sp|P93042|RHD3_ARATH ----> Protein ROOT HAIR DEFECTIVE 3
Intron 1 GTATGTTTCA ... TCTTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.24 | 38 | 80 | 128 |
| A2 | 73.94 | 37 | 86 | 124 |
| A3 | 69.03 | 59 | 107 | 156 |
| A4 | 68.85 | 38 | 68 | 100 |
| A5 | 77.38 | 25 | 60 | 111 |
| A6 | 81.82 | 1 | 4 | 5 |
| A7 | 80 | 1 | 3 | 5 |
| A8 | 100 | 0 | 0 | 5 |
| A9 | 76.92 | 3 | 3 | 17 |
| A10 | 68.42 | 3 | 5 | 8 |
>TRINITY_DN110315_c0_g1_i6 from sample A4 / Example spliced isoformAAATAATCTAAGCCTCATCAATCTTCTTATCAATCTTCTTAAACACAAGCAATTTGAAATTACCACACATTTTCACTCCACAAAGCTTCTTCTTAGACACACAACCAATCAATTCGAGCTTTCAAGACAATGACATTTCAAAGTAATCCATATTCTTTGTTTTATAGTGCGAATGTTTTTTCAAACGAAAAAGTTTATTA
AATTGTAGAGCAAGGAACGCTGCAGATAAATCGAAAACACAAGGGATCCAATAAATTGCAGAAGAAGGAACCTGCGAGGGAATCGAAGAGACTGGCGGTACGGAAAAACTTATTGCTTTCTAAGATCCGCTTCAGCGGACAGGTGGATGCCAAAAACTGTACCCAAAAGTCTTTCACATCTATATGAACCGTCCCCGATC
AGTGGAAACAGCTATGTTCTGTGTTAGAAATGCGCGGCAACTTTGTGTTAGACCGAACAATTCTGTATTTCGTCTTCCCTGCTCGGCTTCATCATGGCGTCTTTGAGGTTTTGAGGTGTTGGTAATGTGTTTTGTTTCTGACAGACAAGAGCTTAGTTTTGTGGAGAAGGTCCAACTGCCGCAGGACCAGATTTTGCTTC
TTTGCAATGAGCTTGTTCCCAATTCTGCAACAACCATGGGTACTCAATTTACCCAAATGCGCATAAATTTCAATGCATTAAATCAGCGATGCTTGCCTGTGGTTGGATTTTACGGAAGCAAGCAAATGATGGCAGAGGCTTTCAGGAAGCAAGGCTTGTTAGGAGAAGAGGAGGTTCTTGATCAGTTGGAACCAGGACTG
TATGCCGTAGTTCGAGAATCAGCCGTTTTTGTATTCTACTGGCATGAAGGTGAAAATCTGAAAGAAGCCTCGAGGAAGGATGTTTCTTGCAACTTTATTCGATATCTTGTAGAGCTCTCGGATTATCTGCATGTGTGTGTTCAAGGCTACTATCCCTTTGAAGCTTCAGCTTCTTTGGGTAGAACTGTTTCTTCCAAAGG
GAGACGCACCAAGAAGCTTCAAATAAACCATGTGCAAAACTCTGAGAACGATGTCAAGTTTTCTGATGGATTTAATGTCGCCATTGATAGGCAATCCAAGAAATCGACGCCTTCTGTGAACGCTCAAGCATTAGGTAATGTTGTATTCTGCGATGGGTATAATCATTGTGCTTTCTTGACTGCAGAATACAAGCCTCCAG
GAGTTTCTAAAAGGCTAGATGGGAGAACTCTGAAAGGAAGTTATCAACTTCGAAGTGAAATCGACAGCTGGTCGAAGGATAGCGATTTGAACTACTGCAGAATGAGCCATAAGCATTTCGTCTCTCTGCTGCAATTTGGTAATATTTCAAGATATAATGAATACTGCGATTTCATGAAAACTCTTAGCATTTCCATCGCC
GAAGCCCGAGGAGGCATTTCTGCGGAGTCCTCCATGGAAGGAATTCGAGAAAGTGTCGTGGCTTCCTTTTTGAAAATTCTGCCAGAATACTTTGGTGGAGCGCAATTTCTTGATGGGGCCTCCCCTGGGACTTCGTCTTCACAAAACCATCAAGAACTACGTGGCTCTGGCTTTGTTGATAGGTTTGATCAACTGCATCA
AGAGTTGAGTAAGATCTTAGCAGGCAGAGATTGTGATAAGAAGCTCATTTACTACGGATCTTTGGTCAAGTTTATTGATCCCAGTGATGATGATGGTGGTTCTTTTAATTTTAGGATTGAAGGGCCCCAGAAGCAAACTGAGAATCAAACTGGACCTGTTAGATATGGACGAGATATAGTTTTGAAATGTATAAATCCAA
AGAGGGACTTGAAGGCGACGATACTGCAATCAAACGAAGAAACCCTTCAAGTGCCATTTCCATTTTCAGGTGACCGGGTAATCTTGAAAATGAAACGCCAATGGCACTTAGAAGGAGCCCTTGAAGTTGTCGAAACCAGTTCCGTTGCTCTACAGAATTGGGTTAAGTCTCTGATTCCCAAGAAATTGCAGTGTTTAGGT
AGAAACATCGGTTTTGTAGCATTGCTGGTAAACAGAGGGGGCAGTGACAAACAATTGCATTCAGTTGGAAGACCTCTCATTGAAAAGATTTTGACAACAGAGAATTTGAAGAGTATTGAGCGCGACCTGCCAGATGAGATTGGCAAGCTTTTTAAACAATTCGAGTCAAAAGGTGCACCTGCTGTTGATGAAGCGATGTG
GGTCAAGCTCCTATCTAATAAACAGGTCAGACCAGTAATTTCAATTCTTTACAAGACATCCAGAGAAGAATTCGTACAAAATCTCGAATCTATGGTGAAGAAAGAATTCTTGAGTGCTTTTCAAAAGAAGGTTGAATCTCAAGGCACAGAAACCAAAAATCTTTTACAGCAGAACCGAAATTCAGAAGAAGATAAATTCC
TATCGGCAATGAAGCTCGAGATGTCAGTGATGACAGACAAACCGGTATGCAGGTTCATCGAGGCTTTTGAAGCCCAGCGTTCTTGGTTTCCCTACCCGTCGGAGCAGCTAAATCTGAAGGTTTCAATTGAAAGACATGAGAAGTCTAGCATTGCATGGAGGATTTCTGAGCTGATGCCAAGGAAAAATGATTTGGAGGAG
TTAAGCCGAAACAGTGAGTATCGGATCACTCCAACATGTACTGATCAATTTGAGTTGGTCACCCTCGACCCGGAGGTAGGACGCATTCTAAAAGTGGTGGTCCTTAAGTCTGGTCACTTGTTGGCGTTCATTGAGACTTTGGTTGATCCCTGCCTGTATGTTTATAGTTGCTCTCGCATGGGTTTAAGCCTAGATGGCAT
AAATCCTATACGAAAATTCAGGAGGGGCTATGATTTATTGTCTGTGGACGAATGTACTCGATTTGTTGCCTTATATGATAAGCTAAGCTGTAAGGTTGCAGTACACAGGTTTGATGAATCTTTCCGCAACCTGGATCCTACCGGGGTAGAAGTGGGTCTCCATAAATTTACTGGCATTGGAATCTTAACATGGATGCATC
TGATACCGGGGAAAAGGGAATTGGTCTTGATTGACGACACAAACAAGGTCAGGGTGGTGGAACTCCATATGCAGCCGATGATGAAACCCAGGCCTCTAACTCTTCCTTCACCTGTTTCAGTAGCTCTTGTTTCGGTGGATGGATCATTTTTATTTGTCTTCCGCAAGTCAGACAACAATGATGAAGTGCTAGAAGCTAGC
AAGGATATGATACAGGTGGCTGGAAAAGCTATCGATTCTTCTGTCACGGTGGATATATATGTCTTGGCCGATGTCATGAGCCTCTTGAGGACCATTCCCTTGAAAAAAAGCATCAGAGATTTGGGAGAGCTTCAAGTGAAGATTGTGAATTTTGGGTCACAGAGTCATCTTGTTTTCTTCAATGCATCAGCTCATCGTAA
CATTTATTCCTGCATCTTGAAAACTGTTTCAGCAAAGGAAGTTGTCCAATTACAAACAATACAAAGTGCAGAAGGCAAGGTAGCTCAAGCGCCTGAAGAAAGAAGAATTTCTGGATCTTGCCCACCATTGGAGTATATATACCATATTTTTGACAAGTTTGCAACCAGCCCTGCTCTGTTCAGCGAAGATAAGAAGGATA
