TGTTTACTTCTCATGCGATAACCTACCTCCACTCCTTTATACTTTGCTTATGGTAGGCAGAAGGGCAATCTCTGTAGAGATTTGCTCCTCATATAAGATGTTGCTGTGAAACAATGGCCGACCTCTTGGAAGGTTCGACCCTTTTTCTTTTTTTAAATATTGTATACAGAAATGGGAAATCTCTGTGACCGATTTAACCT
ATTTAATTGTTAAAACATTGCTTACATCCTTCAATTAATGATTATGAAACTTGCTGGCGCTAATAGCTCGAGTAAGACATTTGACTCTTCATAAATTCAACCTCTGTAATCGAAATTTATTTGACTAGATATTATGGAAAAGATTGTGTATCTTGAGATTCAGTAATGGAAATAAAATTTAAAGACTTCCGTCCATTTAC
TTATGAGGGGACAACCATCTGTTTCATTTGACTGTTAGAGTTGAATTTAGTAGAAGTTTCAAGTGCATTTAAAGTATTGTTATAAAT

>TRINITY_DN134584_c2_g1_i6 from sample A1 / Example unspliced isoform:

GATTGCTTCCGGTTTGTGTTTTTCGTTTAACTGTATTTGTGATCCTCGCAGGAGCAGGAGGTGCGACCTTCGAGATCGAGAACAATTGCCCATTTACGGTTCGGCCGCAGGAGCAGGAGGTGGGACCTTCCAAATCGAGAACAATTGCCCATTTACGGTTTGGGCAGCCGGATCACCTGGCGGTGGCAAACAGCTTCAGA
AAGGGCAGTCATGGACTCTTCAAGTACACGCGGATACAGAACGGGGCACGATTTGGGGGCACACGTGATGTTCCTTCGATGGCAGCTCGACAACTGTGCAGTCGTATGGGCTCAGCTGCGAGGACTGGTGTTGGGCCATTTGGGTTGCTTGTTTTGGCTTCAAAGGACTTGAGTGAACGCACTGCTGTGTTTTTTCAAAT
CGTACGATATCGAAACGAATTGAATCTATTAATGTGCAGTGACCAGAGCTGATAGTCTTTCCAGAACGGCGTTGATAAGGCAACATACGGAACTTTCGTGAATCATTTGTGTTCTTTCAAGGAAAAGAAATTTTCACTGAGAGTCCTTgtaagctgttttacatgaaaacttttaaaatcgacattttaaaatttcttga
gaaactaaattagctcttcaaattttccttcttgaatttattgttgtagcatatattggttattggttttttattttacttgttaatgaaatgacagGTTGATCATTCAATCCTGGAAAGCTTTGGTGAAGGGTGAAAGGCGTGCATACCGGCTAGAGCTTAGTTCGTTTGAAAATCTAATGTGTTGTTTGTGAGTGCAG
GGTTTGAACAAGTGAGGAACGGGTTTGGTAGAGATAGCTTATTCGTGTAACTCCAAAACCCCAACCTGTCCAAATGCATCCAAACACGTGTTCTGGGATGCAGTCCATCCAACAAGCCTTGTTTACTTTAGCATTGCACAAAGAATCCTTGTTTACTTCTCATGCGATAACCTACCTCCACTCCTTTATACTTTGCTTAT
GGTAGGCAGAAGGGCAATCTCTGTAGAGATTTGCTCCTCATATAAGATGTTGCTGTGAAACAATGGCCGACCTCTTGGAAGGTTCGACCCTTTTTCTTTTTTTAAATATTGTATACAGAAATGGGAAATCTCTGTGACCGATTTAACCTATTTAATTGTTAAAACATTGCTTACATCCTTCAATTAATGATTATGAAACT
TGCTGGCGCTAATAGCTCGAGTAAGACATTTGACTCTTCATAAATTCAACCTCTGTAATCGAAATTTATTTGACTAGATATTATGGAAAAGATTGTGTATCTTGAGATTCAGTAATGGAAATAAAATTTAAAGACTTCCGTCCATTTACTTATGAGGGGACAACCATCTGTTTCATTTGACTGTTAGAGTTGAATTTAGT
AGAAGTTTCAAGTGCATTTAAAGTATTGTTATAAAT