sp|Q94C48|WDL5_ARATH ----> Protein WVD2-like 5
Intron 1 GTATTGATCG ... TGTGCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.95 | 386.8 | 165 | 70.3 |
| A2 | 33.44 | 362.3 | 182 | 35.5 |
| A3 | 33.23 | 484.3 | 241 | 48.8 |
| A4 | 34.3 | 256.7 | 134 | 36.9 |
| A5 | 37.77 | 189.7 | 115 | 23.7 |
| A6 | 33.7 | 29.6 | 15 | 5 |
| A7 | 30.96 | 350.4 | 157 | 56.5 |
| A8 | 30.54 | 109.2 | 48 | 11.7 |
| A9 | 31.75 | 268.8 | 125 | 50.7 |
| A10 | 32.32 | 413 | 197 | 55.9 |
>TRINITY_DN119682_c0_g1_i4 from sample A1 / Example spliced isoformTATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGAGTGGTATCC
GGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACAGCCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATG
CAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGC
GAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCC
ACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTG
TAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGT
TCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTA
CTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGGTATTTAGCATATTTTCAGATT
TTTGTTGAAGATTTCTTCATTAGATACCTTTTTGCATCATAGTTGAACATTGCTGCTTTGTGCACTTGAACTTACTCCAAAGTTTATATCCAAGCAACTAGTAATCTAAAATGTCAAGTGAATGTTTGGATTCTCAAGGAAACAAAATGTTTTTGTGTGGGAGTGGGGATTGAAAATGTGTCAAAGAGAGCTAACGTTTG
AACAGCACTTTTGTTGCTTGAATGCAAAAAAGGCCAAAATGTTCTGAAGACTATGTACAGACATCCTACAATGGCAGAGAGGTCCTAGAAAATTAGAAACATGTAATGCTTTGCATTCCATTCCAAATGCATTTAGTTTTAAAGGAAGTATCACTTACATCCGGGGGTGAAAATCCAGTGGTCCTTTTCTAAAACACCAA
GTCATACAATATGCTTGCGACATAAGATAGGCTAATCATACTGGAATATTTGATTTCCAGTTCGTTCAAGCAATATGTGCTATGTTCCGTTACTACTCTACACAAGGTTTTCTATAGCGTAGGTAAACATAATAGATGTATTCAAATTTCAATAATCAATTCTGAAGAGAACAATGAAGCTAGAAATAGTAAATTTTGTC
TGATAGAAATGCTTATTTTAAAATCCAAGAGGATTGTACTATCTTAGATTTAGATGGCACTAAATTTCGTGACCATGGGACAATGATAATATTGTTAGCATACATCTCAAGTCTATAGGATATTATTGCACAGTGCATATGTAAGGAACCAATGTTTAAAGTAGACAGTTGCACTTAACGAATGAATCAAGCCAATAACA
TGGACATCTTGTGAATTGTTTTGATGGATTTCTTTCTTTTACTATTCTAACCTTTTTCTGGTAACTGTTTTTATTGTATATTGGATTTTTATGTATACAACATAATGCAAACCTAGACTTGATGACAACCAAAATTTCATGCATTCCAACTCTATGATGTATATGTTAATGCATCCATACTGTGGATGCATAAAGCATAA
TTCTAAATCAGGCAAGCTTGCAACTGGAACTTATGCCTAGGAAATGCTTTTCTTTTTATTCTTGGATAAACATGTCTCATGTTGTGGTTCTTACTATTGATAGCTATCAATTTTTTTTTTACATGAAACTGCTCTAATGATTCCCACTGGTATTTAAGGCCTTGTCTCAATATAGCAGCATGTGGAGTTGTTAGTGGAAC
AAGTTTTGATACTAAAGTTTTGGAGTGAATTATTAATTCATTTCTGCATTATAAAATTTGATAAACTCATTATTGATTGTCTAAATTGGGCTAGTGGTCCATTTGTATAAAATAATTATTGAACCTTTGTTTTCAATCATTTTGGTTTTGGTCTTGGATGATGCCGTTTCTGACTGTGTTCTTGATTATAAAATTGGCCA
AAAGGTAAGTTAGCAGCCTATGAACATAGAAATACAGGCATTGAATCAGAATAATAATTCCTACCTAGTACCATATTAAAGTAAAAAGCTTGTGTAAGAATACTCTTAGGAGTAGATGTAGCATCTTCCCACCAAGGAATCTTCCAATCTATCAAGGAATTTGAGGGATTCCTCAAGTTGCTTACTCTTTCACTTTTGCC
AGAATGTTGATTGTCAAGTTCTCGAGCCATTCTTTCTTTGCTTGTCTCTCTTCAAAGTTCATGAATCATAACATTGACCAAAGAATTTGAGACATTCTTTCCACTTGGCTATTGAGGATCATCTATTATTACTATTTTTAAATCTTTCACTACACTTCGAAGCAGCTAATCTATTCTTTGTTATAGATAACACAAGGGAG
GGCATTGCATTAAGGATTCATATGACCTACATCTCCAACATTTGAGTTATCGTTCAATCTCATCCTCTAGCTAGCTTGCCATGATGTTTACACTACTATTTGTTCTCATCCTCTAGCTGGCTTGTCATGATGCTTACACTTCCTCTTTCTAATAGCCTTGCTGATTCCATTGTCATCAATGACTCGAAATCCATAATTGG
AGTGACATGAGCTTTCTCACTCAAACTTTGTTTTTATGGGAATGGCTATTGATGTAGTGTTTGTGAGTTGAATGGATACTGATGCATACAATGTGACATCGCTGCTTCTCTTTACTATGTAGTAGAGTAAGTGGCCAAATCTTTTCTCCTATAACAACATTGATTGCCTCCTTGTATTGAATTTGCTTCCTTTATGAGGA
GGT
>TRINITY_DN119682_c0_g1_i7 from sample A1 / Example unspliced isoform:TATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGgtattgatcg
tcgttttaatcattcattttggtaatcttttagttgcttttttgctaaagacggggctttaaggccgggatctggtggttattacggcctgctttgtgcatcagAGTGGTATCCGGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACA
GCCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATGCAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTA
AATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGCGAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACA
GGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCCACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATG
GCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTGTAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGAT
GGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGTTCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGT
TGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGA
TTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGATACCTACAACCCGTGCAGTATCACCTAAGTTGGGGCGCCATAACAGCAATAGAACATCTCGTTTGAGCTTGGATGAGAGCAAGATCAATGGGGGTCAACAAAAGGTC
ACGGATACTAAAGAAAGTACACCTACAAAGAAGACAATGCGGAGGTCATTGACCAGATTACCTTCTCAAAAATCTATTATGACTAAACCTATTGATAGGGTTGATAGCCCGAGACAAGGGGCACCAAAAATTTCAGAAAAGGGGTCTGTTAACAAGTCAGCTGAGAATGTAAGGGTCACTGCATCCAGGGTAGGTCAAGA
TTCTTCTGCTAGTGTAAGTGATGAAGAGAGAGCGAAAATGAATAAATCCGAAGCTGTAAAAGAGAAAAGCGATGAACAGTCAAATCAGCTGTGTGGGAGCTCAGAAGTCAATCTTGAGAATGGCACTGTTGAATATGGATCTATTGGTGTTCTTACACCATGTGAAAATTCACAAGCCTCAGAAGGAACTGAATCAAAGA
GTAATGGAGGTGGAATAGTTGCTCATGTCATCGAGGAAAATAAATCCGAGGAAACCAAAGCAGCCATCAGAAAAGGAGACATAAATCCAGTACTAGAGCAAATTAAATATACAGCACCTATAAATAATTCCAAAATAGAAGTTGTTGGTACTGATTCTGAAATAGACATGAAAGACATAGCTGCCATTGTGACAGACATT
GCTGTATAGTTTTGAGCACTGAAGCTCTTGCCTGCCTTTTTTGTATATCAGTTGTTAAAGAGTAAACAATACTTGGTATATATATGGGGATGAAGGGGTTGCATTGAAATCATGTCTTGAAGCTGTGAACGCTCATCCAGCATCCAACATCATCATTCATCTTAAAATGGAAGATACAACCGATCTACTATTGTATTGTG
TGTATTCTGCAACAAAGCAGTTTATGTACTGCTATGGCCTTAGGTTGCTGAAGTTGAGAGCAAACAACTATGGCCAATAATGCTGGTTTATGTTTCACTTTGTTTGGTGAAGTCTCTTGAAGGAGGCTGTTTGGTTGAAGAACAAAGTTTGAAGTTGAACTTATGGTTGGATTACATAGTACAGACTTATTGGATTCTTT
CACTAGTGACCAGATAACTTCAATAAGAACGCTTTAGGCATCTTCTGTCTCTAAATGTAATTTTTGAAGTACTTGACTCGTTAATATATAAAGGATTGTCATTAGAATATGGTTTGTAAATTCGCATAAATATGCAGTCAACTGTTAGAACGACTTTCCATGATATTGTTGTAGCTATGGCGAATGTGTCTACCGTTGAA
ATTCTTAGTTGGGGATGTATGATCAGAGCAGCCGATTTGTGATAATCTATTTTTACCAAATAAAGTGCATTTATGTGTGGTTACCCAC
Intron 2 GTAAGTCATT ... TGTCTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.04 | 336 | 5 | 30.4 |
| A2 | 7.37 | 199 | 4 | 16.6 |
| A3 | 6.3 | 210 | 2 | 14.6 |
| A4 | 9.87 | 88 | 13 | 9.8 |
| A5 | 5.14 | 64 | 0 | 3.6 |
| A6 | 7.69 | 34 | 0 | 3 |
| A7 | 8.31 | 199.8 | 0 | 19.2 |
| A8 | 9.49 | 138 | 0 | 15.4 |
| A9 | 6.56 | 220 | 0 | 16.2 |
| A10 | 5.93 | 228 | 0 | 15 |
>TRINITY_DN119682_c0_g1_i4 from sample A1 / Example spliced isoformTATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGAGTGGTATCC
GGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACAGCCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATG
CAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGC
GAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCC
ACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTG
TAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGT
TCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTA
CTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGGTATTTAGCATATTTTCAGATT
TTTGTTGAAGATTTCTTCATTAGATACCTTTTTGCATCATAGTTGAACATTGCTGCTTTGTGCACTTGAACTTACTCCAAAGTTTATATCCAAGCAACTAGTAATCTAAAATGTCAAGTGAATGTTTGGATTCTCAAGGAAACAAAATGTTTTTGTGTGGGAGTGGGGATTGAAAATGTGTCAAAGAGAGCTAACGTTTG
AACAGCACTTTTGTTGCTTGAATGCAAAAAAGGCCAAAATGTTCTGAAGACTATGTACAGACATCCTACAATGGCAGAGAGGTCCTAGAAAATTAGAAACATGTAATGCTTTGCATTCCATTCCAAATGCATTTAGTTTTAAAGGAAGTATCACTTACATCCGGGGGTGAAAATCCAGTGGTCCTTTTCTAAAACACCAA
GTCATACAATATGCTTGCGACATAAGATAGGCTAATCATACTGGAATATTTGATTTCCAGTTCGTTCAAGCAATATGTGCTATGTTCCGTTACTACTCTACACAAGGTTTTCTATAGCGTAGGTAAACATAATAGATGTATTCAAATTTCAATAATCAATTCTGAAGAGAACAATGAAGCTAGAAATAGTAAATTTTGTC
TGATAGAAATGCTTATTTTAAAATCCAAGAGGATTGTACTATCTTAGATTTAGATGGCACTAAATTTCGTGACCATGGGACAATGATAATATTGTTAGCATACATCTCAAGTCTATAGGATATTATTGCACAGTGCATATGTAAGGAACCAATGTTTAAAGTAGACAGTTGCACTTAACGAATGAATCAAGCCAATAACA
TGGACATCTTGTGAATTGTTTTGATGGATTTCTTTCTTTTACTATTCTAACCTTTTTCTGGTAACTGTTTTTATTGTATATTGGATTTTTATGTATACAACATAATGCAAACCTAGACTTGATGACAACCAAAATTTCATGCATTCCAACTCTATGATGTATATGTTAATGCATCCATACTGTGGATGCATAAAGCATAA
TTCTAAATCAGGCAAGCTTGCAACTGGAACTTATGCCTAGGAAATGCTTTTCTTTTTATTCTTGGATAAACATGTCTCATGTTGTGGTTCTTACTATTGATAGCTATCAATTTTTTTTTTACATGAAACTGCTCTAATGATTCCCACTGGTATTTAAGGCCTTGTCTCAATATAGCAGCATGTGGAGTTGTTAGTGGAAC