TAACTTTCAATGTACTATTAAGCACCAAAGACACTGATCAAAAATGTAATGAGCAGGCATGTAAGAAAGTCTTGAGAACTCTTCTTGAACAACTGGAGAAGGAAAAAGGTAAAGATTTCTCAAATATAGAGATTCAAATTAATGTAAAAAAATTTGAATCATGGATATCTGGAGGCTCGGTTGATCCAACTGGCTTGGCA
ACTATGGCTATGGGAACATGGATTCGCAGGCTTGCTTGCCTTGTTCCCATCCAAATAGCCCGAGCAGAAAACAACGGACTTCTTGCTCTCAAGGATGGGTTTCAGATACCACCGGAACTGAGTTATGCAGACAGCTTATCTCTGACCAATTTGATCACTTTTGGCATTTATGACACAGTTCTTAGAAACTGGGAGGGTGA
GATCATGGTGATATCATCCATGGGAAAACAAAGCAGCGGAAAATCTTATTTGCTGAATCACTTGTCAGGGTCTCTTTTGGATGTGGCAGGTGGAAGGTGTACCTTGTCAGGGCGTGGGAAAATCTTATTTGCTGAATCACTTCGGATAGGATTCTTTGCCTTATTTTCCATTATTTTAGCTGAATAATGACTGTTTTCTG
AGATTCAGGCTTCAAGGGAAATGGTTGTATTGAATTTATGCCAAGGGCAAAAAGATTTTTCTCACTTCATTGCTAAAACATTACTCACGCTCTGCTTCATTTCACTATTCCCTCTTTCCAATTCCCTAATTGAGATAGTTGCAAAAGATCAAGTACAGCAATAACTCGGTGTTTGAAAAATAGTAATCAGGATGATGGAG
TGTGGATGACTGCCAGGGCAGCCGAAAAACGCATCTATGTCGTGCTGGACTTTGAAGGGTTGGGTAGTTTTGAGCGGACGGAGCAAGAGGATATGCTACTATCTGTTCTTAATGCAGCAATAAGCAACTTAACAGTCTTCAACAAGAAGGACTTCCATTTAGACAAAGAGACAGAGATAGTCTTCGAGCGCTTTCAGAAT
GGGATCAGCCTTGTTAAGCAGGACAAGGACAAAAAACTCTTCAAGGGAATTTTCTATATTGCCATAAAGGACGTTGACAGTTCGGATGTGGACGATTTAAAACATGAATTCGAAGAAAAAATCTCCAAAATTTGTTCCAGAACTCATGAAAACTTTCTCTCAAAAATGTATGGTGGAAAGGTTGAAATAGCAGCAATGCC
TCCATATAATCGACCTGACTACCAGGATAGCTTAAGGGACATCGCAAGTACATTAGAAGAGATGAAATCATGCTATCATAACGGTACCGCTTTCTTGAATGATGTGAAGCTAGTGATTGCTCAGATTGCAGCAAAGGACTGGACGTCTGTAGACAGTAAACGAGTAGCCTTGAGGGTCAACATATTAAGGAGAAATCTAA
AGTCTGCTATAGATGGAGGATGCCTCTCTGCTACAGGTGAAATCCAAATGCTAGTTAATTTGGATACGCAGGAAGAAGTTTTGGATTTTCCGGTTGCTGTTGAGGAGGTCATGTTTGATTTCCCCGATACTGGATTAGAATTGGCATCTTCAGTAGAACCAACAGCAGTTGCTGGAAGAATTTTATCTGAGCTCAGGTCA
AGATTAGAAAGTGTTGTGCCGAGAAAAGGAACTGATGGTGAATGGTGGCACTCTGTTTTTGAAAGCTTTTTGGGTGCATTGGCCGATCGAAGACGAAAGCGAGTTGAACAGTGGTTGAATTCTAACACAGTGGATTTTTCCAGTTCTGACGAGGTGCATAAATTACAGTTAGAGGCTGCTGCGGGTATTGCAGAAATGAA
GCAAAGGCTATGTGTTTGCGGATGTAAATGCTTTAAATGCTTTTGGAGATGTGTGCTTGAAAAAGGCCATGTTTCCTCTCATTCTTGCATGGGTAGCCATGTATGTTCAGAAAAATGCACCTTCTGCACCAAGGAGGAGGAAGAAGAGAATTTTGTTGAGGATTGCAAAAATATGGCAGGGCATGAAGGCCCCCATGACT
GTAAAATGAAAAACCACACCTGCGGTGAAATTTGTGACTTGTTTAAGAAGTCATCCAACTGTAATAGGTCTTGTTCTATAAAGCTTGGGCATGAGGGTCCACACAAGTGCAATTCTCCCCAACATATGTGCAAGAAAGGATGTTCTCTTCCTACTTGCCAAAATCCGTGTGTTGTGCCAATTGAGTTTGGGGATCATGAT
AGGCATGCTTGCCATGAAAGATACTGTCAAACTCCATGCCTCATGAAGGGCTGTACAAGGACATGTGGTCACAAGGACCATTTTCATGACCTCAATCGTGATGCCGAACATCTATGTGGGAATGAGCATGTGTGCCCTGACAAATGCGAGGTGCCTGGAATATGTGAGATTTTTACCGAATTAGTTCGCCAAACAAGACA
GTTCCAAGGGCGCAGAGGGTCTTTCGAGTATGAGCATGTATCAGAGCAGAACGGTCTACGAAAGGATTGTTGTGTTCCTGTACCAGCTTTTAAGAGGACCCATGAAGGACCCCATGTTCATACAACGAATGAGGATGCTATTCACTATTGTGAGACAAGATGCCATTCTTGTGGCTATTTTTGCCAACTTCCGATCGATC
ACCCTGGTTTGCATAACACAGTGCATGGCAATATGAGAAATGTTAAATTCATTTCAGAAACAGAGGAGATTGATATTGATGACAGAAAGTACGCATGGGGAGAAACAGGGCTGGCAGAAATGTGCAATATGCATTGTAAAAAACAAGGGAGGGGCCACATTCATTTGGTTCCATGCCCAGAAAACTGCACCAGCAAGCTA
TATGATGGCTCCAGGCACGAAACTAGGAAATATGGTCCGGACCTGGATGTACCCAAGGATGAGATGACTCATGAGACTTATTGGAAATATATTAGATTCGTTGATCCCTGCTCTGAGGAAGAGCAGAACGTGTTTGGCCTCTGCAATCACTATTGCAGATCGGAGGAGCATGAAGAGCTCTCAGACCAAAAGGCCGGCGC
AGCTCAGAAATCTTATTGTACCGAGAAACTTTGGCATGCTCCTATCAAAATAACTGGATTGAATGTCAGTTCTGCAGGCTATATAACAGATGATGGGCATCATTTTGGCTGTGATCATTCCAAGAATGTTCCTCATCATGTCATTTTTGTCATTGATAAATCAGGGTCCATGACCAGTACAGATATTAAGCCAACAATGT
CGATGTTTTCTCCTTCTCATGATTTTAGGCTTGGTTGTGTGTTTGAGGCTATTATAAGGTTTATAAGAACTCGCCTTAGGACTGTATCTGATGATTCGGTGTCAGTGGTTCTCTTCGACTGCAGCGCAGTTATTGCTGTAGAGATGAAAGAGATGAGGGAGGAAGTTGTTAATTCGCTTCTTGCTTATGATGCAGATGGA
GGAACTACTTATTCATCTGGGTTGGAATTGGCTGAAAGGGTGATGATCAAAGCCTCAAGAGATCCGACAACTGATCAGAAAAGACCAATGATTGTGTTTTTGAGTGATGGAGGAAATAATGGGGGAGGGGATCCTCTATATTATGTGGACAGAATGAAACAACAAGAGCCGAGGATGATTCTTCACACTATAATGTTTGG
AAACGACCCCACATTCAAAATTCTCAGAGATATGGCCAACATTGGCAACGGAACATTTCAGCTTAGTCTTGATGAAGTGCAATTAGCAAAAAGCTTTGAAGACCTAGCCACAAGTCTTAAGCCCAAAGTTGCAGCCTTAATGTAGGGATGTAGCAGGTATTTTAGACTAATCTTCCCTTACAGAAATCCTACTGGACATG
CAGACTTTTGTTTTTTTGGTTAGACATTTGTATTTTTGTTTTGCTAAATCTACGCCCTTATGTAACATATATGTTTTATTTAATTAGTGTAATGCAGTATGGTAGTTCAGTTTTTTTGTATGAATGAATACAGAACCTACGGCAGCTTATGAGGAGCCATCTGAATTATGTAGCCAGATCTGAAGTTCGCTAAAATACAC
