sp|C0LU16|MED21_ARATH ----> Mediator of RNA polymerase II transcription subunit 21
Intron 1 GTAAGCATGG ... TACACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 3 | 10 | 8 |
| A2 | 52 | 6 | 7 | 6 |
| A3 | 78.95 | 4 | 19 | 11 |
| A4 | 100 | 0 | 2 | 0 |
| A5 | 57.89 | 4 | 7 | 4 |
| A6 | 68.89 | 7 | 15 | 16 |
| A7 | 83.61 | 5 | 23 | 28 |
| A8 | 80.28 | 7 | 26 | 31 |
| A9 | 76.92 | 6 | 15 | 25 |
| A10 | 81.4 | 4 | 15 | 20 |
>TRINITY_DN98974_c0_g1_i1 from sample A2 / Example spliced isoformCACCTGATATGGCATGATATGCTGTTTCAAGCATATGAGTCACAAATTCATTTCAGTCAGTTAAATATATCTTTTCCTGTTTCAGCGGGCCCAGAATATGCTTCCAGTTTGTCTTGCATTTTCCCTTGAAATCTGGTCATTAGTGGGCTTCCTGCACTTGTCCTGAGTCAAACAAGTTTGAGGAGCCATCGACGCAGATA
AATAGAGAAGCTGAGAGAGCCGAGTCAACTCGTGTCAGACTGCCGACTTAGAGAAGTGCGATTTTTAAAAACAACTCAATTTGAAAACTGAGCTTCCATTCTAAGGTGGACAGATTTCGTAAAAAAAAAAACGCCCGAGTTAAAGCAACTGCCAGAAGTTTGCCCTAGTCGAAGCTTGAAGTTTGCTCCTATTTGACGAG
GGAACTATAGTTTGAGAGATGCCCCAGCTGTACGGTTATCTCCAAATTATCCAGAGCCACAATCTACCTCAACAGAAGATCCAGCTGTAGTGGCAGAACAACCCAAGGCAATGACCACTTCTCTTGTGCAGGCAGCTAAACAGGCAGAGAATGAAG
>TRINITY_DN98974_c0_g1_i3 from sample A2 / Example unspliced isoform:ATGGTAACATAGCACCCTGATTGTGGCCAACCTCAAGAATTTCAGAATTGGTGCTAAGAAGTTTGGCACATTTGATATCAGAGAGAAGGTATAACCTGCACAGGAGCTGAGCCATAGAGAGGAGGCATTGCAGTGAAGAAGAGCAGAACCAGCCCACCAAATAGAAGTTACGGAATACAAGACGCCGAAGAGTTAACAGA
GTCACCAAAGATATTCTGGTTTCGCAGCAGAAGTGAAGGAGAGAAATAATTTGTTGAACCAGGGCCACGTAAAAGAAGATCAGAGAGTCACTGTGTGTGAGCCAGCCGTCAGAAAAACCCGTGTGGAAGCCGTCGATCCCGTCAAGGTTCCGCCTGCAGAATATAAACTCGCGTAGGAAAGAACCTGCAGAGATACGAGT
GGAGCCACGAATTTACGAACAAGCGGAAGATTGAAGTAGCCGCTGGAATTTATGCAGCCGTCAATTCATATTAATAGCCGCCATCGAATTTAAAATCTGCTCGAGTATTAATTCGATCTGAGACAGAAATAGAACGCCACAAATCGTCGGAAGGGTAACCAAGAACAGAGTAAACGCGAACAGAGAAACTCGCGAAGTTG
TGAAGATTGGTCATCATTTTTTGGAGAGATATCGGGACTGTAACCCGAGTCGATTGAAATCCGCCTTCAAGGAGAAAACTTGCAGATAACCCTGAGTCAAACAAGTTCGAGGAGCCATCGGCGCAGAGAAATAGAGAAGCTGAGAGAGCCGAGTCAACTCGTGTCAGACTGCCGACTTAGAGAAGTGCGATTTTTAAAAA
CAACTCAATTTGAAAACTGAGCTTCCATTCTAAGGTGGACAGATTTCGTAAAAAAAAAAACGCCCGAGTTAAAGCAACTGCCAGAAGTTTGCCCTAGTCGAAGCTTGAAGTTTGCTCCTATTTGACGAGGGAACTATAGTTTGgtaagcatggatatcatttcacaactgcaggagcaggtcaataatattgcgggaata
