NA ----> NA
Intron 1 GCAGAAGAGA ... CCCAAGCGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.73 | 6 | 9 | 20 |
| A2 | 64.71 | 9 | 14 | 19 |
| A3 | 76.67 | 7 | 16 | 30 |
| A4 | 74.36 | 5 | 11 | 18 |
| A5 | 80 | 4 | 11 | 21 |
| A6 | 73.77 | 40 | 68 | 157 |
| A7 | 64.89 | 33 | 41 | 81 |
| A8 | 70.62 | 31 | 46 | 103 |
| A9 | 72.68 | 28 | 42 | 107 |
| A10 | 66.67 | 20 | 26 | 54 |
>TRINITY_DN44542_c0_g1_i5 from sample A10 / Example spliced isoformGGCACGTTCTTTACCAAGGTGGGTTTTGTTCGAATTCGAACTTGTAATCACGATCACAAGTCCATTGCTCGTTAATCTGACCGTATGAAGGCTTCATCGAAGCCGACTTCATTTGCGTAAACTTGGGGTTTTATTCAATGGAGGCGTTCAAAATCTATAGGAATCTCTTGAGGGCAGTGCAGACACACATTGATAATGCC
AATAAAACACACTTCCGAGAATATATCATGGCGGAGTTCAGAAAGAATAAAGATCCTGAGGACTCTGCCTTTGTTCAACAGAAGCTGCAGCTTGCACATAATTATGCTCTACAGCTTAGTAGTATTCACCATCATAAGGATCTCCTATTATCTTACAATATTGCCATAGATCGGGAAGCAGAAAAGAAGTTGACACTGGA
AAGATCAGCTGCAAGTGTTGGACTTAAACTTCCAAAACCTTATGATGATTAATATCACAAAGCCTCATGTAGATGCATGCTCATAAAACTTTGATCTACAGGGAGATGAGCTTTGAATGGTGGATGGAATTCATGGATACCTTTTAAATATGCTGACATGAAACAATTAATGCAGAATAGAGATATGGTTGCTTTGAAAC
CATATCAAATGTGCATATATGTTTAGATTGTTCTCTTGCACTGTAATCCACATGCTGTAGCCATGACAAGCTTGTCTATGTCCTTTTATTTACTAGTTTGTTTAGAGGAAAGAACCCATCAATTTTTATGGACCAAAGGTCACAGACATTATATTCTACATCACCAAATAATGAAAATCACACATCTCATCCATCTGTTA
TTCCTTATTCCCAACTTATAGATGAGTCTTCTTACATCCTCCCCACTCAACTATTTTACACTAAAGTTTCTGCTACTTTCAAACCTCATTAATGCCTTCCCAAAAGGGGCTAGCTTGCAGGCTATACACTGTCAGGTGTGAATTTGTTGAATCACTTGAAGCTATTGTTTGAATTCAATTTTCATTTTCAGTCCAATGAA
AATAAGGAAACTGCAAATTTCATTGAGTAGATTATTGCAGAAGGCTTCCTCTTCAACCTAAACCGTATGACCTCGTCCTTACACCAAAGTGTCGTATTTTTTTATCTGTTTTTTGAATTTTCTGAAGATAAATATTGAAGTACTAGTAAACATTTCCATTATTTCATTTTATACATATTAAAGAACTATCTTTCTATATA
CATTTGAAGCAAATGCTTTATCTTGGAG
>TRINITY_DN44542_c0_g1_i2 from sample A10 / Example unspliced isoform:GGCACGTTCTTTACCAAGGTGGGTTTTGTTCGAATTCGAACTTGTAATCACGATCACAAGTCCATTGCTCGTTAATCTGACCGTATGAAGGCTTCATCGAAGCCGACTTCATTTGCgcagaagagaaccgatgatagatcgcccgactgtgtttaattacctcagcaagactgtaattttgtggtttccctagaatttca
gaaattccatgaaaacccccgtcattcccaagcgagGTAAACTTGGGGTTTTATTCAATGGAGGCGTTCAAAATCTATAGGAATCTCTTGAGGGCAGTGCAGACACACATTGATAATGCCAATAAAACACACTTCCGAGAATATATCATGGCGGAGTTCAGAAAGAATAAAGATCCTGAGGACTCTGCCTTTGTTCAACA
GAAGCTGCAGCTTGCACATAATTATGCTCTACAGCTTAGTAGTATTCACCATCATAAGGATCTCCTATTATCTTACAATATTGCCATAGATCGGGAAGCAGAAAAGAAGTTGACACTGGAAAGATCAGCTGCAAGTGTTGGACTTAAACTTCCAAAACCTTATGATGATTAATATCACAAAGCCTCATGTAGATGCATGC
