NA ----> NA
Intron 1 GTAAGTCTTG ... TGTGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.68 | 25 | 87 | 136 |
| A2 | 84.93 | 11 | 48 | 76 |
| A3 | 78.38 | 16 | 44 | 72 |
| A4 | 76.67 | 21 | 68 | 70 |
| A5 | 76.92 | 9 | 30 | 30 |
| A6 | 76.67 | 28 | 82 | 102 |
| A7 | 84.92 | 23 | 95 | 164 |
| A8 | 86.93 | 10 | 57 | 76 |
| A9 | 79.02 | 30 | 99 | 127 |
| A10 | 86.23 | 21 | 101 | 162 |
>TRINITY_DN108160_c0_g1_i2 from sample A3 / Example spliced isoformTCCGGGCATTTGGATTTTTTTATATTTGTGGATTTACTGTTCCTTACCATGCCTGTTTGATATCATGAAACATGTAATGGTATGCATTAAATTTGGATTACTGATTTTAGTCATCATTTTGTTTTGACATGAGTATTGTTCACAAATTTGAAATTTGTAGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTG
GGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTTCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATT
TTAACTAAATGACATCTTCAAAATTCAAC
>TRINITY_DN108160_c0_g1_i1 from sample A3 / Example unspliced isoform:AGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTT
TTGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGC
TGACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAAT
TTGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGT
TCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATgtaagtcttgtgtcaggcgtgtagagaagatggacaaggatgttgaaaatgcctgtga
aacagGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAG
AGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCT
GCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCC
TGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTC
CTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGA
CATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTT
TGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCC
TATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGA
TTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAA
GCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGA
TAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCA
Intron 2 GTTGTCTACT ... GAATGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.8 | 136 | 8.5 | 55 |
| A2 | 30.28 | 76 | 6 | 33 |
| A3 | 37.65 | 72 | 11 | 43.5 |
| A4 | 23.91 | 70 | 10 | 22 |
| A5 | 30.23 | 30 | 5.5 | 13 |
| A6 | 26.62 | 102 | 6 | 37 |
| A7 | 31.95 | 164 | 11.5 | 77 |
| A8 | 26.21 | 76 | 5.5 | 27 |
| A9 | 31.35 | 127 | 19.5 | 58 |
| A10 | 28.32 | 162 | 13.5 | 64 |
>TRINITY_DN108160_c0_g1_i1 from sample A3 / Example spliced isoformAGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTT
TTGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGC
TGACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAAT
TTGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGT
TCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGA
AACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAG
AGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCT
GCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCC
TGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTC
CTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGA
CATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTT
TGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCC
TATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGA
TTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAA
GCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGA
TAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCA
>TRINITY_DN108160_c0_g1_i3 from sample A3 / Example unspliced isoform:AGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTT
TTGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGC
TGACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAAT
TTGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGT
TCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGA
AACAGgttgtctacttcgtcccccccttttattctgggttctgtaaatctgggttttgaatgagcagGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCA
GGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGAGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGG
CAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTGCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCT
TCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCTGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCA
GCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCCTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGT
ATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGACATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTA
ACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTTGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCA
CGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCTATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAA
GAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGATTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCAC
GGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAGCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGT
TCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGATAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCA
Intron 3 GTAAGAGATG ... CAAATCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.4 | 142 | 65 | 13.5 |
| A2 | 30.61 | 102 | 45 | 10.5 |
| A3 | 27.72 | 73 | 28 | 15.5 |
| A4 | 29.19 | 131 | 54 | 10.5 |
| A5 | 25.42 | 44 | 15 | 10 |
| A6 | 25 | 117 | 39 | 12 |
| A7 | 24.11 | 192 | 61 | 20.5 |
| A8 | 22.69 | 92 | 27 | 12 |
| A9 | 28.5 | 143 | 57 | 15 |
| A10 | 26.07 | 156 | 55 | 14.5 |
>TRINITY_DN127399_c2_g1_i7 from sample A1 / Example spliced isoformGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTTT
TGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGCT
GACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAATT
TGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTT
CACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGAA
ACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGA
GCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTG
CTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCT
GAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCC
TCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGAC
ATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTT
GGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCT
ATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGAT
TTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAG
CAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGAT
AAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCATGAAGAACAATAGTTTGCAACTATTTTAATCATTATTTTTTCTTTATTCA
>TRINITY_DN127399_c2_g1_i4 from sample A1 / Example unspliced isoform:GAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTTT
TGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGCT
GACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAATT
TGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTT
CACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAgtaagagatgttttccttcttgtctctgtttatgttttatctggaaaaataagtttgcatttttctgctgctgaaatttgtagacacaattttatactgatgcattttatcctcttgccaaatcttagAAACTTGCTGTTGGAGGTGCACCAG
AAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGAAACAGGTAGGAGTATAAAGAGCTCTCGCTGTAGAGCAGTGCTTGATTGTCCGCTATATTGTTTCTTTCTTATC
AACCTTCCTTGTGGCATTGATATAAAGATTGAGTTGAACAAAGAGTTGATATAAGGTTTGGAATTCTGGCTGCATTAGCTCCAAAACAAGACTATTGAAGTAGAGGAAAACATTAAAATTCTGGTTTGAGTTGCCATATTAAATGAAAATTGATTTTTTGCTTATAAACCCCTCTGCCAGCTTTGGAATAACATTGATAC
TATTTATCTTGAATAAAAGACCGTATAATGAATGGGAACAAGTTTGGGTCATAGGCATAGTTTTTGATAGATGTCAAGTTGTGAAGTTACAGGCCATCGAACAATGCCCTTGGAAGCTCCACCATACACACTATGACACTTGCTTACTCCAGTGTGGATCCCCGTTTTGGTTCTGGATTTGTCAGTTAGGCATATCCAAA
CAGTCTGGAGGCAGTTCCTGATTTTTGGAGGCATATCCAGTGACATTCAACCCCATCACATGCTGATCCCAAGGAAAATTTGACATAGTTGCAGGTTATTTTATGAAAGGTATTTTGCATTTTTTGCCACTTGTTGAAATCCCAAGCCCCTTAAAATACTCTTTAAGATAACCTTGCCCTGCTTCCAACACAAGACAGAG
CACTGTTTTTCAGACTGACTCAATCTTGAGCAGTGATATTGAGGCTGATATTGCACC
Intron 4 GTTGGATTTC ... TGTGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.94 | 84 | 28 | 22 |
| A2 | 25.66 | 42 | 19 | 10 |
| A3 | 19.23 | 42 | 13 | 7 |
| A4 | 23.68 | 29 | 10 | 8 |
| A5 | 26.32 | 28 | 15 | 5 |