acctttaacacgattggtacactacagAGAGATGCCCCAGCTGTACGGTTATCTCCAAATTATCCAGAGCCACAATCTACCTCAACAGAAGATCCAGCTGTAGTGGCAGAACAACCCAAGGCAATGACCACTTCTCTTGTGCAGGCAGCTAAACAGTTTGATGCCTTGGTAGATGCACTGCCTTTAGCAGAGGGAGGGGA
AGAACTACAACTTATGCGTATTGCACAACTTCAGGCAGAGAATGAAGCCGTAGGTAAGGAGCTTCAAAAAGAAATAGAGGCTGCAGAGTTGGAGTTTAAGCAGAGACAGGAGCTTTTTGACATGATAGCAGACAACTGCTTAAATATGAAGCCACCTAACTAACAATAAGCCAGAATTAGGGCATCCTGATCTTTTAAAG
GGTTATAGTATTGGACCTTGGTAGCCTACCACTTTCACAGATCAAGTTCCAACATTTTACTTAACTGGAGGATGTTGTGACTCATGAGCTTCTGAAACGGATTACCAGACAAAAATTTATGATCCTTATTTACATTGGATGCTGTAGTTGAAAAGAAGCGATAATGAATTTGCACATATGCACAGCTTTTACGATGCTGC
AAGTAATTAGGTTATGTTAAAAAGTCTAGATATGAAATATATGTACATCAGTCGAACTTTAGAACACAAACTGTTTTTCTTTCTATTGTGTCTAGAGA
Intron 2 GTATGTATGC ... ATCAGCACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 50 | 2 | 4 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 2 | 2 |
| A6 | 42.86 | 2 | 1 | 2 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 100 | 0 | 1 | 2 |
| A10 | 25 | 3 | 1 | 1 |
>TRINITY_DN33220_c0_g1_i2 from sample A6 / Example spliced isoformTCCAACTTCACAAACATGGTAACATAGCACCCTGATTGTGGCCAACCTCAAGAATTTCAGAATTGGTGCTAAGAAGTTTGGCACATTTGATATCAGAGAGAAGGTATAACCTGCACAGGAGCTGAGCCATAGAGAGGAGGCATTGCAGTGAAGAAGAGCAGAACCAGCCCACCAAATAGAAGTTACGGAATACAAGACGC
CGAAGAGTTAACAGAGTCACCAAAGATATTCTGGTTTCGCAGCAGAAGTGAAGGAGAGAAATAATTTGTTGAACCAGGGCCACGTAAAAGAAGATCAGAGAGTCACTGTGTGTGAGCCAGCCGTCAGAAAAACCCGTGTGGAAGCCGTCGATCCCGTCAAGGTTCCGCCTGCAGAATATAAACTCGCGTAGGAAAGAACC
TGCAGAGATACGAGTGGAGCCACGAATTTACGAACAAGCGGAAGATTGAAGTAGCCGCTGGAATTTATGCAGCCGTCAATTCATATTAATAGCCGCCATCGAATTTAAAATCTGCTCGAGTATTAATTCGATCTGAGACAGAAATAGAACGCCACAAATCGTCGGAAGGGTAACCAAGAACAGAGTAAACGCGAACAGAG
AAACTCGCGAAGTTGTGAAGATTGGTCATCATTTTTTGGAGAGATATCGGGACTGTAACCCGAGTCGATTGAAATCCGCCTTCAAGGAGAAAACTTGCAGATAACCCTGAGTCAAACAAGTTCGAGGAGCCATCGGCGCAGAGAAATAGAGAAGCTGAGAGAGCCGAGTCAACTCGTGTCAGACTGCCGACTTAGAGAAG
TGCGATTTTTAAAAACAACTCAATTTGAAAACTGAGCTTCCATTCTAAGGTGGACAGATTTCGTAAAAAAAAAAACGCCCGAGTTAAAGCAACTGCCAGAAGTTTGCCCTAGTCGAAGCTTGAAGTTTGCTCCTATTTGACGAGGGAACTATAGTTTGGTAAGCATGGATATCATTTCACAACTGCAGGAGCAGGTCAAT
AATATTGCGGGAATAACCTTTAACACGATTGGTACACTACAGAGAGATGCCCCAGCTGTACGGTTATCTCCAAATTATCCAGAGCCACAATCTACCTCAACAGAAGATCCAGCTGTAGTGGCAGAACAACCCAAGGCAATGACCACTTCTCTTGTGCAGGCAGCTAAACAGTTTGATGCCTTGGTAGATGCACTGCCTTT