ATATTTGAATCATGTATATGATAGCTCCAGATTTGTGAATGAATATAGAATCTTCAGCAGCTTATGAGATAGAATGTAACTATGCAAGTCATGTAAACCATATCCGAAGTTCACCAAAATACACATATTTGCTTCAATGAATATTTCATAGAATTGTTTTTGCAGATTTTCCAGTTGTGAGCTTCTTGTTCACTGAAGTT
GCATTTGTTATTAATAGTTAACATATTAGATATACATTATTTGAAA
>TRINITY_DN110315_c0_g1_i2 from sample A4 / Example unspliced isoform:AAATAATCTAAGCCTCATCAATCTTCTTATCAATCTTCTTAAACACAAGCAATTTGAAATTACCACACATTTTCACTCCACAAAGCTTCTTCTTAGACACACAACCAATCAATTCGAGCTTTCAAGACAATGACATTTCAAAGTAATCCATATTCTTTGTTTTATAGTGCGAATGTTTTTTCAAACGAAAAAGTTTATTA
AATTGTAGAGCAAGGAACGCTGCAGATAAATCGAAAACACAAGGGATCCAATAAATTGCAGAAGAAGGAACCTGCGAGGGAATCGAAGAGACTGGCGGTACGGAAAAACTTATTGCTTTCTAAGATCCGCTTCAGCGGACAGGTGGATGCCAAAAACTGTACCCAAAAGTCTTTCACATCTATATGAACCGTCCCCGATC
AGTGGAAACAGCTATGTTCTGTGTTAGAAATGCGCGGCAACTTTGTGTTAGACCGAACAATTCTGTATTTCGTCTTCCCTGCTCGGCTTCATCATGGCGTCTTTGAGGTTTTGAGGTGTTGgtatgtttcaattttgactgaagttagtttttgtctttgcctgatagcaatattttaaggatctgcattgagattcgct
cctgacggtcgagggtcgtattgtttgattgaaattatggaagaagaaagagagatggtttctgttgattcaatggattatttgatggattcaacccctgtgtctaacagtttacctcttttcaagGTAATGTGTTTTGTTTCTGACAGACAAGAGCTTAGTTTTGTGGAGAAGGTCCAACTGCCGCAGGACCAGATTTT
GCTTCTTTGCAATGAGCTTGTTCCCAATTCTGCAACAACCATGGGTACTCAATTTACCCAAATGCGCATAAATTTCAATGCATTAAATCAGCGATGCTTGCCTGTGGTTGGATTTTACGGAAGCAAGCAAATGATGGCAGAGGCTTTCAGGAAGCAAGGCTTGTTAGGAGAAGAGGAGGTTCTTGATCAGTTGGAACCAG
GACTGTATGCCGTAGTTCGAGAATCAGCCGTTTTTGTATTCTACTGGCATGAAGGTGAAAATCTGAAAGAAGCCTCGAGGAAGGATGTTTCTTGCAACTTTATTCGATATCTTGTAGAGCTCTCGGATTATCTGCATGTGTGTGTTCAAGGCTACTATCCCTTTGAAGCTTCAGCTTCTTTGGGTAGAACTGTTTCTTCC
AAAGGGAGACGCACCAAGAAGCTTCAAATAAACCATGTGCAAAACTCTGAGAACGATGTCAAGTTTTCTGATGGATTTAATGTCGCCATTGATAGGCAATCCAAGAAATCGACGCCTTCTGTGAACGCTCAAGCATTAGGTAATGTTGTATTCTGCGATGGGTATAATCATTGTGCTTTCTTGACTGCAGAATACAAGCC
TCCAGGAGTTTCTAAAAGGCTAGATGGGAGAACTCTGAAAGGAAGTTATCAACTTCGAAGTGAAATCGACAGCTGGTCGAAGGATAGCGATTTGAACTACTGCAGAATGAGCCATAAGCATTTCGTCTCTCTGCTGCAATTTGGTAATATTTCAAGATATAATGAATACTGCGATTTCATGAAAACTCTTAGCATTTCCA
TCGCCGAAGCCCGAGGAGGCATTTCTGCGGAGTCCTCCATGGAAGGAATTCGAGAAAGTGTCGTGGCTTCCTTTTTGAAAATTCTGCCAGAATACTTTGGTGGAGCGCAATTTCTTGATGGGGCCTCCCCTGGGACTTCGTCTTCACAAAACCATCAAGAACTACGTGGCTCTGGCTTTGTTGATAGGTTTGATCAACTG
CATCAAGAGTTGAGTAAGATCTTAGCAGGCAGAGATTGTGATAAGAAGCTCATTTACTACGGATCTTTGGTCAAGTTTATTGATCCCAGTGATGATGATGGTGGTTCTTTTAATTTTAGGATTGAAGGGCCCCAGAAGCAAACTGAGAATCAAACTGGACCTGTTAGATATGGACGAGATATAGTTTTGAAATGTATAAA
TCCAAAGAGGGACTTGAAGGCGACGATACTGCAATCAAACGAAGAAACCCTTCAAGTGCCATTTCCATTTTCAGGTGACCGGGTAATCTTGAAAATGAAACGCCAATGGCACTTAGAAGGAGCCCTTGAAGTTGTCGAAACCAGTTCCGTTGCTCTACAGAATTGGGTTAAGTCTCTGATTCCCAAGAAATTGCAGTGTT
TAGGTAGAAACATCGGTTTTGTAGCATTGCTGGTAAACAGAGGGGGCAGTGACAAACAATTGCATTCAGTTGGAAGACCTCTCATTGAAAAGATTTTGACAACAGAGAATTTGAAGAGTATTGAGCGCGACCTGCCAGATGAGATTGGCAAGCTTTTTAAACAATTCGAGTCAAAAGGTGCACCTGCTGTTGATGAAGCG
ATGTGGGTCAAGCTCCTATCTAATAAACAGGTCAGACCAGTAATTTCAATTCTTTACAAGACATCCAGAGAAGAATTCGTACAAAATCTCGAATCTATGGTGAAGAAAGAATTCTTGAGTGCTTTTCAAAAGAAGGTTGAATCTCAAGGCACAGAAACCAAAAATCTTTTACAGCAGAACCGAAATTCAGAAGAAGATAA
ATTCCTATCGGCAATGAAGCTCGAGATGTCAGTGATGACAGACAAACCGGTATGCAGGTTCATCGAGGCTTTTGAAGCCCAGCGTTCTTGGTTTCCCTACCCGTCGGAGCAGCTAAATCTGAAGGTTTCAATTGAAAGACATGAGAAGTCTAGCATTGCATGGAGGATTTCTGAGCTGATGCCAAGGAAAAATGATTTGG
AGGAGTTAAGCCGAAACAGTGAGTATCGGATCACTCCAACATGTACTGATCAATTTGAGTTGGTCACCCTCGACCCGGAGGTAGGACGCATTCTAAAAGTGGTGGTCCTTAAGTCTGGTCACTTGTTGGCGTTCATTGAGACTTTGGTTGATCCCTGCCTGTATGTTTATAGTTGCTCTCGCATGGGTTTAAGCCTAGAT
GGCATAAATCCTATACGAAAATTCAGGAGGGGCTATGATTTATTGTCTGTGGACGAATGTACTCGATTTGTTGCCTTATATGATAAGCTAAGCTGTAAGGTTGCAGTACACAGGTTTGATGAATCTTTCCGCAACCTGGATCCTACCGGGGTAGAAGTGGGTCTCCATAAATTTACTGGCATTGGAATCTTAACATGGAT
GCATCTGATACCGGGGAAAAGGGAATTGGTCTTGATTGACGACACAAACAAGGTCAGGGTGGTGGAACTCCATATGCAGCCGATGATGAAACCCAGGCCTCTAACTCTTCCTTCACCTGTTTCAGTAGCTCTTGTTTCGGTGGATGGATCATTTTTATTTGTCTTCCGCAAGTCAGACAACAATGATGAAGTGCTAGAAG
CTAGCAAGGATATGATACAGGTGGCTGGAAAAGCTATCGATTCTTCTGTCACGGTGGATATATATGTCTTGGCCGATGTCATGAGCCTCTTGAGGACCATTCCCTTGAAAAAAAGCATCAGAGATTTGGGAGAGCTTCAAGTGAAGATTGTGAATTTTGGGTCACAGAGTCATCTTGTTTTCTTCAATGCATCAGCTCAT
