NA ----> NA
Intron 1 GTGGTACATT ... GCTCCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.26 | 15 | 32 | 17.6 |
| A2 | 85.16 | 4 | 24 | 22 |
| A3 | 69.5 | 14 | 37 | 27 |
| A4 | 54.65 | 12 | 16 | 13 |
| A5 | 76.65 | 8 | 31 | 21.6 |
| A6 | 60.27 | 205 | 369 | 255.8 |
| A7 | 61.77 | 206 | 361 | 309.6 |
| A8 | 59.33 | 441 | 667 | 628 |
| A9 | 62.51 | 365 | 668 | 556.2 |
| A10 | 65.71 | 208 | 495 | 303.8 |
>TRINITY_DN43014_c0_g3_i9 from sample A6 / Example spliced isoformGAAACGTGGAGAAGTTGCGAGAAATGTTGCATAATGTGTCACGCGATTAACGAATAAAACTCCGAACATATGGCCACACATTGTCGTTGTGCGTGTCGAAAGGGGTCGAAAGTCAGCCAGTGGACCCTGTCCTTACTGTAACGCAGCAGAGATTTGTGGTGATGTTGGGCCATCCACGGCAGGGAATTGCGGCTCCATAC
GTCAAAGTATTGCCTTCACTCTTAGGCGTGACGCACCCCAACTTTGAAAAACTCTTCCGTGATTCTACACGCCTCCTTTTCTCGTAGGGCCGACACTGGAGAGGCGCGCAATTGCCTCCCGAGTCACGCTATAAAATACACAGCTTAATTCTCGTTCTCACCCACACCTACAGCGTCACTGGCGTCAAAGAGCTCAACTG
GTTGTGTTGGTTTTTCTCATCGAGTTCAGAACCAGTGTTTCTTGAATACAGATGGCCTCTACAAACCTAATCCATGCGGCTCATGCGCTCCTCATCATATTGATGGCCATTGCCGTGCATAGAGTACACAGCGCCACTATGACGTGCGAGGAGCTGCCCGTGGAAGTCTGCGCTTTCTCGGTTTCGTCCTCTGGTAATAG
ATGTGTGCTCGAGAAGGCTCTAACGACGGACGACACATTGGCATTTCAATGCCAGTCGTCGGTTGTGATGGCTGAGAAATTGGTGGAATGGATTGAAAGCGAGGAGTGCATAAATGCCTGCGGCTTGGAACGGATGGCTGTGGGCATGTCTACCGATTCCCTAGTCGAACCACAATTTAGTGGGAAGTTATGCTCTTCCC
AGTGCCACAACAACTGCCCCAACATCGTCGATCTCTATGTCAATCTCGCTGCAGGAGAAGGGATATCTTTACCAAGCATGTGCGAATCTCAGAAAAGCAGTTCTCGCAAACTGATCGAGAAATCTTTGTCAAGTTCGTCAAAATCAAAGCCAGGCATCCCTTCCGACTCGTTCGCAGCCGCCCCCGGACCGGATGGCAGC
CACATAGCCGAGTTGGGAGCTTCAATTCCTGCACCCGCACCCATCTAAGATCTGGAATCGGAATTGAAGGAAAGCTTGAACCGCTTTTTAGCGAGAGAGTGAGAGACTAGCAACTTTTTACATAAGAAGTTCGTATATGTAGTCGATCTACAATATGATTGATATCAGAACCGTCGTTTTGCAATCCTCTAATATATATT
TCAATAATGATACGGCCAATTTCTGCTCTGCTCGGCTTGTTGCATGCAA
>TRINITY_DN43014_c0_g3_i12 from sample A6 / Example unspliced isoform:TTGATCTATTTCTTGTTCTTGATTTCTTGTTCTTGATCTTGATCTTGTTCTTCATTTCTTGATCTCGATCTTGATTTCTTGATCTTGATCTGTTACTCTTTGTTATATCATTTACTTCCCCTTTGTAATAGTCATTGGATTCATAGAGCTCATCCAGACCTTACTTAGTTAATATATTGGGGGGTGTTGTACTGTATTTG