AGCAGAGGGAGGGGAAGAACTACAACTTATGCGTATTGCACAACTTCAGGCAGAGAATGAAGCCGTAGGTAAGGAGCTTCAAAAAGAAATAGAGGCTGCAGAGTTGGAGTTTAAGCAGAGACAGGAGCTTTTTGACATGATAGCAGACAACTGCTTAAATATGAAGCCACCTAACTAACAATAAGCCAGAATTAGGGCAT
CCTGATCTTTTAAAGGGTTATAGTATTGGACCTTGGTAGCCTACCACTTTCACAGATCAAGTTCCAACATTTTACTTAACTGGAGGATGTTGTGACTCATGAGCTTCTGAAACGGATTACCAGACAAAAATTTATGATCCTTATTTACATTGGATGCTGTAGTTGAAAAGAAGCGATAATGAATTTGCACATATGCACAG
CTTTTACGATGCTGCAAGTAATTAGGTTATGTTAAAAAGTCTAGATATGAAATATATGTACATCAGTCGAACTTTAGAACACAAACTGTTTTTCTTTCTATTGTGTCTAGAGAAGAAGTTTTTTGATGACCTTGATATGACTCATGAGCTTCTGAAACGAATAATATGACTCATGAGCTTCTGAAACGAATAACAGACAA
AAAAATGTGATTTATTTTTATTGGATGCTGTAGTTGAAAATAAGTGATAATGAGTTGTGCATATGCACACCTTTTACAATGCTGCAAATAATTAGATGAAGTTAAAAAAATCTTGATATAAAACGTATGTACATAAATCAATATTTAGAACACAAATTGTTCATCTTTCTTTTGTGTCTAGACTAGGGTTACCAATATTG
AATATTGTAAATATCGCGTGATTTTCAAAGAAACAATATTATTGCTCCAAAAGAATTGCGATTTATTCTTATCGGCGATATTACCGTGGGTCAATGGAAACAATCACCCCCTGTCTGCACCAATTACAATTTAAGACCCGATTTTTAGCTTCTTTCCCCTCGTTTTGAAAAACAGAGCTAGGCAATTGACAGCTGAGGAG
TTTGTCACTTTCATTGAGCTAACGAGGGGGAATTTAGTTTTTCGTCGCCATTAGTCAAGCTATTGTGGAGTGGGATCAACTCTGGTCCACCATTTCCATATTCCCAGAAGAATGCTCTAAATCAAAATCAACACAAAAGAATGCTTTGCACATCACAGCCCCAGCGCCTGCTGCTTCCAAAGGAAGAACGGTAACCTTTG
CTTCTGAAAGGAATAGAGGGAATCGCTGATTCCTTAGTGTATTTATCACTTTAGAATCTAGATGACTCATGATGATGAACCATAAGATTATATTTATTGAGATACATTTATTATTATTTTGACGTGATTTGTATCAGCCTGCCTTTGAATTAAGTGGTGATGTATCACTTGACATTTTACACATCAGTTGTATTTCATAT
TTATGTGGTAATGTGGTTATTTGTGATGTGATTTGCATCAGCCTGTCAGGACTTAAGAGTCAGGATAGATATCAGAATTCAG
>TRINITY_DN33220_c0_g1_i1 from sample A6 / Example unspliced isoform:TCCAACTTCACAAACATGGTAACATAGCACCCTGATTGTGGCCAACCTCAAGAATTTCAGAATTGGTGCTAAGAAGTTTGGCACATTTGATATCAGAGAGAAGGTATAACCTGCACAGGAGCTGAGCCATAGAGAGGAGGCATTGCAGTGAAGAAGAGCAGAACCAGCCCACCAAATAGAAGTTACGGAATACAAGACGC
CGAAGAGTTAACAGAGTCACCAAAGATATTCTGGTTTCGCAGCAGAAGTGAAGGAGAGAAATAATTTGTTGAACCAGGGCCACGTAAAAGAAGATCAGAGAGTCACTGTGTGTGAGCCAGCCGTCAGAAAAACCCGTGTGGAAGCCGTCGATCCCGTCAAGGTTCCGCCTGCAGAATATAAACTCGCGTAGGAAAGAACC
TGCAGAGATACGAGTGGAGCCACGAATTTACGAACAAGCGGAAGATTGAAGTAGCCGCTGGAATTTATGCAGCCGTCAATTCATATTAATAGCCGCCATCGAATTTAAAATCTGCTCGAGTATTAATTCGATCTGAGACAGAAATAGAACGCCACAAATCGTCGGAAGGGTAACCAAGAACAGAGTAAACGCGAACAGAG