CGTAACATTTATTCCTGCATCTTGAAAACTGTTTCAGCAAAGGAAGTTGTCCAATTACAAACAATACAAAGTGCAGAAGGCAAGGTAGCTCAAGCGCCTGAAGAAAGAAGAATTTCTGGATCTTGCCCACCATTGGAGTATATATACCATATTTTTGACAAGTTTGCAACCAGCCCTGCTCTGTTCAGCGAAGATAAGAA
GGATATAACTTTCAATGTACTATTAAGCACCAAAGACACTGATCAAAAATGTAATGAGCAGGCATGTAAGAAAGTCTTGAGAACTCTTCTTGAACAACTGGAGAAGGAAAAAGGTAAAGATTTCTCAAATATAGAGATTCAAATTAATGTAAAAAAATTTGAATCATGGATATCTGGAGGCTCGGTTGATCCAACTGGCT
TGGCAACTATGGCTATGGGAACATGGATTCGCAGGCTTGCTTGCCTTGTTCCCATCCAAATAGCCCGAGCAGAAAACAACGGACTTCTTGCTCTCAAGGATGGGTTTCAGATACCACCGGAACTGAGTTATGCAGACAGCTTATCTCTGACCAATTTGATCACTTTTGGCATTTATGACACAGTTCTTAGAAACTGGGAG
GGTGAGATCATGGTGATATCATCCATGGGAAAACAAAGCAGCGGAAAATCTTATTTGCTGAATCACTTGTCAGGGTCTCTTTTGGATGTGGCAGGTGGAAGGTGTACCTTGTCAGGGCGTGGGAAAATCTTATTTGCTGAATCACTTCGGATAGGATTCTTTGCCTTATTTTCCATTATTTTAGCTGAATAATGACTGTT
TTCTGAGATTCAGGCTTCAAGGGAAATGGTTGTATTGAATTTATGCCAAGGGCAAAAAGATTTTTCTCACTTCATTGCTAAAACATTACTCACGCTCTGCTTCATTTCACTATTCCCTCTTTCCAATTCCCTAATTGAGATAGTTGCAAAAGATCAAGTACAGCAATAACTCGGTGTTTGAAAAATAGTAATCAGGATGA
TGGAGTGTGGATGACTGCCAGGGCAGCCGAAAAACGCATCTATGTCGTGCTGGACTTTGAAGGGTTGGGTAGTTTTGAGCGGACGGAGCAAGAGGATATGCTACTATCTGTTCTTAATGCAGCAATAAGCAACTTAACAGTCTTCAACAAGAAGGACTTCCATTTAGACAAAGAGACAGAGATAGTCTTCGAGCGCTTTC
AGAATGGGATCAGCCTTGTTAAGCAGGACAAGGACAAAAAACTCTTCAAGGGAATTTTCTATATTGCCATAAAGGACGTTGACAGTTCGGATGTGGACGATTTAAAACATGAATTCGAAGAAAAAATCTCCAAAATTTGTTCCAGAACTCATGAAAACTTTCTCTCAAAAATGTATGGTGGAAAGGTTGAAATAGCAGCA
ATGCCTCCATATAATCGACCTGACTACCAGGATAGCTTAAGGGACATCGCAAGTACATTAGAAGAGATGAAATCATGCTATCATAACGGTACCGCTTTCTTGAATGATGTGAAGCTAGTGATTGCTCAGATTGCAGCAAAGGACTGGACGTCTGTAGACAGTAAACGAGTAGCCTTGAGGGTCAACATATTAAGGAGAAA
TCTAAAGTCTGCTATAGATGGAGGATGCCTCTCTGCTACAGGTGAAATCCAAATGCTAGTTAATTTGGATACGCAGGAAGAAGTTTTGGATTTTCCGGTTGCTGTTGAGGAGGTCATGTTTGATTTCCCCGATACTGGATTAGAATTGGCATCTTCAGTAGAACCAACAGCAGTTGCTGGAAGAATTTTATCTGAGCTCA
GGTCAAGATTAGAAAGTGTTGTGCCGAGAAAAGGAACTGATGGTGAATGGTGGCACTCTGTTTTTGAAAGCTTTTTGGGTGCATTGGCCGATCGAAGACGAAAGCGAGTTGAACAGTGGTTGAATTCTAACACAGTGGATTTTTCCAGTTCTGACGAGGTGCATAAATTACAGTTAGAGGCTGCTGCGGGTATTGCAGAA
ATGAAGCAAAGGCTATGTGTTTGCGGATGTAAATGCTTTAAATGCTTTTGGAGATGTGTGCTTGAAAAAGGCCATGTTTCCTCTCATTCTTGCATGGGTAGCCATGTATGTTCAGAAAAATGCACCTTCTGCACCAAGGAGGAGGAAGAAGAGAATTTTGTTGAGGATTGCAAAAATATGGCAGGGCATGAAGGCCCCCA
TGACTGTAAAATGAAAAACCACACCTGCGGTGAAATTTGTGACTTGTTTAAGAAGTCATCCAACTGTAATAGGTCTTGTTCTATAAAGCTTGGGCATGAGGGTCCACACAAGTGCAATTCTCCCCAACATATGTGCAAGAAAGGATGTTCTCTTCCTACTTGCCAAAATCCGTGTGTTGTGCCAATTGAGTTTGGGGATC
ATGATAGGCATGCTTGCCATGAAAGATACTGTCAAACTCCATGCCTCATGAAGGGCTGTACAAGGACATGTGGTCACAAGGACCATTTTCATGACCTCAATCGTGATGCCGAACATCTATGTGGGAATGAGCATGTGTGCCCTGACAAATGCGAGGTGCCTGGAATATGTGAGATTTTTACCGAATTAGTTCGCCAAACA
AGACAGTTCCAAGGGCGCAGAGGGTCTTTCGAGTATGAGCATGTATCAGAGCAGAACGGTCTACGAAAGGATTGTTGTGTTCCTGTACCAGCTTTTAAGAGGACCCATGAAGGACCCCATGTTCATACAACGAATGAGGATGCTATTCACTATTGTGAGACAAGATGCCATTCTTGTGGCTATTTTTGCCAACTTCCGAT
CGATCACCCTGGTTTGCATAACACAGTGCATGGCAATATGAGAAATGTTAAATTCATTTCAGAAACAGAGGAGATTGATATTGATGACAGAAAGTACGCATGGGGAGAAACAGGGCTGGCAGAAATGTGCAATATGCATTGTAAAAAACAAGGGAGGGGCCACATTCATTTGGTTCCATGCCCAGAAAACTGCACCAGCA
AGCTATATGATGGCTCCAGGCACGAAACTAGGAAATATGGTCCGGACCTGGATGTACCCAAGGATGAGATGACTCATGAGACTTATTGGAAATATATTAGATTCGTTGATCCCTGCTCTGAGGAAGAGCAGAACGTGTTTGGCCTCTGCAATCACTATTGCAGATCGGAGGAGCATGAAGAGCTCTCAGACCAAAAGGCC
GGCGCAGCTCAGAAATCTTATTGTACCGAGAAACTTTGGCATGCTCCTATCAAAATAACTGGATTGAATGTCAGTTCTGCAGGCTATATAACAGATGATGGGCATCATTTTGGCTGTGATCATTCCAAGAATGTTCCTCATCATGTCATTTTTGTCATTGATAAATCAGGGTCCATGACCAGTACAGATATTAAGCCAAC
AATGTCGATGTTTTCTCCTTCTCATGATTTTAGGCTTGGTTGTGTGTTTGAGGCTATTATAAGGTTTATAAGAACTCGCCTTAGGACTGTATCTGATGATTCGGTGTCAGTGGTTCTCTTCGACTGCAGCGCAGTTATTGCTGTAGAGATGAAAGAGATGAGGGAGGAAGTTGTTAATTCGCTTCTTGCTTATGATGCAG
ATGGAGGAACTACTTATTCATCTGGGTTGGAATTGGCTGAAAGGGTGATGATCAAAGCCTCAAGAGATCCGACAACTGATCAGAAAAGACCAATGATTGTGTTTTTGAGTGATGGAGGAAATAATGGGGGAGGGGATCCTCTATATTATGTGGACAGAATGAAACAACAAGAGCCGAGGATGATTCTTCACACTATAATG
TTTGGAAACGACCCCACATTCAAAATTCTCAGAGATATGGCCAACATTGGCAACGGAACATTTCAGCTTAGTCTTGATGAAGTGCAATTAGCAAAAAGCTTTGAAGACCTAGCCACAAGTCTTAAGCCCAAAGTTGCAGCCTTAATGTAGGGATGTAGCAGGTATTTTAGACTAATCTTCCCTTACAGAAATCCTACTGG
