sp|Q9FT73|RECQ2_ARATH ----> ATP-dependent DNA helicase Q-like 2
Intron 1 GTATGTTCTC ... TCTTTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18 | 41 | 9 | 9 |
| A2 | 15.46 | 41 | 5 | 10 |
| A3 | 11.43 | 31 | 6 | 2 |
| A4 | 15.56 | 38 | 11 | 3 |
| A5 | 3.85 | 25 | 2 | 0 |
| A6 | 4.35 | 11 | 0 | 1 |
| A7 | 14.61 | 38 | 6 | 7 |
| A8 | 13.73 | 22 | 2 | 5 |
| A9 | 10 | 27 | 2 | 4 |
| A10 | 9.09 | 50 | 4 | 6 |
>TRINITY_DN101375_c0_g1_i3 from sample A4 / Example spliced isoformGCGGAGAAAAATGGGCTTTCCTCATTCCCATGTTTAAGTTTTTTCCAACACATCGAAGGAGAAATAAAGAGGCGGGAAGGCGCGCCATTATTGGGTGGCACACCAGAAGAAACAGGGAAAACATTCTGCGCCAGGCATTTAACATATTCCTTCCTCTCTCTGTGTCGGACTTTAACATTCCCAGTTCCAGCTTATTTTGA
ATATATGACGAACACTTTAAGCATGGAGGGCGCTCTCAAGAAATATTTTGGATTCTCATCTTTTAGACCGCTTCAAAAAGATTCCATAGGACAAATACTAAGAGGGAGAGATTGTCTCATTGTTATGGCTACTGGAAGTGGGAAATCTCTGTGTTATCAGATCCCTGCCTTAGTCACTCAAAAGACCGCTATAGTGATCA
GCCCTTTGATAAGCCTCATGCAGGATCAGGTAATGAGCTTGCAGCAACGAGGCATTAAAGCTCAATATTTGTGTAGTGCTCAAATGCACCGTACTGCAAGTTCAGATGCTGAGAAAGGGGAGTTTGACGTTCTGTACATGACCCCAGAGAGGGCTTGTTCTAGTTCTGACAGGTTTTGGTCAAATATGATGGAGAAGGGA
GTTTCTCTCCTTGCTATTGATGAGGCCCATTGTATCTCTGAGTGGGGTCATGACTTTAGAGAAGAATATAAGCAATTGGATAAATTGCGCCAATTTCTTCCGAATGTGCCGTTTGTTGCCTTGACAGCAACTGCAACAAAGAAGGTTGAACTCGATATTATACAATCTTTAAAGCTAAAGAATCCATATGTAAAGATTGG
TTCTTTTGATCGACCAAATATTTACTATGGTGTGAAGACTTTGAATCGGACAAGTTTGTTTAGAGAAGAGATGGCTGGTGAAATTTCAAAATATGTGAAGGGTGGTGGATCAACTATTGTGTATTGCACTACTATTAAAGATGCTGAACAGGTATCGATGTCTCTACAACAAGCAGGTGTTGAGGCTGGGGTTTATCATG
GTCAAATGTCAAATGTTTCTCGAGAGGCTATACATAGATCTTTTATCAAAGATGAACTGCAGACTGTTGTGGCAACTGTTGCCTTTGGCATGGGCATTGACAAGCCCAACATAAGGTGTGTAATACACTATGGATGTCCAAAAAGTCTAGAATCTTATTACCAGGAGAGCGGTAGATGTGGTCGGGATGGATTACCCTCG
AAATGTTGGATGTACTACTCACGTGGTGATTTTATGAAAGCAGATTTTTACACATCAGATGCACGAACTGGAGCCAGACGGAAGTCTGTGGTGGAGTCCCTTATAGCAGCACAGAAATATTGTACCCTTACAACATGTCGCAGAAAATATCTTTTGGAGTACTTTGGGGAGAATGTTGCGATTGACAATTGTGGTAATTG
CGACAACTGTACAACTTCAGTATCTGTTGATCAACGAGACATGGCAAAGGAGGCTTACTTGTTGCTGACTTGTATACATTCTTGTGGAGGACGTTGGGGCCTTAATTTTCCGATCGATGTTCTTCGTGGATCACGTACAAAGAAAGTGACAGAGAATCATTTTGACAAGCTTCCTGTACATGGTTTGGGTAAAAACTATT