AAACTCGCGAAGTTGTGAAGATTGGTCATCATTTTTTGGAGAGATATCGGGACTGTAACCCGAGTCGATTGAAATCCGCCTTCAAGGAGAAAACTTGCAGATAACCCTGAGTCAAACAAGTTCGAGGAGCCATCGGCGCAGAGAAATAGAGAAGCTGAGAGAGCCGAGTCAACTCGTGTCAGACTGCCGACTTAGAGAAG
TGCGATTTTTAAAAACAACTCAATTTGAAAACTGAGCTTCCATTCTAAGGTGGACAGATTTCGTAAAAAAAAAAACGCCCGAGTTAAAGCAACTGCCAGAAGTTTGCCCTAGTCGAAGCTTGAAGTTTGCTCCTATTTGACGAGGGAACTATAGTTTGGTAAGCATGGATATCATTTCACAACTGCAGGAGCAGGTCAAT
AATATTGCGGGAATAACCTTTAACACGATTGGTACACTACAGAGAGATGCCCCAGCTGTACGGTTATCTCCAAATTATCCAGAGCCACAATCTACCTCAACAGAAGATCCAGCTGTAGTGGCAGAACAACCCAAGGCAATGACCACTTCTCTTGTGCAGGCAGCTAAACAGTTTGATGCCTTGGTAGATGCACTGCCTTT
AGCAGAGGGAGGGGAAGAACTACAACTTATGCGTATTGCACAACTTCAGGCAGAGAATGAAGCCGTAGGTAAGGAGCTTCAAAAAGAAATAGAGGCTGCAGAGTTGGAGTTTAAGCAGAGACAGGAGCTTTTTGACATGATAGCAGACAACTGCTTAAATATGAAGCCACCTAACTAACAATAAGCCAGAATTAGGGCAT
CCTGATCTTTTAAAGGGTTATAGTATTGGACCTTGGTAGCCTACCACTTTCACAGATCAAGTTCCAACATTTTACTTAACTGGAGGATGTTGTGACTCATGAGCTTCTGAAACGGATTACCAGACAAAAATTTATGATCCTTATTTACATTGGATGCTGTAGTTGAAAAGAAGCGATAATGAATTTGCACATATGCACAG
CTTTTACGATGCTGCAAGTAATTAGGTTATGTTAAAAAGTCTAGATATGAAATATATGTACATCAGTCGAACTTTAGAACACAAACTGTTTTTCTTTCTATTGTGTCTAGAGAAGAAGTTTTTTGATGACCTTGATATGACTCATGAGCTTCTGAAACGAATAATATGACTCATGAGCTTCTGAAACGAATAACAGACAA
AAAAATGTGATTTATTTTTATTGGATGCTGTAGTTGAAAATAAGTGATAATGAGTTGTGCATATGCACACCTTTTACAATGCTGCAAATAATTAGATGAAGTTAAAAAAATCTTGATATAAAACGTATGTACATAAATCAATATTTAGAACACAAATTGTTCATCTTTCTTTTGTGTCTAGACTAGGGTTACCAATATTG
AATATTGTAAATATCGCGTGATTTTCAAAGAAACAATATTATTGCTCCAAAAGAATTGCGATTTATTCTTATCGGCGATATTACCGTGGGTCAATGGAAACAATCACCCCCTGTCTGCACCAATTACAATTTAAGACCCGATTTTTAGCTTCTTTCCCCTCGTTTTGAAAAACAGAGCTAGGCAATTGACAGCTGAGGAG
TTTGTCACTTTCATTGAGCTAACGAGGGGGAATTTAGTTTTTCGTCGCCATTAGTCAAGCTATTGTGGAGTGGGATCAACTCTGGTCCACCATTTCCATATTCCCAGgtatgtatgcttgtattttcttttgtttgagatttaatatagggtttgcaatatccattatatttgcttttccatcaatcagcacagAAGAAT
GCTCTAAATCAAAATCAACACAAAAGAATGCTTTGCACATCACAGCCCCAGCGCCTGCTGCTTCCAAAGGAAGAACGGTAACCTTTGCTTCTGAAAGGAATAGAGGGAATCGCTGATTCCTTAGTGTATTTATCACTTTAGAATCTAGATGACTCATGATGATGAACCATAAGATTATATTTATTGAGATACATTTATTA
TTATTTTGACGTGATTTGTATCAGCCTGCCTTTGAATTAAGTGGTGATGTATCACTTGACATTTTACACATCAGTTGTATTTCATATTTATGTGGTAATGTGGTTATTTGTGATGTGATTTGCATCAGCCTGTCAGGACTTAAGAGTCAGGATAGATATCAGAATTCAG