TTCAGGCGCCACTATGACGTGCGAGGAGCTGCCCGTGGAAGTCTGCGCTTTCTCGGTTTCGTCCTCTGGTAATAGATGTGTGCTCGAGAAGGCTCTAACGACGGACGACACATTGGCATTTCAATGCCAGTCGTCGGTTGTGATGGCTGAGAAATTGGTGGAATGGATTGAAAGCGAGGAGTGCATAAATGCCTGCGGCT
TGGAACGGATGGCTGTGGGCATGTCTACCGATTCCCTAGTCGAACCACAATTTAGTGGGAAGTTATGCTCTTCCCAGTGCCACAACAACTGCCCCAACATCGTCGATCTCTATGTCAATCTCGCTGCAGGAGAAGGGATATCTTTACCAAGCATGTGCGAATCTCAGAAAAGCAGTTCTCGCAAACTGATCGAGAAATCT
TTGTCAAGTTCGTCAAAATCAAAGCCAGGCATCCCTTCCGACTCGTTCGCAGCCGCCCCCGGACCGGATGGCAGCCACATAGCCGAGTTGGGAGCTTCAATTCCTGCACCCGCACCCATCTAAGgtggtacattattacatacagtactgatgagtagagtatgataaataataaaactacgaacgttaaacgcgattct
gcgggtattctaagtaaatgttgcaaggaattaatgcaattttgctcccacagATCTGGAATCGGAATTGAAGGAAAGCTTGAACCGCTTTTTAGCGAGAGAGTGAGAGACTAGCAACTTTTTACATAAGAAGTTCGTATATGTAGTCGATCTACAATATGATTGATATCAGAACCGTCGTTTTGCAATCCTCTAATATA
TATTTCAATAATGATACGGCCAATTTCTGCTCTGCTCGGCTTGTTGCATGCAA
Intron 2 ATATCTGGAA ... ATATACACAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.64 | 10 | 19 | 19.2 |
| A2 | 39.73 | 22 | 16 | 13 |
| A3 | 58.06 | 13 | 16 | 20 |
| A4 | 77.78 | 2 | 7 | 7 |
| A5 | 67.21 | 10 | 19 | 22 |
| A6 | 54 | 153 | 179 | 180.2 |
| A7 | 49.01 | 150 | 146 | 142.4 |
| A8 | 52.61 | 188.2 | 194 | 224 |
| A9 | 57.18 | 207.4 | 282 | 272 |
| A10 | 60.41 | 143.4 | 236 | 201.6 |
>TRINITY_DN114760_c0_g1_i3 from sample A1 / Example spliced isoformGCTATAAAATACACAGCTTAATTCTCGTTCTCACCCACACCTACAGCGTCACTCGCGTCAAAGAGCTCAACTGGTTGTGTTGGTCTTTCTGAACAAGCTCAGAACTAGTGATTCTTGAAAAGAGATGGCCTCCACCAATTACCTCATACAAGCCGGCCATGCGCTTCTCATCATATTGATGGTCATTTCCGTGCATAGAG
TACATAGCGCCATGATGACGTGCGAGGAGCTGCCCGTGGAAGTCTGCGCTTTCTCGGTTTCGTCCTCTGGCAATAGATGTGTGCTCGAGAAAGCTCTAATGATGGACGGCACCATGCAATTTCAATGCCAGTCGTCGGTTGTGATGGCCGAGAAATTGGTGGAATGGATCGAAAGCGAGGAGTGCATAAATGCCTGCGGC
TTGGAACGGATGGTTGTGGGCATGTCTACAGATTCTCTACTCGAACCGCAATTTAGTGGGAAGTTATGCTCTTCCCAGTGCCGCGACAACTGCCACAACATCGTTGATCTCTATGCCAATCTCGCTGCGGGAGAAGGAATATCTTTACCGAGAATGTGCGACTCTCAGAAAAGCAGATCTCGCATTCTGATCGCGGAATC