CATCAAACTGGTGGAAGGCACTTGGTGACCAACTAATCAGCCTTGGTTATTTAGAAGAGACAGTATCTGACATTTTCAGGACTATCAGAGTTAGTCACCAAGGTCAGCGGTTCCTTCAATTGGCAAATCACATAAATCAGCCCCCACTTATATTACGACGAACTCCTGAGATGGTCAGTGAGGAAAACCGGGAGAATGGA
TTAAAGATTGGAAAAGTAGTAGATGGAGATATAGGGAATTTTCCTACTCTTCAAGATCAAGGGTTTTCAGAGATGGAAGTCAAACTCTACCATATGCTTTTAGACTTTAGGGCTGAGCTTGCACAGAGGGAATCTACAGCTCCATATGCAGTTTGCAGTGAAGAGACACTCCAAAAGTTGGCAAAGATCCGACCGTCTAC
CAAGGCTAGGCTAGGAAACATTGATGGTGTTAATCAGCACCTCATAACAATGCACGGCTGTCGGATTCTTGAAACAATAAAATGCTTCTCGGAAGGTTTAGGGCTTCGCTTGGATGGAGAATTGGCAGTGCAGCCAAATATTTCAAGGACATCTTTTATCAACATAGAATGTAAAGCAACCCCTGCAAAGGTGGAAGCTT
GGAGGATGTGGCAGGAGAAAGGCCTTTCTTTTTCTGAAATTGCTAGCTTACCTGAGAGACCCGTTCCAATCAAAGAATCCACAGTTTTAGAGTATATTCTTGAAGTCGCAAGGGCAGGATTTGAGGTGAATTGGATGCGCTTTTGTAAAGAGGTCGGACTTACTTATAAAATTGCAAAGGAAATTCAAGTTGGCATCAGC
AAGGCAGGTTCCAAAGAGAAGTTGAAGGCTATAAAAGAACAAGTGCCAGAATATGTGAGCTACACACAAATCAAAATAGTCTTGGTTCTGGAAGAGTGCGGTTTATCTATCGATGACATTGTAGAAATGCCATCATCAAAAGGTGAGGATGAGAGTTGCTTGAAGGATTCTCCTTCAGTATTGCAAGATGGTGCTCAAAG
CATGACACAATTTGTAAAAGAAGATGATCTGTTAAAAGCATCAAATTCTTCCGAGGAAGATGCTTTTTCAAAACCTCCATGGATATTGAGTGATACAGGAGCAACGATACACAAACGGAAAACTGAAGCGAAAAACAGTTTTTCTCGTTGTGAAAGCCCTACTAAAAAGCTCTGTTGTGAAAATGACTGGAAACCACAGT
CAGATATTGAGCTGTTGCAAGCCACAGAAGATGCCTTGTTATCATGGCTAAGTGAACGTGATGGGGCTACTGTCTCCCAGATCTCTGAGCATTTTGCTGGATCGAGTAGGGATTTTGTTCTCGAATTGTTATCAAGACTCGAGTGTGAGTTTTTAATATATAACAAAAGTAGTGTTTATAAGGTCATGTGAAAAGAATAT
GTAATATGTTAGACTGCTCTTTCTGGATGTAGAAGGAAAGGGTGAATTGTTTTGAGTGGTGCTGGCAGTGGTATGTGATGATATATCACTGCATACTTGTGTAAATTTAACAAGGACTTCATGTGATTCAACAGTATGTATATACCTATTTGGAAGAGGTGCAGTATTACTGAGCTTAATGAAAAGGAATCAATATTGAT
TTTGACGTTATTGTCTTTTAGATGCAGTGTCCAATAATAAATATTGGACTTTTCAAC
>TRINITY_DN101375_c0_g1_i6 from sample A4 / Example unspliced isoform:CAAACATAGATCCTTGGTGTTCATTACTTGAAGTAAATAATAAATATCCTAGTGCGCTAGGGACAAACATAGATAAGCAGGGGCTAAGGGGTCTCCATGTTTGATAGAATGGTGAAAAACAATCTAGTTGAAGAAAATAGCGTTAATTGTGACTACAACAAAGGCCTCTGATTTTTTTTTGACCACCTTTTGTCAATTGT
AGAAATGGTTCCCCAGTTTTAATTTGACTTGAAGATTTGTTTTGTAGGGTTGAACTCGATATTATACAATCTTTAAAGCTAAAGAATCCATATGTAAAGATTGGTTCTTTTGATCGACCAAATATTTACTATGGTGTGAAGACTTTGAATCGGACAAGTTTGTTTAGAGAAGAGATGGCTGGTGAAATTTCAAAATATGT