ACATGCAGACTTTTGTTTTTTTGGTTAGACATTTGTATTTTTGTTTTGCTAAATCTACGCCCTTATGTAACATATATGTTTTATTTAATTAGTGTAATGCAGTATGGTAGTTCAGTTTTTTTGTATGAATGAATACAGAACCTACGGCAGCTTATGAGGAGCCATCTGAATTATGTAGCCAGATCTGAAGTTCGCTAAAA
TACACATATTTGAATCATGTATATGATAGCTCCAGATTTGTGAATGAATATAGAATCTTCAGCAGCTTATGAGATAGAATGTAACTATGCAAGTCATGTAAACCATATCCGAAGTTCACCAAAATACACATATTTGCTTCAATGAATATTTCATAGAATTGTTTTTGCAGATTTTCCAGTTGTGAGCTTCTTGTTCACTG
AAGTTGCATTTGTTATTAATAGTTAACATATTAGATATACATTATTTGAAA
Intron 2 GTATTTTAGA ... TGTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.24 | 43 | 109 | 94 |
| A2 | 75.29 | 32 | 100 | 95 |
| A3 | 72.48 | 41 | 111 | 105 |
| A4 | 71.55 | 34 | 92 | 79 |
| A5 | 63.33 | 22 | 42 | 34 |
| A6 | 73.53 | 268 | 712 | 777 |
| A7 | 73.17 | 211 | 597 | 554 |
| A8 | 74.53 | 325 | 1005 | 897 |
| A9 | 72.69 | 228 | 659 | 555 |
| A10 | 70.32 | 134 | 344 | 291 |
>TRINITY_DN112935_c1_g1_i7 from sample A5 / Example spliced isoformAGCTTCTTCTTAGACACACAACCAATCAATTCGAGCTTTCAAGACAATGACATTTCAAAGTAATCCATATTCTTTGTTTTATAGTGCGAATGTTTTTTCAAACGAAAAAGTTTATTAAATTGTAGAGCAAGGAACGCTGCAGATAAATCGAAAACACAAGGGATCCAATAAATTGCAGAAGAAGGAACCTGCGAGGGAAT
CGAAGAGACTGGCGGTACGGAAAAACTTATTGCTTTCTAAGATCCGCTTCAGCGGACAGGTGGATGCCAAAAACTGTACCCAAAAGTCTTTCACATCTATATGAACCGTCCCCGATCAGTGGAAACAGCTATGTTCTGTGTTAGAAATGCGCGGCAACTTTGTGTTAGACCGAACAATTCTGTATTTCGTCTTCCCTGCT
CGGCTTCATCATGGCGTCTTTGAGGTTTTGAGGTGTTGGTATGTTTCAATTTTGACTGAAGTTAGTTTTTGTCTTTGCCTGATAGCAATATTTTAAGGATCTGCATTGAGATTCGCTCCTGACGGTCGAGGGTCGTATTGTTTGATTGAAATTATGGAAGAAGAAAGAGAGATGGTTTCTGTTGATTCAATGGATTATTT
GATGGATTCAACCCCTGTGTCTAACAGTTTACCTCTTTTCAAGGTAATGTGTTTTGTTTCTGACAGACAAGAGCTTAGTTTTGTGGAGAAGGTCCAACTGCCGCAGGACCAGATTTTGCTTCTTTGCAATGAGCTTGTTCCCAATTCTGCAACAACCATGGGTACTCAATTTACCCAAATGCGCATAAATTTCAATGCAT
TAAATCAGCGATGCTTGCCTGTGGTTGGATTTTACGGAAGCAAGCAAATGATGGCAGAGGCTTTCAGGAAGCAAGGCTTGTTAGGAGAAGAGGAGGTTCTTGATCAGTTGGAACCAGGACTGTATGCCGTAGTTCGAGAATCAGCCGTTTTTGTATTCTACTGGCATGAAGGTGAAAATCTGAAAGAAGCCTCGAGGAAG
GATGTTTCTTGCAACTTTATTCGATATCTTGTAGAGCTCTCGGATTATCTGCATGTGTGTGTTCAAGGCTACTATCCCTTTGAAGCTTCAGCTTCTTTGGGTAGAACTGTTTCTTCCAAAGGGAGACGCACCAAGAAGCTTCAAATAAACCATGTGCAAAACTCTGAGAACGATGTCAAGTTTTCTGATGGATTTAATGT
CGCCATTGATAGGCAATCCAAGAAATCGACGCCTTCTGTGAACGCTCAAGCATTAGGTAATGTTGTATTCTGCGATGGGTATAATCATTGTGCTTTCTTGACTGCAGAATACAAGCCTCCAGGAGTTTCTAAAAGGCTAGATGGGAGAACTCTGAAAGGAAGTTATCAACTTCGAAGTGAAATCGACAGCTGGTCGAAGG
ATAGCGATTTGAACTACTGCAGAATGAGCCATAAGCATTTCGTCTCTCTGCTGCAATTTGGTAATATTTCAAGATATAATGAATACTGCGATTTCATGAAAACTCTTAGCATTTCCATCGCCGAAGCCCGAGGAGGCATTTCTGCGGAGTCCTCCATGGAAGGAATTCGAGAAAGTGTCGTGGCTTCCTTTTTGAAAATT
CTGCCAGAATACTTTGGTGGAGCGCAATTTCTTGATGGGGCCTCCCCTGGGACTTCGTCTTCACAAAACCATCAAGAACTACGTGGCTCTGGCTTTGTTGATAGGTTTGATCAACTGCATCAAGAGTTGAGTAAGATCTTAGCAGGCAGAGATTGTGATAAGAAGCTCATTTACTACGGATCTTTGGTCAAGTTTATTGA
TCCCAGTGATGATGATGGTGGTTCTTTTAATTTTAGGATTGAAGGGCCCCAGAAGCAAACTGAGAATCAAACTGGACCTGTTAGATATGGACGAGATATAGTTTTGAAATGTATAAATCCAAAGAGGGACTTGAAGGCGACGATACTGCAATCAAACGAAGAAACCCTTCAAGTGCCATTTCCATTTTCAGGTGACCGGG
TAATCTTGAAAATGAAACGCCAATGGCACTTAGAAGGAGCCCTTGAAGTTGTCGAAACCAGTTCCGTTGCTCTACAGAATTGGGTTAAGTCTCTGATTCCCAAGAAATTGCAGTGTTTAGGTAGAAACATCGGTTTTGTAGCATTGCTGGTAAACAGAGGGGGCAGTGACAAACAATTGCATTCAGTTGGAAGACCTCTC
ATTGAAAAGATTTTGACAACAGAGAATTTGAAGAGTATTGAGCGCGACCTGCCAGATGAGATTGGCAAGCTTTTTAAACAATTCGAGTCAAAAGGTGCACCTGCTGTTGATGAAGCGATGTGGGTCAAGCTCCTATCTAATAAACAGGTCAGACCAGTAATTTCAATTCTTTACAAGACATCCAGAGAAGAATTCGTACA
AAATCTCGAATCTATGGTGAAGAAAGAATTCTTGAGTGCTTTTCAAAAGAAGGTTGAATCTCAAGGCACAGAAACCAAAAATCTTTTACAGCAGAACCGAAATTCAGAAGAAGATAAATTCCTATCGGCAATGAAGCTCGAGATGTCAGTGATGACAGACAAACCGGTATGCAGGTTCATCGAGGCTTTTGAAGCCCAGC
GTTCTTGGTTTCCCTACCCGTCGGAGCAGCTAAATCTGAAGGTTTCAATTGAAAGACATGAGAAGTCTAGCATTGCATGGAGGATTTCTGAGCTGATGCCAAGGAAAAATGATTTGGAGGAGTTAAGCCGAAACAGTGAGTATCGGATCACTCCAACATGTACTGATCAATTTGAGTTGGTCACCCTCGACCCGGAGGTA
GGACGCATTCTAAAAGTGGTGGTCCTTAAGTCTGGTCACTTGTTGGCGTTCATTGAGACTTTGGTTGATCCCTGCCTGTATGTTTATAGTTGCTCTCGCATGGGTTTAAGCCTAGATGGCATAAATCCTATACGAAAATTCAGGAGGGGCTATGATTTATTGTCTGTGGACGAATGTACTCGATTTGTTGCCTTATATGA