TCTGTCAAGCTATTCAAAGTCAAAGTCAAGAAGCATCCATTCCGAGTCGTTTGAAGCCCCGGCACCGTTTGGCAGCCACATACTGGAGTTGGGAGCTGTTCCTGCACCCGCACCCATCTAAGATCATTCTACAGATACCTCTCCTTTGTCCAATGCTGAGTTAATTTGGAGTAAAGTAAGGAAATTTTATTATTCCGTTC
CCACATTAGAAATGCCTCCTAGAAGAATAGTGAGAGACTAGCAGCTTTCTACATAAGAAGTTCCTATGTATACGGGTCTACAGTATATTTGATATAATTATGGGGTTATATAATAAGTTCCTATGTGAAGGTTTTACGATCTCAAATGTTTAATTCACTTCTACGGGCAGTTTCAGCTCCGAACAGATTCGATTGTGTGT
GTTTGTTGTGTATGTAAGTTTGAATTCACATTAGAAAGGGAAGGGAAGGTTGAAGCACGTCTCACCAACATCTTGACGCTCCAATTTCCAAACAGTGGAAAACGCGTCCAACGATTGTCGGGGAGTCGGTCATGTATGCACGAATTGCGATATATAATATTCGGG
>TRINITY_DN114760_c0_g1_i2 from sample A1 / Example unspliced isoform:GCTATAAAATACACAGCTTAATTCTCGTTCTCACCCACACCTACAGCGTCACTCGCGTCAAAGAGCTCAACTGGTTGTGTTGGTCTTTCTGAACAAGCTCAGAACTAGTGATTCTTGAAAAGAGATGGCCTCCACCAATTACCTCATACAAGCCGGCCATGCGCTTCTCATCATATTGATGGTCATTTCCGTGCATAGAG
TACATAGCGCCATGATGACGTGCGAGGAGCTGCCCGTGGAAGTCTGCGCTTTCTCGGTTTCGTCCTCTGGCAATAGATGTGTGCTCGAGAAAGCTCTAATGATGGACGGCACCATGCAATTTCAATGCCAGTCGTCGGTTGTGATGGCCGAGAAATTGGTGGAATGGATCGAAAGCGAGGAGTGCATAAATGCCTGCGGC
TTGGAACGGATGGTTGTGGGCATGTCTACAGATTCTCTACTCGAACCGCAATTTAGTGGGAAGTTATGCTCTTCCCAGTGCCGCGACAACTGCCACAACATCGTTGATCTCTATGCCAATCTCGCTGCGGGAGAAGGAATATCTTTACCGAGAATGTGCGACTCTCAGAAAAGCAGATCTCGCATTCTGATCGCGGAATC
TCTGTCAAGCTATTCAAAGTCAAAGTCAAGAAGCATCCATTCCGAGTCGTTTGAAGCCCCGGCACCGTTTGGCAGCCACATACTGGAGTTGGGAGCTGTTCCTGCACCCGCACCCATCTAAGATCATTCTACAGATACCTCTCCTTTGTCCGATGCCGAGTTAATTTGGAGTAAAGTAAGGAAATTTTATTATTCCGTTC
CCACatatctggaatcggtattaaaaaaagcttgaatgttttttgaagctgggtagtccagattgagcatatacacacATTAGAAATGCCTCCTAGAAGAATAGTGAGAGACTAGCAGCTTTCTACATAAGAAGTTCCTATGTATACGGGTCTACAGTATATTTGATATAATTATGGGGTTATATAATAAGTTCCTATGT
GAAGGTTTTACGATCTCAAATGTTTAATTCACTTCTACGGGCAGTTTCAGCTCCGAACAGATTCGATTGTGTGTGTTTGTTGTGTATGTAAGTTTGAATTCACATTAGAAAGGGAAGGGAAGGTTGAAGCACGTCTCACCAACATCTTGACGCTCCAATTTCCAAACAGTGGAAAACGCGTCCAACGATTGTCGGGGAGT
CGGTCATGTATGCACGAATTGCGATATATAATATTCGGG