AAGTTTTGATACTAAAGTTTTGGAGTGAATTATTAATTCATTTCTGCATTATAAAATTTGATAAACTCATTATTGATTGTCTAAATTGGGCTAGTGGTCCATTTGTATAAAATAATTATTGAACCTTTGTTTTCAATCATTTTGGTTTTGGTCTTGGATGATGCCGTTTCTGACTGTGTTCTTGATTATAAAATTGGCCA
AAAGGTAAGTTAGCAGCCTATGAACATAGAAATACAGGCATTGAATCAGAATAATAATTCCTACCTAGTACCATATTAAAGTAAAAAGCTTGTGTAAGAATACTCTTAGGAGTAGATGTAGCATCTTCCCACCAAGGAATCTTCCAATCTATCAAGGAATTTGAGGGATTCCTCAAGTTGCTTACTCTTTCACTTTTGCC
AGAATGTTGATTGTCAAGTTCTCGAGCCATTCTTTCTTTGCTTGTCTCTCTTCAAAGTTCATGAATCATAACATTGACCAAAGAATTTGAGACATTCTTTCCACTTGGCTATTGAGGATCATCTATTATTACTATTTTTAAATCTTTCACTACACTTCGAAGCAGCTAATCTATTCTTTGTTATAGATAACACAAGGGAG
GGCATTGCATTAAGGATTCATATGACCTACATCTCCAACATTTGAGTTATCGTTCAATCTCATCCTCTAGCTAGCTTGCCATGATGTTTACACTACTATTTGTTCTCATCCTCTAGCTGGCTTGTCATGATGCTTACACTTCCTCTTTCTAATAGCCTTGCTGATTCCATTGTCATCAATGACTCGAAATCCATAATTGG
AGTGACATGAGCTTTCTCACTCAAACTTTGTTTTTATGGGAATGGCTATTGATGTAGTGTTTGTGAGTTGAATGGATACTGATGCATACAATGTGACATCGCTGCTTCTCTTTACTATGTAGTAGAGTAAGTGGCCAAATCTTTTCTCCTATAACAACATTGATTGCCTCCTTGTATTGAATTTGCTTCCTTTATGAGGA
GGT
>TRINITY_DN119682_c0_g1_i5 from sample A1 / Example unspliced isoform:TATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGAGTGGTATCC
GGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACAGCCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATG
CAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGC
GAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCC
ACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTG
TAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGGTAAAGATCTGAATTATATTAGCTCCCTTGAGCTCCTGATTTTTAATA
GGATACTCAGGGAGTGTTGAAGCTGAGTATGGACCCTTACAGGGAATGGTAGACTTGATGATCTTCATTATTTGAGTTTTGAAAATTCAAAGCTGCGCCTTTAGGTATTTACTATTTTGTGATGTCAATGGAAGTTGGTTTTTAATACTCCTTGCTTGAGCAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAA
AGTTTTCACGTTCTCACAGCATGAAgtaagtcattcattaatctaagaacacagtcagtatttctcagagctgaatattttccttccactggctaaaaatatgtagttattcttaaaggttgaattcttctgtgtatgaggaaaatttattcattgtctggtagATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGA
GGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATA
TGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGATACCTACAACCCGTGCAGTATCACCTAAGTTGGGGCGCCATAACAGCAATAGAACATCTCGTTTGAGCTTG
GATGAGAGCAAGATCAATGGGGGTCAACAAAAGGTCACGGATACTAAAGAAAGTACACCTACAAAGAAGACAATGCGGAGGTCATTGACCAGATTACCTTCTCAAAAATCTATTATGACTAAACCTATTGATAGGGTTGATAGCCCGAGACAAGGGGCACCAAAAATTTCAGAAAAGGGGTCTGTTAACAAGTCAGCTGA
GAATGTAAGGGTCACTGCATCCAGGGTAGGTCAAGATTCTTCTGCTAGTGTAAGTGATGAAGAGAGAGCGAAAATGAATAAATCCGAAGCTGTAAAAGAGAAAAGCGATGAACAGTCAAATCAGCTGTGTGGGAGCTCAGAAGTCAATCTTGAGAATGGCACTGTTGAATATGGATCTATTGGTGTTCTTACACCATGTG
AAAATTCACAAGCCTCAGAAGGAACTGAATCAAAGAGTAATGGAGGTGGAATAGTTGCTCATGTCATCGAGGAAAATAAATCCGAGGAAACCAAAGCAGCCATCAGAAAAGGAGACATAAATCCAGTACTAGAGCAAATTAAATATACAGCACCTATAAATAATTCCAAAATAGAAGTTGTTGGTACTGATTCTGAAATA
GACATGAAAGACATAGCTGCCATTGTGACAGACATTGCTGTATAGTTTTGAGCACTGAAGCTCTTGCCTGCCTTTTTTGTATATCAGTTGTTAAAGAGTAAACAATACTTGGTATATATATGGGGATGAAGGGGTTGCATTGAAATCATGTCTTGAAGCTGTGAACGCTCATCCAGCATCCAACATCATCATTCATCTTA
AAATGGAAGATACAACCGATCTACTATTGTATTGTGTGTATTCTGCAACAAAGCAGTTTATGTACTGCTATGGCCTTAGGTTGCTGAAGTTGAGAGCAAACAACTATGGCCAATAATGCTGGTTTATGTTTCACTTTGTTTGGTGAAGTCTCTTGAAGGAGGCTGTTTGGTTGAAGAACAAAGTTTGAAGTTGAACTTAT
GGTTGGATTACATAGTACAGACTTATTGGATTCTTTCACTAGTGACCAGATAACTTCAATAAGAACGCTTTAGGCATCTTCTGTCTCTAAATGTAATTTTTGAAGTACTTGACTCGTTAATATATAAAGGATTGTCATTAGAATATGGTTTGTAAATTCGCATAAATATGCAGTCAACTGTTAGAACGACTTTCCATGAT
ATTGTTGTAGCTATGGCGAATGTGTCTACCGTTGAAATTCTTAGTTGGGGATGTATGATCAGAGCAGCCGATTTGTGATAATCTATTTTTACCAAATAAAGTGCATTTATGTGTGGTTACCCAC
Intron 3 GTATTGATCG ... GTGGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.91 | 216 | 165 | 283 |
| A2 | 47.37 | 220 | 182 | 214 |
| A3 | 45.89 | 293 | 241 | 256 |
| A4 | 47.59 | 152 | 134 | 142 |
| A5 | 44.52 | 124 | 115 | 84 |
| A6 | 42.11 | 22 | 15 | 17 |
| A7 | 49.7 | 213 | 157 | 264 |
| A8 | 51.85 | 65 | 48 | 92 |
| A9 | 46.67 | 192 | 125 | 211 |
| A10 | 48.65 | 248 | 197 | 273 |
>TRINITY_DN119682_c0_g1_i2 from sample A1 / Example spliced isoformTATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGCATTTAAGAG
GTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATGCAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCA
GATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGCGAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGC
TAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCCACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATT
CCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTGTAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCC
TCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGTTCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGG
CAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGC
CAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGATACCTACAACCCGTGCAGTATCACCTAAGTTGGGGCGCCATAACAGCAATAGAACATCTCGTTTGAGCTTGGATGAGAGCAAGATCAATGGGGGTCAACAAAAGGTCACGGATACTAAAGAAAGTACACCTACAAAGAAGACAATGCGGAGG
TCATTGACCAGATTACCTTCTCAAAAATCTATTATGACTAAACCTATTGATAGGGTTGATAGCCCGAGACAAGGGGCACCAAAAATTTCAGAAAAGGGGTCTGTTAACAAGTCAGCTGAGAATGTAAGGGTCACTGCATCCAGGGTAGGTCAAGATTCTTCTGCTAGTGTAAGTGATGAAGAGAGAGCGAAAATGAATAA
ATCCGAAGCTGTAAAAGAGAAAAGCGATGAACAGTCAAATCAGCTGTGTGGGAGCTCAGAAGTCAATCTTGAGAATGGCACTGTTGAATATGGATCTATTGGTGTTCTTACACCATGTGAAAATTCACAAGCCTCAGAAGGAACTGAATCAAAGAGTAATGGAGGTGGAATAGTTGCTCATGTCATCGAGGAAAATAAAT
CCGAGGAAACCAAAGCAGCCATCAGAAAAGGAGACATAAATCCAGTACTAGAGCAAATTAAATATACAGCACCTATAAATAATTCCAAAATAGAAGTTGTTGGTACTGATTCTGAAATAGACATGAAAGACATAGCTGCCATTGTGACAGACATTGCTGTATAGTTTTGAGCACTGAAGCTCTTGCCTGCCTTTTTTGTA
TATCAGTTGTTAAAGAGTAAACAATACTTGGTATATATATGGGGATGAAGGGGTTGCATTGAAATCATGTCTTGAAGCTGTGAACGCTCATCCAGCATCCAACATCATCATTCATCTTAAAATGGAAGATACAACCGATCTACTATTGTATTGTGTGTATTCTGCAACAAAGCAGTTTATGTACTGCTATGGCCTTAGGT
TGCTGAAGTTGAGAGCAAACAACTATGGCCAATAATGCTGGTTTATGTTTCACTTTGTTTGGTGAAGTCTCTTGAAGGAGGCTGTTTGGTTGAAGAACAAAGTTTGAAGTTGAACTTATGGTTGGATTACATAGTACAGACTTATTGGATTCTTTCACTAGTGACCAGATAACTTCAATAAGAACGCTTTAGGCATCTTC
TGTCTCTAAATGTAATTTTTGAAGTACTTGACTCGTTAATATATAAAGGATTGTCATTAGAATATGGTTTGTAAATTCGCATAAATATGCAGTCAACTGTTAGAACGACTTTCCATGATATTGTTGTAGCTATGGCGAATGTGTCTACCGTTGAAATTCTTAGTTGGGGATGTATGATCAGAGCAGCCGATTTGTGATAA
TCTATTTTTACCAAATAAAGTGCATTTATGTGTGGTTACCCAC
>TRINITY_DN119682_c0_g1_i7 from sample A1 / Example unspliced isoform:TATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGgtattgatcg
tcgttttaatcattcattttggtaatcttttagttgcttttttgctaaagacggggctttaaggccgggatctggtggttattacggcctgctttgtgcatcagagtggtatccggcgacgggagcagactgctgttatgggcggtcgatgtcagctacatcttgcggcagatgagctgagacgttgcaagattcgaaca
gccctccataaaattgtattgtcttgtggattcagCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATGCAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTA
AATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGCGAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACA
GGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCCACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATG
GCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTGTAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGAT
GGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGTTCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGT
TGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGA
TTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGATACCTACAACCCGTGCAGTATCACCTAAGTTGGGGCGCCATAACAGCAATAGAACATCTCGTTTGAGCTTGGATGAGAGCAAGATCAATGGGGGTCAACAAAAGGTC
ACGGATACTAAAGAAAGTACACCTACAAAGAAGACAATGCGGAGGTCATTGACCAGATTACCTTCTCAAAAATCTATTATGACTAAACCTATTGATAGGGTTGATAGCCCGAGACAAGGGGCACCAAAAATTTCAGAAAAGGGGTCTGTTAACAAGTCAGCTGAGAATGTAAGGGTCACTGCATCCAGGGTAGGTCAAGA
TTCTTCTGCTAGTGTAAGTGATGAAGAGAGAGCGAAAATGAATAAATCCGAAGCTGTAAAAGAGAAAAGCGATGAACAGTCAAATCAGCTGTGTGGGAGCTCAGAAGTCAATCTTGAGAATGGCACTGTTGAATATGGATCTATTGGTGTTCTTACACCATGTGAAAATTCACAAGCCTCAGAAGGAACTGAATCAAAGA
GTAATGGAGGTGGAATAGTTGCTCATGTCATCGAGGAAAATAAATCCGAGGAAACCAAAGCAGCCATCAGAAAAGGAGACATAAATCCAGTACTAGAGCAAATTAAATATACAGCACCTATAAATAATTCCAAAATAGAAGTTGTTGGTACTGATTCTGAAATAGACATGAAAGACATAGCTGCCATTGTGACAGACATT
GCTGTATAGTTTTGAGCACTGAAGCTCTTGCCTGCCTTTTTTGTATATCAGTTGTTAAAGAGTAAACAATACTTGGTATATATATGGGGATGAAGGGGTTGCATTGAAATCATGTCTTGAAGCTGTGAACGCTCATCCAGCATCCAACATCATCATTCATCTTAAAATGGAAGATACAACCGATCTACTATTGTATTGTG