GAAGGGTGGTGGATCAACTATTGTGTATTGCACTACTATTAAAGATGCTGAACAGGTATCGATGTCTCTACAACAAGCAGGTGTTGAGGCTGGGGTTTATCATGGTCAAATGTCAAATGTTTCTCGAGAGGCTATACATAGATCTTTTATCAAAGATGAACTGCAGACTGTTGTGGCAACTGTTGCCTTTGGCATGGGCA
TTGACAAGCCCAACATAAGGTGTGTAATACACTATGGATGTCCAAAAAGTCTAGAATCTTATTACCAGGAGAGCGGTAGATGTGGTCGGGATGGATTACCCTCGAAATGTTGGATGTACTACTCACGTGGTGATTTTATGAAAGCAGATTTTTACACATCAGATGCACGAACTgtatgttctcttaactttgatttcctt
ggaattctaatttagattactttgaggatgtatcactgtaatgctagagctttctcacatttagatgtaatgaggattaaataaaaacatcggatttcacatgaactttcttgaagaaagggctatacttaaatgtttatagctgtttacaatatatctgctcttctgtttgataaatgattgttattacttattccttc
tttaccagGGAGCCAGACGGAAGTCTGTGGTGGAGTCCCTTATAGCAGCACAGAAATATTGTACCCTTACAACATGTCGCAGAAAATATCTTTTGGAGTACTTTGGGGAGAATGTTGCGATTGACAATTGTGGTAATTGCGACAACTGTACAACTTCAGTATCTGTTGATCAACGAGACATGGCAAAGGAGGCTTACTTG
TTGCTGACTTGTATACATTCTTGTGGAGGACGTTGGGGCCTTAATTTTCCGATCGATGTTCTTCGTGGATCACGT
Intron 2 GTATCTGCAG ... TATGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.26 | 33 | 18 | 8 |
| A2 | 40.74 | 8 | 3 | 8 |
| A3 | 30.77 | 18 | 11 | 5 |
| A4 | 31.15 | 21 | 8 | 11 |
| A5 | 29.41 | 12 | 3 | 7 |
| A6 | 20 | 12 | 3 | 3 |
| A7 | 28.21 | 28 | 11 | 11 |
| A8 | 26.83 | 30 | 7 | 15 |
| A9 | 31.3 | 45 | 17 | 24 |
| A10 | 25 | 27 | 6 | 12 |
>TRINITY_DN41209_c1_g2_i5 from sample A8 / Example spliced isoformGAAAAAGGAGCTTTCCTCATTCCCATGTTTAAGTTTTTTACAACACATTGAAGGAGAAATAAAGAGGTGGGAAGGCGCGCCATTATTGGGTGGCACACTAGAAGAAACAGGGAAAACATTCTGCGCCAGGCATTTAACATATTCCTTCCTCTCTCTGTGTCGGACTTTAACATTCCCAGTTCCAGCTTATTTTGAATATA
TGACGAACACTTTAAGCATGGAGGGCGCTCTCAAGTTATCAGATCCCTGCCTTAGTCACTCAAAAGACCGCTATAGTGATCAGCCCTTTGATAAGCCTCATGCAGGATCAGGTAATGAGCTTGCAGCAACGAGGCATTAAAGCTCAATATTTGTGTAGTGCTCAAATGCACCGTACTGCAAGTTCAGATGCTGAGAAAGG
GGAGTTTGACGTTCTGTACATGACCCCAGAGAGGGCTTGTTCTAGTTCTGACAGGTTTTGGTCAAATATGATGGAGAAGGGAGTTTCTCTCCTTGCTATTGATGAGGCCCATTGTATCTCTGAGTGGGGTCATGACTTTAGAGAAGAATATAAGCAATTGGATAAATTGCGCCAATTTCTTCCGAATGTGCCGTTTGTTG
CCTTGACAGCAACTGCAACAAAGAAGGTTGAACTCGATATTATACAATCTTTAAAGCTAAAGAATCCATATGTAAAGATTGGTTCTTTTGATCGACCAAATATTTACTATGGTGTGAAGACTTTGAATCGGACAAGTTTGTTTAGAGAAGAGATGGCTGGTGAAATTTCAAAATATGTGAAGGGTGGTGGATCAACTATT