TCATAAAACTTTGATCTACAGGGAGATGAGCTTTGAATGGTGGATGGAATTCATGGATACCTTTTAAATATGCTGACATGAAACAATTAATGCAGAATAGAGATATGGTTGCTTTGAAACCATATCAAATGTGCATATATGTTTAGATTGTTCTCTTGCACTGTAATCCACATGCTGTAGCCATGACAAGCTTGTCTATG
TCCTTTTATTTACTAGTTTGTTTAGAGGAAAGAACCCATCAATTTTTATGGACCAAAGGTCACAGACATTATATTCTACATCACCAAATAATGAAAATCACACATCTCATCCATCTGTTATTCCTTATTCCCAACTTATAGATGAGTCTTCTTACATCCTCCCCACTCAACTATTTTACACTAAAGTTTCTGCTACTTTC
AAACCTCATTAATGCCTTCCCAAAAGGGGCTAGCTTGCAGGCTATACACTGTCAGGTGTGAATTTGTTGAATCACTTGAAGCTATTGTTTGAATTCAATTTTCATTTTCAGTCCAATGAAAATAAGGAAACTGCAAATTTCATTGAGTAGATTATTGCAGAAGGCTTCCTCTTCAACCTAAACCGTATGACCTCGTCCTT
ACACCAAAGTGTCGTATTTTTTTATCTGTTTTTTGAATTTTCTGAAGATAAATATTGAAGTACTAGTAAACATTTCCATTATTTCATTTTATACATATTAAAGAACTATCTTTCTATATACATTTGAAGCAAATGCTTTATCTTGGAG
Intron 2 GTTACTATTA ... GTATCACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.57 | 20 | 5 | 6 |
| A2 | 44.93 | 19 | 5 | 26 |
| A3 | 20 | 30 | 10 | 5 |
| A4 | 28 | 18 | 6 | 8 |
| A5 | 27.59 | 21 | 13 | 3 |
| A6 | 21.95 | 156.5 | 40 | 48 |
| A7 | 25.35 | 81 | 28 | 27 |
| A8 | 28.47 | 103 | 50 | 32 |
| A9 | 25.69 | 107 | 39 | 35 |
| A10 | 26.03 | 54 | 19 | 19 |
>TRINITY_DN44542_c0_g1_i2 from sample A10 / Example spliced isoformGGCACGTTCTTTACCAAGGTGGGTTTTGTTCGAATTCGAACTTGTAATCACGATCACAAGTCCATTGCTCGTTAATCTGACCGTATGAAGGCTTCATCGAAGCCGACTTCATTTGCGCAGAAGAGAACCGATGATAGATCGCCCGACTGTGTTTAATTACCTCAGCAAGACTGTAATTTTGTGGTTTCCCTAGAATTTCA
GAAATTCCATGAAAACCCCCGTCATTCCCAAGCGAGGTAAACTTGGGGTTTTATTCAATGGAGGCGTTCAAAATCTATAGGAATCTCTTGAGGGCAGTGCAGACACACATTGATAATGCCAATAAAACACACTTCCGAGAATATATCATGGCGGAGTTCAGAAAGAATAAAGATCCTGAGGACTCTGCCTTTGTTCAACA
GAAGCTGCAGCTTGCACATAATTATGCTCTACAGCTTAGTAGTATTCACCATCATAAGGATCTCCTATTATCTTACAATATTGCCATAGATCGGGAAGCAGAAAAGAAGTTGACACTGGAAAGATCAGCTGCAAGTGTTGGACTTAAACTTCCAAAACCTTATGATGATTAATATCACAAAGCCTCATGTAGATGCATGC
TCATAAAACTTTGATCTACAGGGAGATGAGCTTTGAATGGTGGATGGAATTCATGGATACCTTTTAAATATGCTGACATGAAACAATTAATGCAGAATAGAGATATGGTTGCTTTGAAACCATATCAAATGTGCATATATGTTTAGATTGTTCTCTTGCACTGTAATCCACATGCTGTAGCCATGACAAGCTTGTCTATG
TCCTTTTATTTACTAGTTTGTTTAGAGGAAAGAACCCATCAATTTTTATGGACCAAAGGTCACAGACATTATATTCTACATCACCAAATAATGAAAATCACACATCTCATCCATCTGTTATTCCTTATTCCCAACTTATAGATGAGTCTTCTTACATCCTCCCCACTCAACTATTTTACACTAAAGTTTCTGCTACTTTC