| A6 | 23.75 | 61 | 15 | 23 |
| A7 | 18.94 | 107 | 22 | 28 |
| A8 | 20.78 | 61 | 17 | 15 |
| A9 | 20.62 | 102 | 32 | 21 |
| A10 | 18.8 | 95 | 30 | 14 |
>TRINITY_DN127399_c2_g1_i7 from sample A1 / Example spliced isoformGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTTT
TGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGCT
GACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAATT
TGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTT
CACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGAA
ACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGA
GCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTG
CTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCT
GAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCC
TCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGAC
ATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTT
GGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCT
ATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGAT
TTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAG
CAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGAT
AAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCATGAAGAACAATAGTTTGCAACTATTTTAATCATTATTTTTTCTTTATTCA
>TRINITY_DN127399_c2_g1_i6 from sample A1 / Example unspliced isoform:GAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTTT
TGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGCT
GACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAATT
TGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTT
CACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGAA
ACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGgttggatttcgtagtaattcaaagaacttttttttttcttttaaaattttaacttc
taagcataaatttgaggagtgtctcagcatcacaagcagtcagaagtacaattctgacaagatctgtgttacagGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGAGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAG
AGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTGCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGC
TGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCTGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTC
GGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCCTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCG
CCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGACATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTA
CAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTTGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTA
GTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCTATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGA
GAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGATTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACT
TGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAGCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTA
GGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGATAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCA
TTTGAAGTTCCCATGAAGAACAATAGTTTGCAACTATTTTAATCATTATTTTTTCTTTATTCA
Intron 5 GTTGGATTTC ... TGTGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.94 | 84 | 28 | 22 |
| A2 | 25.66 | 42 | 19 | 10 |
| A3 | 19.23 | 42 | 13 | 7 |
| A4 | 23.68 | 29 | 10 | 8 |
| A5 | 26.32 | 28 | 15 | 5 |
| A6 | 23.75 | 61 | 15 | 23 |
| A7 | 18.94 | 107 | 22 | 28 |
| A8 | 20.78 | 61 | 17 | 15 |
| A9 | 20.62 | 102 | 32 | 21 |
| A10 | 18.8 | 95 | 30 | 14 |
>TRINITY_DN36325_c0_g1_i2 from sample A8 / Example spliced isoformTGGGCGGCAAAAAAAAAAAAAAAGTTAAAAGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTT
CGAGATCCTGGAGCGTCCTGCTCGTATTTTTGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAAC
AACAGTGCATTTAACGAACAAATATTAGCTGACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTT
ACAAAACAGCAAGCGAAAAGGATCTGAATTTGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTC
CTCCGGCTTTGGAGATCAATGGCGGAGGTTCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAG
ATGGACAAGGATGTTGAAAATGCCTGTGAAACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGAC
TCAACTGCAGGTTGCTCAGGGTCAGCTAGAGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAA
TGCCACCAGTAACATCTTTTGCGGAGGCTGCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTT
CCAGTTGAAATGTCATCTGGTTACCCTCCTGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACC
CCCTGGCACTGTGCAGAATCATACTTCTCCTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTAC
CTGGACATCCAATAATGGGAGTGCCACGACATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGA
GAAAGTTGGTATGAGTTTTCTTACTGCTTTGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACA
CATGATTTGCTACATAATCATTTGACCCCTATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGACTTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAG
TTGTAATTTATCATTTTAGTCCAATTTGATTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTA
TACATCTGACATTTCTTTTTCAGGCAGAAGCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGA
ACCCCAATTTCAATGACAAGCGTACAAGATAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCATGAAGAACAATAGTTTGCAACTATTTTAATCATTATTTTTTCTTTATTCATGTCATAGTAATGACTACAAAATGATATCTTATAGGG
ATTATTGGCTTTATATTGGGAGATCTCTCAAAATTAAAATGACAAAAATGATGAAAATAATATTGGGAGATCTCTCAAAATTAAAATGGCAAAAATGATGAAAATAATATTGGGACATCTCTCAAAATTAAAATGACAAAGTTGATGACAAGTTTCTTTTCATGGGAGTTGGTCAGACTTGATGCTTAAGTGCATTTATG
TTGTTAACTGGTCCTTGTATAATAAAACTGCT
>TRINITY_DN36325_c0_g1_i1 from sample A8 / Example unspliced isoform:TGGGCGGCAAAAAAAAAAAAAAAGTTAAAAGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTT
CGAGATCCTGGAGCGTCCTGCTCGTATTTTTGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAAC
AACAGTGCATTTAACGAACAAATATTAGCTGACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTT
ACAAAACAGCAAGCGAAAAGGATCTGAATTTGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTC
CTCCGGCTTTGGAGATCAATGGCGGAGGTTCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAG
ATGGACAAGGATGTTGAAAATGCCTGTGAAACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGgttggatttcgtagtaattcaaagaa
ctttttttttttcttttaaaattttaacttctaagcataaatttgaggagtgtctcagcatcacaagcagtcagaagtacaattctgacaagatctgtgttacagGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGAGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTAC
CAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTGCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCAT
CTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCTGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCA
GACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCCTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCA
ACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGACATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACC
AGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTTGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCAC
AGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCTATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAG
GGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGACTTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGATTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTG
GGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAGCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCC
ACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGATAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGT
GGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCATGAAGAACAATAGTTTGCAACTATTTTAATCATTATTTTTTCTTTATTCATGTCATAGTAATGACTACAAAATGATATCTTATAGGGATTATTGGCTTTATATTGGGAGATCTCTCAAAATTAAAATGACAAAAATGATGAAAATAATATTGGGAG
ATCTCTCAAAATTAAAATGGCAAAAATGATGAAAATAATATTGGGACATCTCTCAAAATTAAAATGACAAAGTTGATGACAAGTTTCTTTTCATGGGAGTTGGTCAGACTTGATGCTTAAGTGCATTTATGTTGTTAACTGGTCCTTGTATAATAAAACTGCT
Intron 6 GTATCCTTGT ... CTCTGGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.13 | 125 | 38 | 25 |
| A2 | 18.75 | 91 | 21 | 21 |
| A3 | 15.79 | 120 | 27 | 18 |
| A4 | 16.67 | 110 | 24 | 20 |
| A5 | 13.46 | 45 | 8 | 6 |
| A6 | 16.08 | 60 | 14 | 9 |
| A7 | 14.71 | 116 | 27 | 13 |
| A8 | 18.75 | 78 | 16 | 20 |
| A9 | 14.01 | 132 | 21 | 22 |
| A10 | 18.15 | 106 | 34 | 13 |