GTGTATTGCACTACTATTAAAGATGCTGAACAGGTATCGATGTCTCTACAACAAGCAGGTGTTGAGGCTGGGGTTTATCATGGTCAAATGTCAAATGTTTCTCGAGAGGCTATACATAGATCTTTTATCAAAGATGAACTGCAGACTGTTGTGGCAACTGTTGCCTTTGGCATGGGCATTGACAAGCCCAACATAAGGTG
TGTAATACACTATGGATGTCCAAAAAGTCTAGAATCTTATTACCAGGAGAGCGGTAGATGTGGTCGGGATGGATTACCCTCGAAATGTTGGATGTACTACTCACGTGGTGATTTTATGAAAGCAGATTTTTACACATCAGATGCACGAACTGGAGCCAGACGGAAGTCTGTGGTGGAGTCCCTTATAGCAGCACAGAAAT
ATTGTACCCTTACAACATGTCGCAGAAAATATCTTTTGGAGTACTTTGGGGAGAATGTTGCGATTGACAATTGTGGTAATTGCGACAACTGTACAACTTCAGTATCTGTTGATCAACGAGACATGGCAAAGGAGGCTTACTTGTTGCTGACTTGTATACATTCTTGTGGAGGACGTTGGGGCCTTAATTTTCCGATCGAT
GTTCTTCGTGGATCACGTACAAAGAAAGTGACAGAGAATCATTTTGACAAGCTTCCTGTACATGGTTTGGGTAAAAACTATTCATCAAACTGGTGGAAGGCACTTGGTGACCAACTAATCAGCCTTGGTTATTTAGAAGAGACAGTATCTGACATTTTCAGGACTATCAGAGTTAGTCACCAAGGTCAGCGGTTCCTTCA
ATTGGCAAATCACATAAATCAGCCCCCACTTATATTACGACGAACTCCTGAGATGGTCAGTGAGGAAAACCGGGAGAATGGATTAAAGATTGGAAAAGTAGTAGATGGAGATATAGGGAATTTTCCTACTCTTCAAGATCAAGGGTTTTCAGAGATGGAAGTCAAACTCTACCATATGCTTTTAGACTTTAGGGCTGAGC
TTGCACAGAGGGAATCTACAGCTCCATATGCAGTTTGCAGTGAAGAGACACTCCAAAAGTTGGCAAAGATCCGACCGTCTACCAAGGCTAGGCTAGGAAACATTGATGGTGTTAATCAGCACCTCATAACAATGCACGGCTGTCGGATTCTTGAAACAATAAAATGCTTCTCGGAAGGTTTAGGGCTTCGCTTGGATGGA
GAATTGGCAGTGCAGCCAAATATTTCAAGGACATCTTTTATCAACATAGAATGTAAAGCAACCCCTGCAAAGGTGGAAGCTTGGAGGATGTGGCAGGAGAAAGGCCTTTCTTTTTCTGAAATTGCTAGCTTACCTGAGAGACCCGTTCCAATCAAAGAATCCACAGTTTTAGAGTATATTCTTGAAGTCGCAAGGGCAGG
ATTTGAGGTGAATTGGATGCGCTTTTGTAAAGAGGTCGGACTTACTTATAAAATTGCAAAGGAAATTCAAGTTGGCATCAGCAAGGCAGGTTCCAAAGAGAAGTTGAAGGCTATAAAAGAACAAGTGCCAGAATATGTGAGCTACACACAAATCAAAATAGTCTTGGTTCTGGAAGAGTGCGGTTTATCTATCGATGACA
TTGTAGAAATGCCATCATCAAAAGGTGAGGATGAGAGTTGCTTGAAGGATTCTCCTTCAGTATTGCAAGATGGTGCTCAAAGCATGACACAATTTGTAAAAGAAGATGATCTGTTAAAAGCATCAAATTCTTCCGAGGAAGATGCTTTTTCAAAACCTCCATGGATATTGAGTGATACAGGAGCAACGATACACAAACGG
AAAACTGAAGCGAAAAACAGTTTTTCTCGTTGTGAAAGCCCTACTAAAAAGCTCTGTTGTGAAAATGACTGGAAACCACAGTCAGATATTGAGCTGTTGCAAGCCACAGAAGATGCCTTGTTATCATGGCTAAGTGAACGTGATGGGGCTACTGTCTCCCAGATCTCTGAGCATTTTGCTGGATCGAGTAGGGATTTTGT
TCTCGAATTGTTATCAAGACTCGAGTGTGAGTTTTTAATATATAACAAAAGTAGTGTTTATAAGGTCATGTGAAAAGAATATGTAATATGTTAGACTGCTCTTTCTGGATGTAGAAGGAAAGGGTGAATTGTTTTGAGTGGTGCTGGCAGTGGTATGTGATGATATATCACTGCATACTTGTGTAAATTTAACAAGGACT