AAACCTCATTAATGCCTTCCCAAAAGGGGCTAGCTTGCAGGCTATACACTGTCAGGTGTGAATTTGTTGAATCACTTGAAGCTATTGTTTGAATTCAATTTTCATTTTCAGTCCAATGAAAATAAGGAAACTGCAAATTTCATTGAGTAGATTATTGCAGAAGGCTTCCTCTTCAACCTAAACCGTATGACCTCGTCCTT
ACACCAAAGTGTCGTATTTTTTTATCTGTTTTTTGAATTTTCTGAAGATAAATATTGAAGTACTAGTAAACATTTCCATTATTTCATTTTATACATATTAAAGAACTATCTTTCTATATACATTTGAAGCAAATGCTTTATCTTGGAG
>TRINITY_DN44542_c0_g1_i7 from sample A10 / Example unspliced isoform:ACGTATCCCATTTCTCATTGAGTTCATCCCAGCTATTTTTAACTCGGGGTTCGTGCAGATTCACCTTAATAATGATTGCAGAGATAAATTTCATAGCCGCTTAGAATTTTATTTTCGCACCACAGGCAGAAGAGAACCGATGATAGATCGCCCGACTGTGTTTAATTACCTCAGCAAGACTGTAATTTTGTGGTTTCCCT
AGAATTTCAGAAATTCCATGAAAACCCCCGTCATTCCCAAGCGAGgttactattatgtgtagttacaactttgggtggtttctcaaaatgtgaaaatagaaacttagtcgaaactagttcctaaaattgtgaagctatagacattcccgaggaaaaggtcaaatactgagtggagcttgttacactgagaatttaaatac
ttgctatacacaatgactagaatatggagaagttgaaacaggacaagctgctagcaaccaaagattgcaggattctacaaggtatcacaagGTAAACTTGGGGTTTTATTCAATGGAGGCGTTCAAAATCTATAGGAATCTCTTGAGGGCAGTGCAGACACACATTGATAATGCCAATAAAACACACTTCCGAGAATATA
TCATGGCGGAGTTCAGAAAGAATAAAGATCCTGAGGACTCTGCCTTTGTTCAACAGAAGCTGCAGCTTGCACATAATTATGCTCTACAGCTTAGTAGTATTCACCATCATAAGGATCTCCTATTATCTTACAATATTGCCATAGATCGGGAAGCAGAAAAGAAGTTGACACTGGAAAGATCAGCTGCAAGTGTTGGACTT
AAACTTCCAAAACCTTATGATGATTAATATCACAAAGCCTCATGTAGATGCATGCTCATAAAACTTTGATCTACAGGGAGATGAGCTTTGAATGGTGGATGGAATTCATGGATACCTTTTAAATATGCTGACATGAAACAATTAATGCAGAATAGAGATATGGTTGCTTTGAAACCATATCAAATGTGCATATATGTTTA
GATTGTTCTCTTGCACTGTAATCCACATGCTGTAGCCATGACAAGCTTGTCTATGTCCTTTTATTTACTAGTTTGTTTAGAGGAAAGAACCCATCAATTTTTATGGACCAAAGGTCACAGACATTATATTCTACATCACCAAATAATGAAAATCACACATCTCATCCATCTGTTATTCCTTATTCCCAACTTATAGATGA
GTCTTCTTACATCCTCCCCACTCAACTATTTTACACTAAAGTTTCTGCTACTTTCAAACCTCATTAATGCCTTCCCAAAAGGGGCTAGCTTGCAGGCTATACACTGTCAGGTGTGAATTTGTTGAATCACTTGAAGCTATTGTTTGAATTCAATTTTCATTTTCAGTCCAATGAAAATAAGGAAACTGCAAATTTCATTG
AGTAGATTATTGCAGAAGGCTTCCTCTTCAACCTAAACCGTATGACCTCGTCCTTACACCAAAGTGTCGTATTTTTTTATCTGTTTTTTGAATTTTCTGAAGATAAATATTGAAGTACTAGTAAACATTTCCATTATTTCATTTTATACATATTAAAGAACTATCTTTCTATATACATTTGAAGCAAATGCTTTATCTTG
GAG
Intron 3 GTATTGTTCT ... GGGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.98 | 21 | 9.5 | 4.5 |
| A2 | 7.55 | 24 | 1 | 3 |
| A3 | 10.44 | 27 | 5.5 | 1 |
| A4 | 9.09 | 15 | 2 | 1 |
| A5 | 0 | 12 | 0 | 0 |
| A6 | 4.93 | 64 | 5.5 | 1.5 |