TGTATTCTGCAACAAAGCAGTTTATGTACTGCTATGGCCTTAGGTTGCTGAAGTTGAGAGCAAACAACTATGGCCAATAATGCTGGTTTATGTTTCACTTTGTTTGGTGAAGTCTCTTGAAGGAGGCTGTTTGGTTGAAGAACAAAGTTTGAAGTTGAACTTATGGTTGGATTACATAGTACAGACTTATTGGATTCTTT
CACTAGTGACCAGATAACTTCAATAAGAACGCTTTAGGCATCTTCTGTCTCTAAATGTAATTTTTGAAGTACTTGACTCGTTAATATATAAAGGATTGTCATTAGAATATGGTTTGTAAATTCGCATAAATATGCAGTCAACTGTTAGAACGACTTTCCATGATATTGTTGTAGCTATGGCGAATGTGTCTACCGTTGAA
ATTCTTAGTTGGGGATGTATGATCAGAGCAGCCGATTTGTGATAATCTATTTTTACCAAATAAAGTGCATTTATGTGTGGTTACCCAC
Intron 4 GTAAAGATCT ... GCTTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.6 | 308 | 43 | 5 |
| A2 | 2.98 | 228 | 31.8 | 7 |
| A3 | 0.89 | 222 | 32.4 | 2 |
| A4 | 11.63 | 114 | 24.6 | 15 |
| A5 | 0 | 58 | 5.4 | 0 |
| A6 | 0 | 23 | 2.4 | 0 |
| A7 | 0 | 235 | 33 | 0 |
| A8 | 0 | 159 | 20.4 | 0 |
| A9 | 0 | 273 | 46.8 | 0 |
| A10 | 0 | 265 | 35.4 | 0 |
>TRINITY_DN119682_c0_g1_i4 from sample A1 / Example spliced isoformTATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGAGTGGTATCC
GGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACAGCCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATG
CAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGC
GAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCC
ACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTG
TAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGT
TCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTA
CTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGGTATTTAGCATATTTTCAGATT
TTTGTTGAAGATTTCTTCATTAGATACCTTTTTGCATCATAGTTGAACATTGCTGCTTTGTGCACTTGAACTTACTCCAAAGTTTATATCCAAGCAACTAGTAATCTAAAATGTCAAGTGAATGTTTGGATTCTCAAGGAAACAAAATGTTTTTGTGTGGGAGTGGGGATTGAAAATGTGTCAAAGAGAGCTAACGTTTG
AACAGCACTTTTGTTGCTTGAATGCAAAAAAGGCCAAAATGTTCTGAAGACTATGTACAGACATCCTACAATGGCAGAGAGGTCCTAGAAAATTAGAAACATGTAATGCTTTGCATTCCATTCCAAATGCATTTAGTTTTAAAGGAAGTATCACTTACATCCGGGGGTGAAAATCCAGTGGTCCTTTTCTAAAACACCAA
GTCATACAATATGCTTGCGACATAAGATAGGCTAATCATACTGGAATATTTGATTTCCAGTTCGTTCAAGCAATATGTGCTATGTTCCGTTACTACTCTACACAAGGTTTTCTATAGCGTAGGTAAACATAATAGATGTATTCAAATTTCAATAATCAATTCTGAAGAGAACAATGAAGCTAGAAATAGTAAATTTTGTC
TGATAGAAATGCTTATTTTAAAATCCAAGAGGATTGTACTATCTTAGATTTAGATGGCACTAAATTTCGTGACCATGGGACAATGATAATATTGTTAGCATACATCTCAAGTCTATAGGATATTATTGCACAGTGCATATGTAAGGAACCAATGTTTAAAGTAGACAGTTGCACTTAACGAATGAATCAAGCCAATAACA
TGGACATCTTGTGAATTGTTTTGATGGATTTCTTTCTTTTACTATTCTAACCTTTTTCTGGTAACTGTTTTTATTGTATATTGGATTTTTATGTATACAACATAATGCAAACCTAGACTTGATGACAACCAAAATTTCATGCATTCCAACTCTATGATGTATATGTTAATGCATCCATACTGTGGATGCATAAAGCATAA
TTCTAAATCAGGCAAGCTTGCAACTGGAACTTATGCCTAGGAAATGCTTTTCTTTTTATTCTTGGATAAACATGTCTCATGTTGTGGTTCTTACTATTGATAGCTATCAATTTTTTTTTTACATGAAACTGCTCTAATGATTCCCACTGGTATTTAAGGCCTTGTCTCAATATAGCAGCATGTGGAGTTGTTAGTGGAAC
AAGTTTTGATACTAAAGTTTTGGAGTGAATTATTAATTCATTTCTGCATTATAAAATTTGATAAACTCATTATTGATTGTCTAAATTGGGCTAGTGGTCCATTTGTATAAAATAATTATTGAACCTTTGTTTTCAATCATTTTGGTTTTGGTCTTGGATGATGCCGTTTCTGACTGTGTTCTTGATTATAAAATTGGCCA
AAAGGTAAGTTAGCAGCCTATGAACATAGAAATACAGGCATTGAATCAGAATAATAATTCCTACCTAGTACCATATTAAAGTAAAAAGCTTGTGTAAGAATACTCTTAGGAGTAGATGTAGCATCTTCCCACCAAGGAATCTTCCAATCTATCAAGGAATTTGAGGGATTCCTCAAGTTGCTTACTCTTTCACTTTTGCC
AGAATGTTGATTGTCAAGTTCTCGAGCCATTCTTTCTTTGCTTGTCTCTCTTCAAAGTTCATGAATCATAACATTGACCAAAGAATTTGAGACATTCTTTCCACTTGGCTATTGAGGATCATCTATTATTACTATTTTTAAATCTTTCACTACACTTCGAAGCAGCTAATCTATTCTTTGTTATAGATAACACAAGGGAG
GGCATTGCATTAAGGATTCATATGACCTACATCTCCAACATTTGAGTTATCGTTCAATCTCATCCTCTAGCTAGCTTGCCATGATGTTTACACTACTATTTGTTCTCATCCTCTAGCTGGCTTGTCATGATGCTTACACTTCCTCTTTCTAATAGCCTTGCTGATTCCATTGTCATCAATGACTCGAAATCCATAATTGG
AGTGACATGAGCTTTCTCACTCAAACTTTGTTTTTATGGGAATGGCTATTGATGTAGTGTTTGTGAGTTGAATGGATACTGATGCATACAATGTGACATCGCTGCTTCTCTTTACTATGTAGTAGAGTAAGTGGCCAAATCTTTTCTCCTATAACAACATTGATTGCCTCCTTGTATTGAATTTGCTTCCTTTATGAGGA
GGT
>TRINITY_DN119682_c0_g1_i5 from sample A1 / Example unspliced isoform:TATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGAGTGGTATCC
GGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACAGCCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATG
CAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGC
GAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCC
ACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTG
TAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGgtaaagatctgaattatattagctcccttgagctcctgatttttaata
ggatactcagggagtgttgaagctgagtatggacccttacagggaatggtagacttgatgatcttcattatttgagttttgaaaattcaaagctgcgcctttaggtatttactattttgtgatgtcaatggaagttggtttttaatactccttgcttgagcagTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAA
AGTTTTCACGTTCTCACAGCATGAAGTAAGTCATTCATTAATCTAAGAACACAGTCAGTATTTCTCAGAGCTGAATATTTTCCTTCCACTGGCTAAAAATATGTAGTTATTCTTAAAGGTTGAATTCTTCTGTGTATGAGGAAAATTTATTCATTGTCTGGTAGATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGA
GGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATA
TGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGATACCTACAACCCGTGCAGTATCACCTAAGTTGGGGCGCCATAACAGCAATAGAACATCTCGTTTGAGCTTG
GATGAGAGCAAGATCAATGGGGGTCAACAAAAGGTCACGGATACTAAAGAAAGTACACCTACAAAGAAGACAATGCGGAGGTCATTGACCAGATTACCTTCTCAAAAATCTATTATGACTAAACCTATTGATAGGGTTGATAGCCCGAGACAAGGGGCACCAAAAATTTCAGAAAAGGGGTCTGTTAACAAGTCAGCTGA
GAATGTAAGGGTCACTGCATCCAGGGTAGGTCAAGATTCTTCTGCTAGTGTAAGTGATGAAGAGAGAGCGAAAATGAATAAATCCGAAGCTGTAAAAGAGAAAAGCGATGAACAGTCAAATCAGCTGTGTGGGAGCTCAGAAGTCAATCTTGAGAATGGCACTGTTGAATATGGATCTATTGGTGTTCTTACACCATGTG
AAAATTCACAAGCCTCAGAAGGAACTGAATCAAAGAGTAATGGAGGTGGAATAGTTGCTCATGTCATCGAGGAAAATAAATCCGAGGAAACCAAAGCAGCCATCAGAAAAGGAGACATAAATCCAGTACTAGAGCAAATTAAATATACAGCACCTATAAATAATTCCAAAATAGAAGTTGTTGGTACTGATTCTGAAATA
GACATGAAAGACATAGCTGCCATTGTGACAGACATTGCTGTATAGTTTTGAGCACTGAAGCTCTTGCCTGCCTTTTTTGTATATCAGTTGTTAAAGAGTAAACAATACTTGGTATATATATGGGGATGAAGGGGTTGCATTGAAATCATGTCTTGAAGCTGTGAACGCTCATCCAGCATCCAACATCATCATTCATCTTA
AAATGGAAGATACAACCGATCTACTATTGTATTGTGTGTATTCTGCAACAAAGCAGTTTATGTACTGCTATGGCCTTAGGTTGCTGAAGTTGAGAGCAAACAACTATGGCCAATAATGCTGGTTTATGTTTCACTTTGTTTGGTGAAGTCTCTTGAAGGAGGCTGTTTGGTTGAAGAACAAAGTTTGAAGTTGAACTTAT
GGTTGGATTACATAGTACAGACTTATTGGATTCTTTCACTAGTGACCAGATAACTTCAATAAGAACGCTTTAGGCATCTTCTGTCTCTAAATGTAATTTTTGAAGTACTTGACTCGTTAATATATAAAGGATTGTCATTAGAATATGGTTTGTAAATTCGCATAAATATGCAGTCAACTGTTAGAACGACTTTCCATGAT
ATTGTTGTAGCTATGGCGAATGTGTCTACCGTTGAAATTCTTAGTTGGGGATGTATGATCAGAGCAGCCGATTTGTGATAATCTATTTTTACCAAATAAAGTGCATTTATGTGTGGTTACCCAC
Intron 5 GTATCTTTTG ... CTATTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.38 | 239 | 82.2 | 32.2 |
| A2 | 17.97 | 175 | 40.9 | 29.7 |
| A3 | 17.15 | 218 | 48.6 | 40.2 |
| A4 | 19.25 | 88 | 22.3 | 15.5 |
| A5 | 16.56 | 66 | 14.2 | 7.6 |
| A6 | 24.36 | 35 | 13.2 | 4.2 |
| A7 | 8.02 | 244 | 22.2 | 64.4 |
| A8 | 7.73 | 159 | 13.8 | 33.2 |
| A9 | 9.5 | 239 | 26.3 | 51.9 |
| A10 | 7.79 | 292 | 25.6 | 60.2 |
>TRINITY_DN110146_c1_g1_i10 from sample A2 / Example spliced isoformCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATGCAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAA
TGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGCGAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGG
ACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGAAATCCGTCACAGGTACACTTGCAAAAGGTCCACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCC
AGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTGTAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGC
CACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGTTCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAG
CAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCA
ACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGATACCTACAACCCGTGCAGTATCACCTAAGTTGGGGCGCCATAACAGCAATAGAACATCTCGTTTGAGCTTGGATGAGAGCAAGATCAATGGGGGTCAACAAAAGGTCACGGATACTAAAGAAAGTACACCTACAAAGAAGAC
AATGCGGAGGTCATTGACCAGATTACCTTCTCAAAAATCTATTATGACTAAACCTATTGATAGGGTTGATAGCCCGAGACAAGGGGCACCAAAAATTTCAGAAAAGGGGTCTGTTAACAAGTCAGCTGAGAATGTAAGGGTCACTGCATCCAGGGTAGGTCAAGATTCTTCTGCTAGTGTAAGTGATGAAGAGAGAGCGA
AAATGAATAAATCCGAAGCTGTAAAAGAGAAAAGCGATGAACAGTCAAATCAGCTGTGTGGGAGCTCAGAAGTCAATCTTGAGAATGGCACTGTTGAATATGGATCTATTGGTGTTCTTACACCATGTGAAAATTCACAAGCCTCAGAAGGAACTGAATCAAAGAGTAATGGAGGTGGAATAGTTGCTCATGTCATCGAG