>TRINITY_DN127399_c2_g1_i7 from sample A1 / Example spliced isoformGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTTT
TGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGCT
GACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAATT
TGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTT
CACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGAA
ACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGA
GCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTG
CTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCT
GAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCC
TCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGAC
ATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTT
GGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCT
ATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGAT
TTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAG
CAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGAT
AAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCATGAAGAACAATAGTTTGCAACTATTTTAATCATTATTTTTTCTTTATTCA
>TRINITY_DN127399_c2_g1_i5 from sample A1 / Example unspliced isoform:GAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTTT
TGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGCT
GACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAAgtatccttgttttttaaacttagattttttaccactttcaagttttgatatgttactaagagtcttatgctctacatgtaatttatcagggcagtgtccataagatgtccatgtctggttttccctgtaatatttctagactataaatatttcaaaa
gatataaagtgcaagaattcttctgcatataaagacacttatgggattttcgaattactgaaacaacatatcttatttgatttattgttattaaatgctgtactttggcagaagcaaattgtgatgttggaatttgatttgttcattttttgtttgagtgaattatgtttccttgactctggttagCGTTATCACATTGG
TGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAATTTGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGG
AGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTTCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTG
TTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATGTAAGTCTTGTGTCAGGCGTGTAGAGAAGATGGACAAGGATGTTGAAAATGCCTGTGAAACAGGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTT
TTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCAGGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGAGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCA
GTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGGCAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTGCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCG
CTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCTTCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCTGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTAC
ATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCAGCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCCTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCC
GCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGTATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGACATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAG
GAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTAACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTTGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAA
TTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCACGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCTATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAA
GCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAAGAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGATTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGG
TTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCACGGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAGCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTC
TGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGTTCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGATAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACA
GAATTACTTCGCATTTGAAGTTCCCATGAAGAACAATAGTTTGCAACTATTTTAATCATTATTTTTTCTTTATTCA
Intron 7 GTAAGTCTTG ... GAATGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.59 | 25 | 71 | 55 |