TCATGTGATTCAACAGTATGTATATACCTATTTGGAAGAGGTGCAGTATTACTGAGCTTAATGAAAAGGAATCAATATTGATTTTGACGTTATTGTCTTTTAGATGCAGTGTCCAATAATAAATATTGGACTTTTCAACATAGGTGGATGAACATGCATTTTTTTATTAGGTAATTTTAAATGAAGTAGAATACTGATAA
ATTCTTAAATGTGGATTCTACAGCTCTTCAATGTTCAGCTTGTATGATTTGTCTTGCGAAAGTATTGTGAAAAGTTAAATTTAAGAATTAATCTCATGCATTTGCCCT
>TRINITY_DN41209_c1_g2_i6 from sample A8 / Example unspliced isoform:GAAAAAGGAGCTTTCCTCATTCCCATGTTTAAGTTTTTTACAACACATTGAAGGAGAAATAAAGAGGTGGGAAGGCGCGCCATTATTGGGTGGCACACTAGAAGAAACAGGGAAAACATTCTGCGCCAGGCATTTAACATATTCCTTCCTCTCTCTGTGTCGGACTTTAACATTCCCAGTTCCAGCTTATTTTGAATATA
TGACGAACACTTTAAGCATGGAGGGCGCTCTCAAGAAATATTTTGGATTCTCATCTTTTAGACCGCTTCAAAAAGATTCCATAGGACAAATACTAAGAGGGAGAGATTGTCTCATTGTTATGGCTACTGGAAGTGGGAAATCTCTGTGTTATCAGATCCCTGCCTTAGTCACTCAAAAGACCGCTATAGTGATCAGCCCT
TTGATAAGCCTCATGCAGGATCAGGTAATGAGCTTGCAGCAACGAGGCATTAAAGCTCAATATTTGTGTAGTGCTCAAATGCACCGTACTGCAAGTTCAGATGCTGAGAAAGGGGAGTTTGACGTTCTGTACATGACCCCAGAGAGGGCTTGTTCTAGTTCTGACAGGTTTTGGTCAAATATGATGGAGAAGGGAGTTTC
TCTCCTTGCTATTGATGAGGCCCATTGTATCTCTGAGTGGGGTCATGACTTTAGAGAAGAATATAAGCAATTGGATAAATTGCGCCAATTTCTTCCGAATGTGCCGTTTGTTGCCTTGACAGCAACTGCAACAAAGAAGGTTGAACTCGATATTATACAATCTTTAAAGCTAAAGAATCCATATGTAAAGATTGGTTCTT
TTGATCGACCAAATATTTACTATGGTGTGAAGACTTTGAATCGGACAAGTTTGTTTAGAGAAGAGATGGCTGGTGAAATTTCAAAATATGTGAAGGGTGGTGGATCAACTATTGTGTATTGCACTACTATTAAAGATGCTGAACAGGTATCGATGTCTCTACAACAAGCAGGTGTTGAGGCTGGGGTTTATCATGGTCAA
ATGTCAAATGTTTCTCGAGAGGCTATACATAGATCTTTTATCAAAGATGAACTGCAGACTGTTGTGGCAACTGTTGCCTTTGGCATGGGCATTGACAAGCCCAACATAAGGTGTGTAATACACTATGGATGTCCAAAAAGTCTAGAATCTTATTACCAGGAGAGCGGTAGATGTGGTCGGGATGGATTACCCTCGAAATG
TTGGATGTACTACTCACGTGGTGATTTTATGAAAGCAGATTTTTACACATCAGATGCACGAACTGGAGCCAGACGGAAGTCTGTGGTGGAGTCCCTTATAGCAGCACAGAAATATTGTACCCTTACAACATGTCGCAGAAAATATCTTTTGGAGTACTTTGGGGAGAATGTTGCGATTGACAATTGTGGTAATTGCGACA
ACTGTACAACTTCAGTATCTGTTGATCAACGAGACATGGCAAAGGAGGCTTACTTGTTGCTGACTTGTATACATTCTTGTGGAGGACGTTGGGGCCTTAATTTTCCGATCGATGTTCTTCGTGGATCACGTACAAAGAAAGTGACAGAGAATCATTTTGACAAGCTTCCTGTACATGGTTTGGGTAAAAACTATTCATCA