TAAGCTAAGCTGTAAGGTTGCAGTACACAGGTTTGATGAATCTTTCCGCAACCTGGATCCTACCGGGGTAGAAGTGGGTCTCCATAAATTTACTGGCATTGGAATCTTAACATGGATGCATCTGATACCGGGGAAAAGGGAATTGGTCTTGATTGACGACACAAACAAGGTCAGGGTGGTGGAACTCCATATGCAGCCGA
TGATGAAACCCAGGCCTCTAACTCTTCCTTCACCTGTTTCAGTAGCTCTTGTTTCGGTGGATGGATCATTTTTATTTGTCTTCCGCAAGTCAGACAACAATGATGAAGTGCTAGAAGCTAGCAAGGATATGATACAGGTGGCTGGAAAAGCTATCGATTCTTCTGTCACGGTGGATATATATGTCTTGGCCGATGTCATG
AGCCTCTTGAGGACCATTCCCTTGAAAAAAAGCATCAGAGATTTGGGAGAGCTTCAAGTGAAGATTGTGAATTTTGGGTCACAGAGTCATCTTGTTTTCTTCAATGCATCAGCTCATCGTAACATTTATTCCTGCATCTTGAAAACTGTTTCAGCAAAGGAAGTTGTCCAATTACAAACAATACAAAGTGCAGAAGGCAA
GGTAGCTCAAGCGCCTGAAGAAAGAAGAATTTCTGGATCTTGCCCACCATTGGAGTATATATACCATATTTTTGACAAGTTTGCAACCAGCCCTGCTCTGTTCAGCGAAGATAAGAAGGATATAACTTTCAATGTACTATTAAGCACCAAAGACACTGATCAAAAATGTAATGAGCAGGCATGTAAGAAAGTCTTGAGAA
CTCTTCTTGAACAACTGGAGAAGGAAAAAGGTAAAGATTTCTCAAATATAGAGATTCAAATTAATGTAAAAAAATTTGAATCATGGATATCTGGAGGCTCGGTTGATCCAACTGGCTTGGCAACTATGGCTATGGGAACATGGATTCGCAGGCTTGCTTGCCTTGTTCCCATCCAAATAGCCCGAGCAGAAAACAACGGA
CTTCTTGCTCTCAAGGATGGGTTTCAGATACCACCGGAACTGAGTTATGCAGACAGCTTATCTCTGACCAATTTGATCACTTTTGGCATTTATGACACAGTTCTTAGAAACTGGGAGGGTGAGATCATGGTGATATCATCCATGGGAAAACAAAGCAGCGGAAAATCTTATTTGCTGAATCACTTGTCAGGGTCTCTTTT
GGATGTGGCAGGTGGAAGGTGTACTGATGGAGTGTGGATGACTGCCAGGGCAGCCGAAAAACGCATCTATGTCGTGCTGGACTTTGAAGGGTTGGGTAGTTTTGAGCGGACGGAGCAAGAGGATATGCTACTATCTGTTCTTAATGCAGCAATAAGCAACTTAACAGTCTTCAACAAGAAGGACTTCCATTTAGACAAAG
AGACAGAGATAGTCTTCGAGCGCTTTCAGAATGGGATCAGCCTTGTTAAGCAGGACAAGGACAAAAAACTCTTCAAGGGAATTTTCTATATTGCCATAAAGGACGTTGACAGTTCGGATGTGGACGATTTAAAACATGAATTCGAAGAAAAAATCTCCAAAATTTGTTCCAGAACTCATGAAAACTTTCTCTCAAAAATG
TATGGTGGAAAGGTTGAAATAGCAGCAATGCCTCCATATAATCGACCTGACTACCAGGATAGCTTAAGGGACATCGCAAGTACATTAGAAGAGATGAAATCATGCTATCATAACGGTACCGCTTTCTTGAATGATGTGAAGCTAGTGATTGCTCAGATTGCAGCAAAGGACTGGACGTCTGTAGACAGTAAACGAGTAGC
CTTGAGGGTCAACATATTAAGGAGAAATCTAAAGTCTGCTATAGATGGAGGATGCCTCTCTGCTACAGGTGAAATCCAAATGCTAGTTAATTTGGATACGCAGGAAGAAGTTTTGGATTTTCCGGTTGCTGTTGAGGAGGTCATGTTTGATTTCCCCGATACTGGATTAGAATTGGCATCTTCAGTAGAACCAACAGCAG
TTGCTGGAAGAATTTTATCTGAGCTCAGGTCAAGATTAGAAAGTGTTGTGCCGAGAAAAGGAACTGATGGTGAATGGTGGCACTCTGTTTTTGAAAGCTTTTTGGGTGCATTGGCCGATCGAAGACGAAAGCGAGTTGAACAGTGGTTGAATTCTAACACAGTGGATTTTTCCAGTTCTGACGAGGTGCATAAATTACAG
TTAGAGGCTGCTGCGGGTATTGCAGAAATGAAGCAAAGGCTATGTGTTTGCGGATGTAAATGCTTTAAATGCTTTTGGAGATGTGTGCTTGAAAAAGGCCATGTTTCCTCTCATTCTTGCATGGGTAGCCATGTATGTTCAGAAAAATGCACCTTCTGCACCAAGGAGGAGGAAGAAGAGAATTTTGTTGAGGATTGCAA
AAATATGGCAGGGCATGAAGGCCCCCATGACTGTAAAATGAAAAACCACACCTGCGGTGAAATTTGTGACTTGTTTAAGAAGTCATCCAACTGTAATAGGTCTTGTTCTATAAAGCTTGGGCATGAGGGTCCACACAAGTGCAATTCTCCCCAACATATGTGCAAGAAAGGATGTTCTCTTCCTACTTGCCAAAATCCGT
GTGTTGTGCCAATTGAGTTTGGGGATCATGATAGGCATGCTTGCCATGAAAGATACTGTCAAACTCCATGCCTCATGAAGGGCTGTACAAGGACATGTGGTCACAAGGACCATTTTCATGACCTCAATCGTGATGCCGAACATCTATGTGGGAATGAGCATGTGTGCCCTGACAAATGCGAGGTGCCTGGAATATGTGAG
ATTTTTACCGAATTAGTTCGCCAAACAAGACAGTTCCAAGGGCGCAGAGGGTCTTTCGAGTATGAGCATGTATCAGAGCAGAACGGTCTACGAAAGGATTGTTGTGTTCCTGTACCAGCTTTTAAGAGGACCCATGAAGGACCCCATGTTCATACAACGAATGAGGATGCTATTCACTATTGTGAGACAAGATGCCATTC
TTGTGGCTATTTTTGCCAACTTCCGATCGATCACCCTGGTTTGCATAACACAGTGCATGGCAATATGAGAAATGTTAAATTCATTTCAGAAACAGAGGAGATTGATATTGATGACAGAAAGTACGCATGGGGAGAAACAGGGCTGGCAGAAATGTGCAATATGCATTGTAAAAAACAAGGGAGGGGCCACATTCATTTGG
TTCCATGCCCAGAAAACTGCACCAGCAAGCTATATGATGGCTCCAGGCACGAAACTAGGAAATATGGTCCGGACCTGGATGTACCCAAGGATGAGATGACTCATGAGACTTATTGGAAATATATTAGATTCGTTGATCCCTGCTCTGAGGAAGAGCAGAACGTGTTTGGCCTCTGCAATCACTATTGCAGATCGGAGGAG
CATGAAGAGCTCTCAGACCAAAAGGCCGGCGCAGCTCAGAAATCTTATTGTACCGAGAAACTTTGGCATGCTCCTATCAAAATAACTGGATTGAATGTCAGTTCTGCAGGCTATATAACAGATGATGGGCATCATTTTGGCTGTGATCATTCCAAGAATGTTCCTCATCATGTCATTTTTGTCATTGATAAATCAGGGTC
CATGACCAGTACAGATATTAAGCCAACAATGTCGATGTTTTCTCCTTCTCATGATTTTAGGCTTGGTTGTGTGTTTGAGGCTATTATAAGGTTTATAAGAACTCGCCTTAGGACTGTATCTGATGATTCGGTGTCAGTGGTTCTCTTCGACTGCAGCGCAGTTATTGCTGTAGAGATGAAAGAGATGAGGGAGGAAGTTG
TTAATTCGCTTCTTGCTTATGATGCAGATGGAGGAACTACTTATTCATCTGGGTTGGAATTGGCTGAAAGGGTGATGATCAAAGCCTCAAGAGATCCGACAACTGATCAGAAAAGACCAATGATTGTGTTTTTGAGTGATGGAGGAAATAATGGGGGAGGGGATCCTCTATATTATGTGGACAGAATGAAACAACAAGAG