| A2 | 76.84 | 11 | 40 | 33 |
| A3 | 72.41 | 16 | 39 | 45 |
| A4 | 65.29 | 21 | 57 | 22 |
| A5 | 70.49 | 9 | 30 | 13 |
| A6 | 64.33 | 28 | 64 | 37 |
| A7 | 77.23 | 23 | 78 | 78 |
| A8 | 77.01 | 10 | 40 | 27 |
| A9 | 70.73 | 30 | 87 | 58 |
| A10 | 77.54 | 21 | 81 | 64 |
>TRINITY_DN108160_c0_g1_i2 from sample A3 / Example spliced isoformTCCGGGCATTTGGATTTTTTTATATTTGTGGATTTACTGTTCCTTACCATGCCTGTTTGATATCATGAAACATGTAATGGTATGCATTAAATTTGGATTACTGATTTTAGTCATCATTTTGTTTTGACATGAGTATTGTTCACAAATTTGAAATTTGTAGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTG
GGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGTTCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATT
TTAACTAAATGACATCTTCAAAATTCAAC
>TRINITY_DN108160_c0_g1_i3 from sample A3 / Example unspliced isoform:AGAAAAACATAATCCCAAATCTCACCTCGTGTTTCACAAAGTCCCATTGCATCTGCTCCGTGCTCGTACACATCTGCTCCAGCTCTCTTCTTATGCTCGGATAAAAGACCATTTTATTGTCTAGTGGGTAGCCTTTAAATTTGTTACTGTTTGATACCCACATATTTTTTTCGAGATCCTGGAGCGTCCTGCTCGTATTT
TTGTTACAAATTAAGAAAACTGCAGAGGAGTGGGAGGAGCGGAGATTATTGATGATATCGTGATGCCATTCGCAGCAGAGACTTAGTAGTACCATGCCCGATCGGGAAACCAGGGTTTTGCAGAACCTTTACATGCAAATCAAGTGAAACATCTGATTGGAAGGGATGAACAACAGTGCATTTAACGAACAAATATTAGC
TGACAAGCTTTCCAAGCTGAACAACTCACAACAGAGCATTGAAACGTTATCACATTGGTGTATCTTCCACCGGAAGAAAGCAAAGCAGGTTGTGGAAACATGGGATAGACAATTCCATAATTCACTCAGGGAACAGCGAGTGCCATTCCTGTATCTAGCAAATGATATTTTACAAAACAGCAAGCGAAAAGGATCTGAAT
TTGTTGCTGAATTTTGGAAGGTTCTTCCTGCAGTTCTCAAGGATGTATATGAGAATGGAGAGGAGTATGGAAGGAGTGTGGTTTTTCGATTGGTTGATATATGGGAAGAACGGAAAGTATTTGGATCTCGTGGGCGGAGTCTTAGGGAAGAGATGCTTGGAAAGGATCCTCCTCCGGCTTTGGAGATCAATGGCGGAGGT
TCACACTCCGTCAAAATAGTAAGAAAGACTCCACATTCCGTGAAAATAAAACTTGCTGTTGGAGGTGCACCAGAAAAAATTGTATCAGCTTTTCAAGCTGTCCATGATGGCCATATTGATGAGGAAGCAATTTTAACTAAATgtaagtcttgtgtcaggcgtgtagagaagatggacaaggatgttgaaaatgcctgtga
aacaggttgtctacttcgtcccccccttttattctgggttctgtaaatctgggttttgaatgagcagGACATCTTCAAAATTCAACCCTACGAAATGAACTTCAAGAACAGGAAACTGTTTTGAGGCAATGCATTGAACAACTTGAAAATAGTGAAACCAAACGGGCAGCTCTGGTCTCTCAGCTGAAAGAGGCACTTCA
GGAGCAGGAGTCTAAGCTGGAGCAGGTTCGGACTCAACTGCAGGTTGCTCAGGGTCAGCTAGAGCAAGCAGAAAGTATGGGTGAGCGCTTAAATAACATTACCAATAGTGGGAAAAAGCAGTCAAGACAGCAGAGTGCCACAGATGCAAATATGTTTTCTGATACAATTCCCACTCTTCATCGAGAAAATCAATCCGTGG
CAGATAAAGACCGCTCAGTTTTGGTTGTGCCAATGCCACCAGTAACATCTTTTGCGGAGGCTGCTGGAAATGTGGATGATAAGCGTAAAACGACTGCAGCATCTGTTGCAGCTGAAGTCGCTGCTAAGCTTGCTGCTTCAACCTCATCAGCCCTAATGCTTTCATCAGTTCTATCATCCTTTGCAGCCGAGGAGGCTGCT
TCAAAGACTGTTGGATTGAGAACCACCAGTCTTCCAGTTGAAATGTCATCTGGTTACCCTCCTGAAAAGAGGGCAAAACTGGAACATCAGTTTCCAAATGCAGACAGTGGCTTGACTTACATGGTTCCTCCTCGGGCACCACCTCAGGCCACTCCAATGCAGCCTCAAGCACTTCTACCACAGCAACTGTCATCTATGCA
GCATCAGCCTGGTCCTGTGCAGCACCAACCACCCCCTGGCACTGTGCAGAATCATACTTCTCCTCCGATGCAGCATCCGGCATCTTCTCCTATGCAACACCAACCTCCTTACCCTCCCCCGCCACCACCACCGCCACCACCTCCACCAGCAGTACAGTATATGCCTTCTAATGGAAATATGCTGGGTATGCCTTATGGGT
ATGGTACTGGTTTACCACCACCTCCCCCATTACCTGGACATCCAATAATGGGAGTGCCACGACATGGAATCTCACAACAATCGGTGCCACCTGGTCCTTACCAGCCTCTTCAACCCCCAGGAATGGGATTCTACAGCCAACCACCCTTGCCAACAGCTCCACCAGTTCCTCGGCAATAAAATTCTCAAGCTTTTCATCTA
ACGTGTTTGTAGCAACCCTTGAAAGTTACTTGAGAAAGTTGGTATGAGTTTTCTTACTGCTTTGGTGAGCATCTGTATTAGATTATGTAATTGTTCATGCACAGAGCATTTGTTTTTTAATTCCTGGCGGCTAGTCCAGATCTGTACAAAATTTTGAGGTCCCATTTTGCACATATCATTGCAACAATCTGTTTGATGCA
CGGCCTAAAATACTAATTCCTGCATATTGCACACATGATTTGCTACATAATCATTTGACCCCTATTCCCAATGAAGCAAAGCAAATGAGAGGAAAATTGAAGGGGAGTCTCATGCAAAAAGCAACAGGTGGGAGAATGAGCAGAATTTCATGTTTTAGGGTTCTCACTAAAGCAATCATCTTAAAATTTCATGGAGCAAA
GAAATGTGATTATGGAGTGGATTCCATAGCAAGTTGTAATTTATCATTTTAGTCCAATTTGATTTTATATGCAAAGATCCCATGCGTGCTTCTCTTGACCTGGGCAATTCTGCCTCAAGGTTTAATTTGTACTTGCAAATGAACAACACATAATTTTGCACCATAGAGAATGTGCAACTTGCAAAGCGTACATTACTCAC
GGTTCCATTTGTTCAAGTTATTTTTGAGTATTATACATCTGACATTTCTTTTTCAGGCAGAAGCAGTGTTAAGAACATTGATTCTATGATGCCACAAATCCCACATTCTACTTGGAACTCTGGTATTCTTGTAGGAGAACAGATTTGAACTTTACCAAGGGAACATGAAGTTTCCCTCCAGTATCACTACTCTAGTTTGT
TCAACTTGGATGTGAATTGATATCCTATTTTGAACCCCAATTTCAATGACAAGCGTACAAGATAAATTACAGCTTGGCAACCTAAAGTATGTTTCTTAATGTGGTAATTTTATGACAACAGAATTACTTCGCATTTGAAGTTCCCA