AACTGGTGGAAGGCACTTGGTGACCAACTAATCAGCCTTGgtatctgcagtttcttttctgaaccttcatatatctatgctatttttttggcccctatatgagattttaataacagaaatgtgatcgtactatttcatgattcacctttattggtaattgagaaaaaatgtgtttctaacatatgatgtatggaataaca
acctgggggaagaattttactggttggaattttggcgtctaatgaattgctcgtgcaggttgatccatattctgtgacctaattgaggcttgagaaaccaataggtttttatagttattttgtaattgtatggtgcagGTTATTTAGAAGAGACAGTATCTGACATTTTCAGGACTATCAGAGTTAGTCACCAAGGTCAG
CGGTTCCTTCAATTGGCAAATCACATAAATCAGCCCCCACTTATATTACGACGAACTCCTGAGATGGTCAGTGAGGAAAACCGGGAGAATGGATTAAAGATTGGAAAAGTAGTAGATGGAGATATAGGGAATTTTCCTACTCTTCAAGATCAAGGGTTTTCAGAGATGGAAGTCAAACTCTACCATATGCTTTTAGACTT
TAGGGCTGAGCTTGCACAGAGGGAATCTACAGCTCCATATGCAGTTTGCAGTGAAGAGACACTCCAAAAGTTGGCAAAGATCCGACCGTCTACCAAGGCTAGGCTAGGAAACATTGATGGTGTTAATCAGCACCTCATAACAATGCACGGCTGTCGGATTCTTGAAACAATAAAATGCTTCTCGGAAGGTTTAGGGCTTC
GCTTGGATGGAGAATTGGCAGTGCAGCCAAATATTTCAAGGACATCTTTTATCAACATAGAATGTAAAGCAACCCCTGCAAAGGTGGAAGCTTGGAGGATGTGGCAGGAGAAAGGCCTTTCTTTTTCTGAAATTGCTAGCTTACCTGAGAGACCCGTTCCAATCAAAGAATCCACAGTTTTAGAGTATATTCTTGAAGTC
GCAAGGGCAGGATTTGAGGTGAATTGGATGCGCTTTTGTAAAGAGGTCGGACTTACTTATAAAATTGCAAAGGAAATTCAAGTTGGCATCAGCAAGGCAGGTTCCAAAGAGAAGTTGAAGGCTATAAAAGAACAAGTGCCAGAATATGTGAGCTACACACAAATCAAAATAGTCTTGGTTCTGGAAGAGTGCGGTTTATC
TATCGATGACATTGTAGAAATGCCATCATCAAAAGGTGAGGATGAGAGTTGCTTGAAGGATTCTCCTTCAGTATTGCAAGATGGTGCTCAAAGCATGACACAATTTGTAAAAGAAGATGATCTGTTAAAAGCATCAAATTCTTCCGAGGAAGATGCTTTTTCAAAACCTCCATGGATATTGAGTGATACAGGAGCAACGA
TACACAAACGGAAAACTGAAGCGAAAAACAGTTTTTCTCGTTGTGAAAGCCCTACTAAAAAGCTCTGTTGTGAAAATGACTGGAAACCACAGTCAGATATTGAGCTGTTGCAAGCCACAGAAGATGCCTTGTTATCATGGCTAAGTGAACGTGATGGGGCTACTGTCTCCCAGATCTCTGAGCATTTTGCTGGATCGAGT
AGGGATTTTGTTCTCGAATTGTTATCAAGACTCGAGTGTGAGTTTTTAATATATAACAAAAGTAGTGTTTATAAGGTCATGTGAAAAGAATATGTAATATGTTAGACTGCTCTTTCTGGATGTAGAAGGAAAGGGTGAATTGTTTTGAGTGGTGCTGGCAGTGGTATGTGATGATATATCACTGCATACTTGTGTAAATT
TAACAAGGACTTCATGTGATTCAACAGTATGTATATACCTATTTGGAAGAGGTGCAGTATTACTGAGCTTAATGAAAAGGAATCAATATTGATTTTGACGTTATTGTCTTTTAGATGCAGTGTCCAATAATAAATATTGGACTTTTCAACATAGGTGGATGAACATGCATTTTTTTATTAGGTAATTTTAAATGAAGTAG
AATACTGATAAATTCTTAAATGTGGATTCTACAGCTCTTCAATGTTCAGCTTGTATGATTTGTCTTGCGAAAGTATTGTGAAAAGTTAAATTTAAGAATTAATCTCATGCATTTGCCCT