GAAAATAAATCCGAGGAAACCAAAGCAGCCATCAGAAAAGGAGACATAAATCCAGTACTAGAGCAAATTAAATATACAGCACCTATAAATAATTCCAAAATAGAAGTTGTTGGTACTGATTCTGAAATAGACATGAAAGACATAGCTGCCATTGTGACAGACATTGCTGTATAGTTTTGAGCACTGAAGCTCTTGCCTGC
CTTTTTTGTATATCAGTTGTTAAAGAGTAAACAATACTTGGTATATATATGGGGATGAAGGGGTTGCATTGAAATCATGTCTTGAAGCTGTGAACGCTCATCCAGCATCCAACATCATCATTCATCTTAAAATGGAAGATACAACCGATCTACTATTGTATTGTGTGTATTCTGCAACAAAGCAGTTTATGTACTGCTAT
GGCCTTAGGTTGCTGAAGTTGAGAGCAAACAACTATGGCCAATAATGCTGGTTTATGTTTCACTTTGTTTGGTGAAGTCTCTTGAAGGAGGCTGTTTGGTTGAAGAACAAAGTTTGAAGTTGAACTTATGGTTGGATTACATAGTACAGACTTATTGGATTCTTTCACTAGTGACCAGATAACTTCAATAAGAACGCTTT
AGGCATCTTCTGTCTCTAAATGTAATTTTTGAAGTACTTGACTCGTTAATATATAAAGGATTGTCATTAGAATATGGTTTGTAAATTCGCATAAATATGCAGTCAACTGTTAGAACGACTTTCCATGATATTGTTGTAGCTATGGCGAATGTGTCTACCGTTGAAATTCTTAGTTGGGGATGTATGATCAGAGCAGCCGA
TTTGTGATAATCTATTTTTACCAAATAAAGTGCATTTATGTGTGGTTATCCATGGTTAGACTCTCTTATACACCATGACTCTTAGCTTAATTGGAATAACCTTATCTTTGTTTTCTAACAGTAATCAGTTGACATTTATGTTTGTTGGCTTTGGACATTAGCTGAAGTATTTATTCGTATATTATGCAGTTATGTAGGAT
TGACCACTATATTCGTGTAGTAGCTGTGATATGCAAGGGTTGCAATACAC
>TRINITY_DN110146_c1_g1_i3 from sample A2 / Example unspliced isoform:TTCGAATATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGAGTG
GTATCCGGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATGCAGAGAAGGACTACCATGAAAATGCCAC
CACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGCGAAGCTGACCAGGACAGCACTGGTGAAG
GGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCCACGTGCATCTTCTCAGGTTCAAAAGCCA
AGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTGTAATTGCTCGGTCAAATTGCACTGTTCC
ACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGTTCTCACAGCATGAAATCCAATATCCAAA
ACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCgtatcttttgactggcatgtgaataatttacaggagcatgaaataatagagcaatttagttaagcagtattttagtatggtgtcacatgctctttttattattactgtaattttgttctgtacttataatttt
tagaagaaatgtacttaaaatccttaactatttctagAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCC
AAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGA
Intron 6 GTTTGTGCAT ... ACTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.59 | 243 | 2 | 63 |
| A2 | 15.79 | 192 | 0 | 36 |
| A3 | 19.87 | 254 | 0 | 63 |
| A4 | 12.93 | 101 | 0 | 15 |
| A5 | 20 | 56 | 0 | 14 |
| A6 | 21.82 | 43 | 0 | 12 |
| A7 | 20 | 340 | 0 | 85 |
| A8 | 26.89 | 223 | 0 | 82 |
| A9 | 24.38 | 307 | 0 | 99 |
| A10 | 19.47 | 302 | 0 | 73 |
>TRINITY_DN119682_c0_g1_i4 from sample A1 / Example spliced isoformTATTCCCCAAAATATTTTTCGCACTCGCCGAGGGTTTGCAGGCATCCGAGGGTTTGCAGATTACGGAGCTTAGAGGTCCTTGCAATGGCGATCCCGAAAGCATTCGGAGCTTGAATAGGCCACATCATCGCGCTGTATGCTAAAAATGGCCGGTTGATCGGATCCGCGGCGTTCTCGGCTTTCTAAATTGAGTGGTATCC
GGCGACGGGAGCAGACTGCTGTTATGGGCGGTCGATGTCAGCTACATCTTGCGGCAGATGAGCTGAGACGTTGCAAGATTCGAACAGCCCTCCATAAAATTGTATTGTCTTGTGGATTCAGCATTTAAGAGGTGGATGAACTGGAATCAATTTTGAAGTTGCAAAGGCTCTAGGATATTCTTTTCAGGCTGCAATGGATG
CAGAGAAGGACTACCATGAAAATGCCACCACATCTGGTGATTTGGGCTCTCAGCTTTCTGCTGAGAACGGGGACGAAGGAAACTTAAATGAGGTGTATGATGGAAATAATGGTACAGGAATTACAAAAGCAGATGAGCTTCAGGAATTTACAGTTCTAGCACAGGAAAATGAACCAGTTGAGGCATCACAGAGGAAAAGC
GAAGCTGACCAGGACAGCACTGGTGAAGGGAAAGACGGTTTAAATCTTGATTGTGAACAGAAGCCTGGTGTAGCTACTGAAAGACAGGACCAATCAGAAGAAGCTCAAGACCAGAAGAATGTAACAGCTGCTAAGGGAAACACTCACTTAAACCGGTCAAAATCACAGAAATCCGTCACAGGTACACTTGCAAAAGGTCC
ACGTGCATCTTCTCAGGTTCAAAAGCCAAGGCCTCAGAATTCAATTATTTCTTCAAAGGGAGTCTCAAAGGTTGCAGCAAAAAATGGCATGGATACGATTGGAAAGCAGAAGAATAATCCCAGTCAAGATTCCCAGATCGAGGGCACTGATGTCGCATCTCCTGCTTCAAATGGGTCACTTCCTTCATCAGCTAACCCTG
TAATTGCTCGGTCAAATTGCACTGTTCCACAGCCCTTTGCCCTTGCGACCAATAAGAGAGCTTCCACTGGAGTGCAAACTTCTGATGGTAATGCAGCTAGACGCATGAGTGCAACTAGTGCCACATCCTCCTCAACTACCAAAAAGCAACAGTTGGCCACAAAATCTGCCTCAATACCAGCAACAACAAAGTTTTCACGT
TCTCACAGCATGAAATCCAATATCCAAAACGAGAAACCTGTCAAGCAAGAGGAAATGAAGGAGGAGGAAGAAGATACCGTTTCAGTTGCCTCATCAACTTCCACTGCCTTAGGTTCTAAAGCAAGACCAGGCAGTGCTTCTTCTGTATCTGGTTTCAATTTTAGATGCAATGAACGAGCTGAGAAGCGAAAAGAGTTTTA
CTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAAAGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGGTATTTAGCATATTTTCAGATT
TTTGTTGAAGATTTCTTCATTAGATACCTTTTTGCATCATAGTTGAACATTGCTGCTTTGTGCACTTGAACTTACTCCAAAGTTTATATCCAAGCAACTAGTAATCTAAAATGTCAAGTGAATGTTTGGATTCTCAAGGAAACAAAATGTTTTTGTGTGGGAGTGGGGATTGAAAATGTGTCAAAGAGAGCTAACGTTTG
AACAGCACTTTTGTTGCTTGAATGCAAAAAAGGCCAAAATGTTCTGAAGACTATGTACAGACATCCTACAATGGCAGAGAGGTCCTAGAAAATTAGAAACATGTAATGCTTTGCATTCCATTCCAAATGCATTTAGTTTTAAAGGAAGTATCACTTACATCCGGGGGTGAAAATCCAGTGGTCCTTTTCTAAAACACCAA
GTCATACAATATGCTTGCGACATAAGATAGGCTAATCATACTGGAATATTTGATTTCCAGTTCGTTCAAGCAATATGTGCTATGTTCCGTTACTACTCTACACAAGGTTTTCTATAGCGTAGGTAAACATAATAGATGTATTCAAATTTCAATAATCAATTCTGAAGAGAACAATGAAGCTAGAAATAGTAAATTTTGTC
TGATAGAAATGCTTATTTTAAAATCCAAGAGGATTGTACTATCTTAGATTTAGATGGCACTAAATTTCGTGACCATGGGACAATGATAATATTGTTAGCATACATCTCAAGTCTATAGGATATTATTGCACAGTGCATATGTAAGGAACCAATGTTTAAAGTAGACAGTTGCACTTAACGAATGAATCAAGCCAATAACA
TGGACATCTTGTGAATTGTTTTGATGGATTTCTTTCTTTTACTATTCTAACCTTTTTCTGGTAACTGTTTTTATTGTATATTGGATTTTTATGTATACAACATAATGCAAACCTAGACTTGATGACAACCAAAATTTCATGCATTCCAACTCTATGATGTATATGTTAATGCATCCATACTGTGGATGCATAAAGCATAA
TTCTAAATCAGGCAAGCTTGCAACTGGAACTTATGCCTAGGAAATGCTTTTCTTTTTATTCTTGGATAAACATGTCTCATGTTGTGGTTCTTACTATTGATAGCTATCAATTTTTTTTTTACATGAAACTGCTCTAATGATTCCCACTGGTATTTAAGGCCTTGTCTCAATATAGCAGCATGTGGAGTTGTTAGTGGAAC
AAGTTTTGATACTAAAGTTTTGGAGTGAATTATTAATTCATTTCTGCATTATAAAATTTGATAAACTCATTATTGATTGTCTAAATTGGGCTAGTGGTCCATTTGTATAAAATAATTATTGAACCTTTGTTTTCAATCATTTTGGTTTTGGTCTTGGATGATGCCGTTTCTGACTGTGTTCTTGATTATAAAATTGGCCA
AAAGGTAAGTTAGCAGCCTATGAACATAGAAATACAGGCATTGAATCAGAATAATAATTCCTACCTAGTACCATATTAAAGTAAAAAGCTTGTGTAAGAATACTCTTAGGAGTAGATGTAGCATCTTCCCACCAAGGAATCTTCCAATCTATCAAGGAATTTGAGGGATTCCTCAAGTTGCTTACTCTTTCACTTTTGCC
AGAATGTTGATTGTCAAGTTCTCGAGCCATTCTTTCTTTGCTTGTCTCTCTTCAAAGTTCATGAATCATAACATTGACCAAAGAATTTGAGACATTCTTTCCACTTGGCTATTGAGGATCATCTATTATTACTATTTTTAAATCTTTCACTACACTTCGAAGCAGCTAATCTATTCTTTGTTATAGATAACACAAGGGAG
GGCATTGCATTAAGGATTCATATGACCTACATCTCCAACATTTGAGTTATCGTTCAATCTCATCCTCTAGCTAGCTTGCCATGATGTTTACACTACTATTTGTTCTCATCCTCTAGCTGGCTTGTCATGATGCTTACACTTCCTCTTTCTAATAGCCTTGCTGATTCCATTGTCATCAATGACTCGAAATCCATAATTGG
AGTGACATGAGCTTTCTCACTCAAACTTTGTTTTTATGGGAATGGCTATTGATGTAGTGTTTGTGAGTTGAATGGATACTGATGCATACAATGTGACATCGCTGCTTCTCTTTACTATGTAGTAGAGTAAGTGGCCAAATCTTTTCTCCTATAACAACATTGATTGCCTCCTTGTATTGAATTTGCTTCCTTTATGAGGA
GGT
>TRINITY_DN119682_c0_g1_i9 from sample A1 / Example unspliced isoform:AACGAGCTGAGAAGCGAAAAGAGgtttgtgcatttttctaggattttgcttcaatattatgtgcctttccattactgtttcttaaaaaactatgtattttactgttaagttgtagaggactatgttgatagttgttctctgcacttgttcagTTTTACTCAAAGCTAGAAGAAAAGATTCAAGCGAGGGAGATGGAAAAA
AGCGATATGCAGGCCAAGTCAAAGGAGTATCAAGAGGCTGAGATTAAGCAACTAAGGAAAAGTTTAACATTCAAAGCAACACCTATGCCAAGTTTCTATCAGGAGGGAGCACCACCAAAGGTTGAGCTGAAGAAGATACCTACAACCCGTGCAGTATCACCTAAGTTGGGGCGCCATAACAGCAATAGAACATCTCGTTT
GAGCTTGGATGAGAGCAAGATCAATGGGGGTCAACAAAAGGTCACGGATACTAAAGAAAGTACACCTACAAAGAAGACAATGCGGAGGTCATTGACCAGATTACCTTCTCAAAAATCTATTATGACTAAACCTATTGATAGGGTTGATAGCCCGAGACAAGGGGCACCAAAAATTTCAGAAAAGGGGTCTGTTAACAAGT
CAGCTGAGAATGTAAGGGTCACTGCATCCAGGGTAGGTCAAGATTCTTCTGCTAGTGTAAGTGATGAAGAGAGAGCGAAAATGAATAAATCCGAAGCTGTAAAAGAGAAAAGCGATGAACAGTCAAATCAGCTGTGTGGGAGCTCAGAAGTCAATCTTGAGAATGGCACTGTTGAATATGGATCTATTGGTGTTCTTACA
CCATGTGAAAATTCACAAGCCTCAGAAGGAACTGAATCAAAGAGTAATGGAGGTGGAATAGTTGCTCATGTCATCGAGGAAAATAAATCCGAGGAAACCAAAGCAGCCATCAGAAAAGGAGACATAAATCCAGTACTAGAGCAAATTAAATATACAGCACCTATAAATAATTCCAAAATAGAAGTTGTTGGTACTGATTC
TGAAATAGACATGAAAGACATAGCTGCCATTGTGACAGACATTGCTGTATAGTTTTGAGCACTGAAGCTCTTGCCTGCCTTTTTTGTATATCAGTTGTTAAAGAGTAAACAATACTTGGTATATATATGGGGATGAAGGGGTTGCATTGAAATCATGTCTTGAAGCTGTGAACGCTCATCCAGCATCCAACATCATCATT
CATCTTAAAATGGAAGATACAACCGATCTACTATTGTATTGTGTGTATTCTGCAACAAAGCAGTTTATGTACTGCTATGGCCTTAGGTTGCTGAAGTTGAGAGCAAACAACTATGGCCAATAATGCTGGTTTATGTTTCACTTTGTTTGGTGAAGTCTCTTGAAGGAGGCTGTTTGGTTGAAGAACAAAGTTTGAAGTTG
AACTTATGGTTGGATTACATAGTACAGACTTATTGGATTCTTTCACTAGTGACCAGATAACTTCAATAAGAACGCTTTAGGCATCTTCTGTCTCTAAATGTAATTTTTGAAGTACTTGACTCGTTAATATATAAAGGATTGTCATTAGAATATGGTTTGTAAATTCGCATAAATATGCAGTCAACTGTTAGAACGACTTT
CCATGATATTGTTGTAGCTATGGCGAATGTGTCTACCGTTGAAATTCTTAGTTGGGGATGTATGATCAGAGCAGCCGATTTGTGATAATCTATTTTTACCAAATAAAGTGCATTTATGTGTGGTTACCCAC