CCGAGGATGATTCTTCACACTATAATGTTTGGAAACGACCCCACATTCAAAATTCTCAGAGATATGGCCAACATTGGCAACGGAACATTTCAGCTTAGTCTTGATGAAGTGCAATTAGCAAAAAGCTTTGAAGACCTAGCCACAAGTCTTAAGCCCAAAGTTGCAGCCTTAATGTAGGGATGTAGCAGTATGGTAGTTCA
GTTTTTTTGTATGAATGAATACAGAACCTACGGCAGCTTATGAGGAGCCATCTGAATTATGTAGCCAGATCTGAAGTTCGCTAAAATACACATATTTGAATCATGTATATGATAGCTCCAGATTTGTGAATGAATATAGAATCTTCAGCAGCTTATGAGATAGAATGTAACTATGCAAGTCATGTAAACCATATCCGAAG
TTCACCAAC
>TRINITY_DN112935_c1_g1_i3 from sample A5 / Example unspliced isoform:AGCTTCTTCTTAGACACACAACCAATCAATTCGAGCTTTCAAGACAATGACATTTCAAAGTAATCCATATTCTTTGTTTTATAGTGCGAATGTTTTTTCAAACGAAAAAGTTTATTAAATTGTAGAGCAAGGAACGCTGCAGATAAATCGAAAACACAAGGGATCCAATAAATTGCAGAAGAAGGAACCTGCGAGGGAAT
CGAAGAGACTGGCGGTACGGAAAAACTTATTGCTTTCTAAGATCCGCTTCAGCGGACAGGTGGATGCCAAAAACTGTACCCAAAAGTCTTTCACATCTATATGAACCGTCCCCGATCAGTGGAAACAGCTATGTTCTGTGTTAGAAATGCGCGGCAACTTTGTGTTAGACCGAACAATTCTGTATTTCGTCTTCCCTGCT
CGGCTTCATCATGGCGTCTTTGAGGTTTTGAGGTGTTGGTATGTTTCAATTTTGACTGAAGTTAGTTTTTGTCTTTGCCTGATAGCAATATTTTAAGGATCTGCATTGAGATTCGCTCCTGACGGTCGAGGGTCGTATTGTTTGATTGAAATTATGGAAGAAGAAAGAGAGATGGTTTCTGTTGATTCAATGGATTATTT
GATGGATTCAACCCCTGTGTCTAACAGTTTACCTCTTTTCAAGGTAATGTGTTTTGTTTCTGACAGACAAGAGCTTAGTTTTGTGGAGAAGGTCCAACTGCCGCAGGACCAGATTTTGCTTCTTTGCAATGAGCTTGTTCCCAATTCTGCAACAACCATGGGTACTCAATTTACCCAAATGCGCATAAATTTCAATGCAT
TAAATCAGCGATGCTTGCCTGTGGTTGGATTTTACGGAAGCAAGCAAATGATGGCAGAGGCTTTCAGGAAGCAAGGCTTGTTAGGAGAAGAGGAGGTTCTTGATCAGTTGGAACCAGGACTGTATGCCGTAGTTCGAGAATCAGCCGTTTTTGTATTCTACTGGCATGAAGGTGAAAATCTGAAAGAAGCCTCGAGGAAG
GATGTTTCTTGCAACTTTATTCGATATCTTGTAGAGCTCTCGGATTATCTGCATGTGTGTGTTCAAGGCTACTATCCCTTTGAAGCTTCAGCTTCTTTGGGTAGAACTGTTTCTTCCAAAGGGAGACGCACCAAGAAGCTTCAAATAAACCATGTGCAAAACTCTGAGAACGATGTCAAGTTTTCTGATGGATTTAATGT
CGCCATTGATAGGCAATCCAAGAAATCGACGCCTTCTGTGAACGCTCAAGCATTAGGTAATGTTGTATTCTGCGATGGGTATAATCATTGTGCTTTCTTGACTGCAGAATACAAGCCTCCAGGAGTTTCTAAAAGGCTAGATGGGAGAACTCTGAAAGGAAGTTATCAACTTCGAAGTGAAATCGACAGCTGGTCGAAGG
ATAGCGATTTGAACTACTGCAGAATGAGCCATAAGCATTTCGTCTCTCTGCTGCAATTTGGTAATATTTCAAGATATAATGAATACTGCGATTTCATGAAAACTCTTAGCATTTCCATCGCCGAAGCCCGAGGAGGCATTTCTGCGGAGTCCTCCATGGAAGGAATTCGAGAAAGTGTCGTGGCTTCCTTTTTGAAAATT
CTGCCAGAATACTTTGGTGGAGCGCAATTTCTTGATGGGGCCTCCCCTGGGACTTCGTCTTCACAAAACCATCAAGAACTACGTGGCTCTGGCTTTGTTGATAGGTTTGATCAACTGCATCAAGAGTTGAGTAAGATCTTAGCAGGCAGAGATTGTGATAAGAAGCTCATTTACTACGGATCTTTGGTCAAGTTTATTGA
TCCCAGTGATGATGATGGTGGTTCTTTTAATTTTAGGATTGAAGGGCCCCAGAAGCAAACTGAGAATCAAACTGGACCTGTTAGATATGGACGAGATATAGTTTTGAAATGTATAAATCCAAAGAGGGACTTGAAGGCGACGATACTGCAATCAAACGAAGAAACCCTTCAAGTGCCATTTCCATTTTCAGGTGACCGGG
TAATCTTGAAAATGAAACGCCAATGGCACTTAGAAGGAGCCCTTGAAGTTGTCGAAACCAGTTCCGTTGCTCTACAGAATTGGGTTAAGTCTCTGATTCCCAAGAAATTGCAGTGTTTAGGTAGAAACATCGGTTTTGTAGCATTGCTGGTAAACAGAGGGGGCAGTGACAAACAATTGCATTCAGTTGGAAGACCTCTC
ATTGAAAAGATTTTGACAACAGAGAATTTGAAGAGTATTGAGCGCGACCTGCCAGATGAGATTGGCAAGCTTTTTAAACAATTCGAGTCAAAAGGTGCACCTGCTGTTGATGAAGCGATGTGGGTCAAGCTCCTATCTAATAAACAGGTCAGACCAGTAATTTCAATTCTTTACAAGACATCCAGAGAAGAATTCGTACA
AAATCTCGAATCTATGGTGAAGAAAGAATTCTTGAGTGCTTTTCAAAAGAAGGTTGAATCTCAAGGCACAGAAACCAAAAATCTTTTACAGCAGAACCGAAATTCAGAAGAAGATAAATTCCTATCGGCAATGAAGCTCGAGATGTCAGTGATGACAGACAAACCGGTATGCAGGTTCATCGAGGCTTTTGAAGCCCAGC
GTTCTTGGTTTCCCTACCCGTCGGAGCAGCTAAATCTGAAGGTTTCAATTGAAAGACATGAGAAGTCTAGCATTGCATGGAGGATTTCTGAGCTGATGCCAAGGAAAAATGATTTGGAGGAGTTAAGCCGAAACAGTGAGTATCGGATCACTCCAACATGTACTGATCAATTTGAGTTGGTCACCCTCGACCCGGAGGTA
GGACGCATTCTAAAAGTGGTGGTCCTTAAGTCTGGTCACTTGTTGGCGTTCATTGAGACTTTGGTTGATCCCTGCCTGTATGTTTATAGTTGCTCTCGCATGGGTTTAAGCCTAGATGGCATAAATCCTATACGAAAATTCAGGAGGGGCTATGATTTATTGTCTGTGGACGAATGTACTCGATTTGTTGCCTTATATGA
TAAGCTAAGCTGTAAGGTTGCAGTACACAGGTTTGATGAATCTTTCCGCAACCTGGATCCTACCGGGGTAGAAGTGGGTCTCCATAAATTTACTGGCATTGGAATCTTAACATGGATGCATCTGATACCGGGGAAAAGGGAATTGGTCTTGATTGACGACACAAACAAGGTCAGGGTGGTGGAACTCCATATGCAGCCGA
TGATGAAACCCAGGCCTCTAACTCTTCCTTCACCTGTTTCAGTAGCTCTTGTTTCGGTGGATGGATCATTTTTATTTGTCTTCCGCAAGTCAGACAACAATGATGAAGTGCTAGAAGCTAGCAAGGATATGATACAGGTGGCTGGAAAAGCTATCGATTCTTCTGTCACGGTGGATATATATGTCTTGGCCGATGTCATG
AGCCTCTTGAGGACCATTCCCTTGAAAAAAAGCATCAGAGATTTGGGAGAGCTTCAAGTGAAGATTGTGAATTTTGGGTCACAGAGTCATCTTGTTTTCTTCAATGCATCAGCTCATCGTAACATTTATTCCTGCATCTTGAAAACTGTTTCAGCAAAGGAAGTTGTCCAATTACAAACAATACAAAGTGCAGAAGGCAA