Intron 3 GTGTGTTATT ... TTCATCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.92 | 25.5 | 0 | 14 |
| A2 | 38.1 | 13 | 3 | 8 |
| A3 | 50.89 | 11.6 | 1 | 12 |
| A4 | 33.9 | 21.5 | 1.5 | 11 |
| A5 | 24.51 | 15.5 | 0 | 5 |
| A6 | 17.62 | 10.1 | 0 | 2 |
| A7 | 31.47 | 26.3 | 4.5 | 12 |
| A8 | 12.69 | 27.9 | 3 | 4 |
| A9 | 23.63 | 42.1 | 2.5 | 13 |
| A10 | 30.82 | 33.9 | 0 | 15 |
>TRINITY_DN110745_c1_g1_i5 from sample A2 / Example spliced isoformCATAGACCTCAAATTATGGTGCTTAAAACTCGCAAAGGGTCTTTTCTCTTTAAAGGGCGGAGAAAAATGGGCTTTCCTCATTCCCATGTTTAAGTTTTTTCCAACACATCGAAGGAGAAATAAAGAGGCGGGAAGGCGCGCCATTATTGGGTGGCACACCAGAAGAAACAGGGAAAACATTCTGCGCCAGGCATTTAACA
TATTCCTTCCTCTCTCTGTGTCGGACTTTAACATTCCCAGTTCCAGCTTATTTTGAATATATGACGAACACTTTAAGCATGGAGGGCGCTCTCAAGAAATATTTTGGATTCTCATCTTTTAGACCGCTTCAAAAAGATTCCATAGGACAAATACTAAGAGGGAGAGATTGTCTCATTGTTATGGCTACTGGAAGTGGGAA
ATCTCTGTGTTATCAGATCCCTGCCTTAGTCACTCAAAAGACCGCTATAGTGATCAGCCCTTTGATAAGCCTCATGCAGGATCAGGTAATGAGCTTGCAGCAACGAGGCATTAAAGCTCAATATTTGTGTAGTGCTCAAATGCACCGTACTGCAAGTTCAGATGCTGAGAAAGGGGAGTTTGACGTTCTGTACATGACCC
CAGAGAGGGCTTGTTCTAGTTCTGACAGGTTTTGGTCAAATATGATGGAGAAGGGAGTTTCTCTCCTTGCTATTGATGAGGCCCATTGTATCTCTGAGTGGGGTCATGACTTTAGAGAAGAATATAAGCAATTGGATAAATTGCGCCAATTTCTTCCGAATGTGCCGTTTGTTGCCTTGACAGCAACTGCAACAAAGAAG
GTTGAACTCGATATTATACAATCTTTAAAGCTAAAGAATCCATATGTAAAGATTGGTTCTTTTGATCGACCAAATATTTACTATGGTGTGAAGACTTTGAATCGGACAAGTTTGTTTAGAGAAGAGATGGCTGGTGAAATTTCAAAATATGTGAAGGGTGGTGGATCAACTATTGTGTATTGCACTACTATTAAAGATGC
TGAACAGGTATCGATGTCTCTACAACAAGCAGGTGTTGAGGCTGGGGTTTATCATGGTCAAATGTCAAATGTTTCTCGAGAGGCTATACATAGATCTTTTATCAAAGATGAACTGCAGACTGTTGTGGCAACTGTTGCCTTTGGCATGGGCATTGACAAGCCCAACATAAGGTGTGTAATACACTATGGATGTCCAAAAA
GTCTAGAATCTTATTACCAGGAGAGCGGTAGATGTGGTCGGGATGGATTACCCTCGAAATGTTGGATGTACTACTCACGTGGTGATTTTATGAAAGCAGATTTTTACACATCAGATGCACGAACTGGAGCCAGACGGAAGTCTGTGGTGGAGTCCCTTATAGCAGCACAGAAATATTGTACCCTTACAACATGTCGCAGA
AAATATCTTTTGGAGTACTTTGGGGAGAATGTTGCGATTGACAATTGTGGTAATTGCGACAACTGTACAACTTCAGTATCTGTTGATCAACGAGACATGGCAAAGGAGGCTTACTTGTTGCTGACTTGTATACATTCTTGTGGAGGACGTTGGGGCCTTAATTTTCCGATCGATGTTCTTCGTGGATCACGTACAAAGAA
AGTGACAGAGAATCATTTTGACAAGCTTCCTGTACATGGTTTGGGTAAAAACTATTCATCAAACTGGTGGAAGGCACTTGGTGACCAACTAATCAGCCTTGGTTATTTAGAAGAGACAGTATCTGACATTTTCAGGACTATCAGAGTTAGTCACCAAGGTCAGCGGTTCCTTCAATTGGCAAATCACATAAATCAGCCCC
CACTTATATTACGACGAACTCCTGAGATGGTCAGTGAGGAAAACCGGGAGAATGGATTAAAGATTGGAAAAGTAGTAGATGGAGATATAGGGAATTTTCCTACTCTTCAAGATCAAGGGTTTTCAGAGATGGAAGTCAAACTCTACCATATGCTTTTAGACTTTAGGGCTGAGCTTGCACAGAGGGAATCTACAGCTCCA
TATGCAGTTTGCAGTGAAGAGACACTCCAAAAGTTGGCAAAGATCCGACCGTCTACCAAGGCTAGGCTAGGAAACATTGATGGTGTTAATCAGCACCTCATAACAATGCACGGCTGTCGGATTCTTGAAACAATAAAATGCTTCTCGGAAGGTTTAGGGCTTCGCTTGGATGGAGAATTGGCAGTGCAGCCAAATATTTC
AAGGACATCTTTTATCAACATAGAATGTAAAGCAACCCCTGCAAAGGTGGAAGCTTGGAGGATGTGGCAGGAGAAAGGCCTTTCTTTTTCTGAAATTGCTAGCTTACCTGAGAGACCCGTTCCAATCAAAGAATCCACAGTTTTAGAGTATATTCTTGAAGTCGCAAGGGCAGGATTTGAGGTGAATTGGATGCGCTTTT
GTAAAGAGGTCGGACTTACTTATAAAATTGCAAAGGAAATTCAAGTTGGCATCAGCAAGGCAGGTTCCAAAGAGAAGTTGAAGGCTATAAAAGAACAAGTGCCAGAATATGTGAGCTACACACAAATCAAAATAGTCTTGGTTCTGGAAGAGTGCGGTTTATCTATCGATGACATTGTAGAAATGCCATCATCAAAAGGT
GAGGATGAGAGTTGCTTGAAGGATTCTCCTTCAGTATTGCAAGATGGTGCTCAAAGCATGACACAATTTGTAAAAGAAGATGATCTGTTAAAAGCATCAAATTCTTCCGAGGAAGATGCTTTTTCAAAACCTCCATGGATATTGAGTGATACAGGAGCAACGATACACAAACGGAAAACTGAAGCGAAAAACAGTTTTTC
TCGTTGTGAAAGCCCTACTAAAAAGCTCTGTTGTGAAAATGACTGGAAACCACAGTCAGATATTGAGCTGTTGCAAGCCACAGAAGATGCCTTGTTATCATGGCTAAGTGAACGTGATGGGGCTACTGTCTCCCAGATCTCTGAGCATTTTGCTGGATCGAGTAGGGATTTTGTTCTCGAATTGTTATCAAGACTCGAGT
GTGAGTTTTTAATATATAACAAAAGTAGTGTTTATAAGGTCATGTGAAAAGAATATGTAATATGTTAGACTGCTCTTTCTGGATGTAGAAGGAAAGGGTGAATTGTTTTGAGTGGTGCTGGCAGTGGTATGTGATGATATATCACTGCATACTTGTGTAAATTTAACAAGGACTTCATGTGATTCAACAGTATGTATATA
CCTATTTGGAAGAGGTGCAGTATTACTGAGCTTAATGAAAAGGAATCAATATTGATTTTGAC
>TRINITY_DN110745_c1_g1_i1 from sample A2 / Example unspliced isoform:TTGGAATTTTGGCGTCTAATGAATTGCTCGTGCAGGTTGATCCATATTCTGTGACCTAATTGAGGCTTGAGAAACCAATAGGTTTTTATAGTTATTTTGTAATTGTATGGTGCAGGTTATTTAGAAGAGACAGTATCTGACATTTTCAGGACTATCAGgtgtgttattcattaggaaaagaagttccaattgcctttagt
ccaaaacactgttggtggtaatctgttaattttgttttgacattgtttatttttcatactctgatggattatggtgtttctattcatcgcagAGTTAGTCACCAAGGTCAGCGGTTCCTTCAATTGGCAAATCACATAAATCAGCCCCCACTTATATTACGACGAACTCCTGAGATGGTCAGTGAGGAAAACCGGGAGAA
TGGATTAAAGATTGGAAAAGTAGTAGATGGAGATATAGGGAATTTTCCTACTCTTCAAGATCAAGGGTTTTCAGAG