GGTAGCTCAAGCGCCTGAAGAAAGAAGAATTTCTGGATCTTGCCCACCATTGGAGTATATATACCATATTTTTGACAAGTTTGCAACCAGCCCTGCTCTGTTCAGCGAAGATAAGAAGGATATAACTTTCAATGTACTATTAAGCACCAAAGACACTGATCAAAAATGTAATGAGCAGGCATGTAAGAAAGTCTTGAGAA
CTCTTCTTGAACAACTGGAGAAGGAAAAAGGTAAAGATTTCTCAAATATAGAGATTCAAATTAATGTAAAAAAATTTGAATCATGGATATCTGGAGGCTCGGTTGATCCAACTGGCTTGGCAACTATGGCTATGGGAACATGGATTCGCAGGCTTGCTTGCCTTGTTCCCATCCAAATAGCCCGAGCAGAAAACAACGGA
CTTCTTGCTCTCAAGGATGGGTTTCAGATACCACCGGAACTGAGTTATGCAGACAGCTTATCTCTGACCAATTTGATCACTTTTGGCATTTATGACACAGTTCTTAGAAACTGGGAGGGTGAGATCATGGTGATATCATCCATGGGAAAACAAAGCAGCGGAAAATCTTATTTGCTGAATCACTTGTCAGGGTCTCTTTT
GGATGTGGCAGGTGGAAGGTGTACTGATGGAGTGTGGATGACTGCCAGGGCAGCCGAAAAACGCATCTATGTCGTGCTGGACTTTGAAGGGTTGGGTAGTTTTGAGCGGACGGAGCAAGAGGATATGCTACTATCTGTTCTTAATGCAGCAATAAGCAACTTAACAGTCTTCAACAAGAAGGACTTCCATTTAGACAAAG
AGACAGAGATAGTCTTCGAGCGCTTTCAGAATGGGATCAGCCTTGTTAAGCAGGACAAGGACAAAAAACTCTTCAAGGGAATTTTCTATATTGCCATAAAGGACGTTGACAGTTCGGATGTGGACGATTTAAAACATGAATTCGAAGAAAAAATCTCCAAAATTTGTTCCAGAACTCATGAAAACTTTCTCTCAAAAATG
TATGGTGGAAAGGTTGAAATAGCAGCAATGCCTCCATATAATCGACCTGACTACCAGGATAGCTTAAGGGACATCGCAAGTACATTAGAAGAGATGAAATCATGCTATCATAACGGTACCGCTTTCTTGAATGATGTGAAGCTAGTGATTGCTCAGATTGCAGCAAAGGACTGGACGTCTGTAGACAGTAAACGAGTAGC
CTTGAGGGTCAACATATTAAGGAGAAATCTAAAGTCTGCTATAGATGGAGGATGCCTCTCTGCTACAGGTGAAATCCAAATGCTAGTTAATTTGGATACGCAGGAAGAAGTTTTGGATTTTCCGGTTGCTGTTGAGGAGGTCATGTTTGATTTCCCCGATACTGGATTAGAATTGGCATCTTCAGTAGAACCAACAGCAG
TTGCTGGAAGAATTTTATCTGAGCTCAGGTCAAGATTAGAAAGTGTTGTGCCGAGAAAAGGAACTGATGGTGAATGGTGGCACTCTGTTTTTGAAAGCTTTTTGGGTGCATTGGCCGATCGAAGACGAAAGCGAGTTGAACAGTGGTTGAATTCTAACACAGTGGATTTTTCCAGTTCTGACGAGGTGCATAAATTACAG
TTAGAGGCTGCTGCGGGTATTGCAGAAATGAAGCAAAGGCTATGTGTTTGCGGATGTAAATGCTTTAAATGCTTTTGGAGATGTGTGCTTGAAAAAGGCCATGTTTCCTCTCATTCTTGCATGGGTAGCCATGTATGTTCAGAAAAATGCACCTTCTGCACCAAGGAGGAGGAAGAAGAGAATTTTGTTGAGGATTGCAA
AAATATGGCAGGGCATGAAGGCCCCCATGACTGTAAAATGAAAAACCACACCTGCGGTGAAATTTGTGACTTGTTTAAGAAGTCATCCAACTGTAATAGGTCTTGTTCTATAAAGCTTGGGCATGAGGGTCCACACAAGTGCAATTCTCCCCAACATATGTGCAAGAAAGGATGTTCTCTTCCTACTTGCCAAAATCCGT
GTGTTGTGCCAATTGAGTTTGGGGATCATGATAGGCATGCTTGCCATGAAAGATACTGTCAAACTCCATGCCTCATGAAGGGCTGTACAAGGACATGTGGTCACAAGGACCATTTTCATGACCTCAATCGTGATGCCGAACATCTATGTGGGAATGAGCATGTGTGCCCTGACAAATGCGAGGTGCCTGGAATATGTGAG
ATTTTTACCGAATTAGTTCGCCAAACAAGACAGTTCCAAGGGCGCAGAGGGTCTTTCGAGTATGAGCATGTATCAGAGCAGAACGGTCTACGAAAGGATTGTTGTGTTCCTGTACCAGCTTTTAAGAGGACCCATGAAGGACCCCATGTTCATACAACGAATGAGGATGCTATTCACTATTGTGAGACAAGATGCCATTC
TTGTGGCTATTTTTGCCAACTTCCGATCGATCACCCTGGTTTGCATAACACAGTGCATGGCAATATGAGAAATGTTAAATTCATTTCAGAAACAGAGGAGATTGATATTGATGACAGAAAGTACGCATGGGGAGAAACAGGGCTGGCAGAAATGTGCAATATGCATTGTAAAAAACAAGGGAGGGGCCACATTCATTTGG
TTCCATGCCCAGAAAACTGCACCAGCAAGCTATATGATGGCTCCAGGCACGAAACTAGGAAATATGGTCCGGACCTGGATGTACCCAAGGATGAGATGACTCATGAGACTTATTGGAAATATATTAGATTCGTTGATCCCTGCTCTGAGGAAGAGCAGAACGTGTTTGGCCTCTGCAATCACTATTGCAGATCGGAGGAG
CATGAAGAGCTCTCAGACCAAAAGGCCGGCGCAGCTCAGAAATCTTATTGTACCGAGAAACTTTGGCATGCTCCTATCAAAATAACTGGATTGAATGTCAGTTCTGCAGGCTATATAACAGATGATGGGCATCATTTTGGCTGTGATCATTCCAAGAATGTTCCTCATCATGTCATTTTTGTCATTGATAAATCAGGGTC
CATGACCAGTACAGATATTAAGCCAACAATGTCGATGTTTTCTCCTTCTCATGATTTTAGGCTTGGTTGTGTGTTTGAGGCTATTATAAGGTTTATAAGAACTCGCCTTAGGACTGTATCTGATGATTCGGTGTCAGTGGTTCTCTTCGACTGCAGCGCAGTTATTGCTGTAGAGATGAAAGAGATGAGGGAGGAAGTTG
TTAATTCGCTTCTTGCTTATGATGCAGATGGAGGAACTACTTATTCATCTGGGTTGGAATTGGCTGAAAGGGTGATGATCAAAGCCTCAAGAGATCCGACAACTGATCAGAAAAGACCAATGATTGTGTTTTTGAGTGATGGAGGAAATAATGGGGGAGGGGATCCTCTATATTATGTGGACAGAATGAAACAACAAGAG
CCGAGGATGATTCTTCACACTATAATGTTTGGAAACGACCCCACATTCAAAATTCTCAGAGATATGGCCAACATTGGCAACGGAACATTTCAGCTTAGTCTTGATGAAGTGCAATTAGCAAAAAGCTTTGAAGACCTAGCCACAAGTCTTAAGCCCAAAGTTGCAGCCTTAATGTAGGGATGTAGCAGgtattttagact
aatcttcccttacagaaatcctactggacatgcagacttttgtttttttggttagacatttgtatttttgttttgctaaatctacgcccttatgtaacagatatgttttatttaattagtgtaatgcagTATGGTAGTTCAGTTTTTTTGTATGAATGAATACAGAACCTACGGCAGCTTATGAGGAGCCATCTGAATTA
TGTAGCCAGATCTGAAGTTCGCTAAAATACACATATTTGAATCATGTATATGATAGCTCCAGATTTGTGAATGAATATAGAATCTTCAGCAGCTTATGAGATAGAATGTAACTATGCAAGTCATGTAAACCATATCCGAAGTTCACCAAC