| A7 | 5.68 | 79 | 8.5 | 1.5 |
| A8 | 5.21 | 73 | 5 | 3.5 |
| A9 | 5.98 | 81 | 7.5 | 3.5 |
| A10 | 5.38 | 58 | 5.5 | 1.5 |
>TRINITY_DN119350_c0_g1_i2 from sample A1 / Example spliced isoformAAACATTCAATAAGCCATATCACATTCAATTTTTACAATGCGGGAGGCAGTATAACACAAAACCGACATAAACAATAGAGCAAATGTAAGAAGGCGGAGGTCGATGTCCTGCGCATTCCAACTGGTGATCGCGATGAAAAATCCATTGCAGGTGAACCCGGGCCTATAAAAGCTTCCTTCGAAGCCGATTCCATTGTTAG
GATTGCCAGATGGCAATCTCAACCCTGGAACTCCATTTGCAAGATATCTATGAAGGCAGCTTTGAACTTTGAGCACGTAAAGTTGCAGTTTGATTCAATGGAGGCATTCAGAATCTATAGGACTCTCTTGAGGGCAGTGCGTACACATATTGGTTATGCCAATAAAACACATTTCCAAGAATATATCATGGCAGAGTTCA
GAAAGAATAAAGATATTCAGGACTCTTCCTTTGTTCAACAGAAGCTGAAGCTTGCGCAGAATTATGCGTTACTGCTTAATAGTGTCCACCATCATAAGGATCTACTATTCTCTTACAACATTGCCATAGATCGGGAAGAAGAAAAGAAGTTGACACTGAAAAGATCAGCTGCAAGTGTTGGACTCCAGCTTCCACAATCT
TACAAGGATTAAGTTCACTATGCTTTTTATAGGGAATGTCAGATGAAATTCATGGATACTTTCTAAATATGTTGACATCAAACAGTTAATGCAGAAGGAAGATGTGGTTGCCTTTAGATTTATCTCTTGCACTGTAAGCAAGCTTGTGTATGTGCTTTTATATACTAGTTCGTTTAGAGGATAGAAAGTGTTAATTTTCC
AAAGACTACAGATATCATATTCTACGTCACTAAACGATGAAGATCATACATCTCATCCACCTGTTATTTTTTTTCCCAAGCTATAGATATCATATTCTACGTCACTAAACGATGAAGATCATACATCTCATCCACCTGTAATGCAGCCATTTTACACTAAGTTTCTGCTACTTTAAAACCTCATTAATACCCAAAACGGG
CTAGTTTGCAAAAAA
>TRINITY_DN119350_c0_g1_i1 from sample A1 / Example unspliced isoform:AAACATTCAATAAGCCATATCACATTCAATTTTTACAATGCGGGAGGCAGTATAACACAAAACCGACATAAACAATAGAGCAAATGTAAGAAGGCGGAGGTCGATGTCCTGCGCATTCCAACTGGTGATCGCGATGAAAAATCCATTGCAGGTGAACCCGGGCCTATAAAAGCTTCCTTCGAAGCCGATTCCATTGTTAG
GATTGCCAGATGGCAATCTCAACCCTGGAACTCCATTTGCAAGATATCTATGgtattgttctttactgaccaccataattccaagtctcatttaaaatttttacttgttaagatattagctttgaacttcattctgaaatttcttacttcctcataaaatgaacactgatgtgatcttgggcttgcagAAGGCAGCTTTG
AACTTTGAGCACGTAAGTTGCAGTTTGATTCAATGGAGGCATTCAGAATCTATAGGACTCTCTTGAGGGCAGTGCGTACACATATTGGTTATGCCAATAAAACACATTTCCAAGAATATATCATGGCAGAGTTCAGAAAGAATAAAGATATTCAGGACTCTTCCTTTGTTCAACAGAAGCTGAAGCTTGCGCAGAATTAT
GCGTTACTGCTTAATAGTGTCCACCATCATAAGGATTTACTATTCTCTTACAACATTGCCATAGATCGGGAAGCAGAAAATAAGTTGACACTGAAAAGATCAGCTGCAAGTGTTGGACTCCAGCTTCCACAATCTTACAAGGATTAAGTTCACTATGCTTTTTAGAGATGAGTTTGGAGATTTTATCCAGCACATACCTA
TTCCAATTATTCTTCTATCCTGCACAAACCTATTGAAATTGTTCTCCTATTTTGTTTATTACCTATTCAAAGTATACAAAGCGTGCTCATAAAATTTTGATTTATAGGGAATGTCAGATGAAATTCATGGATACTTTCTAAATATGTTGACATCAAACAGTTAATGCAGAAGGAAGATGTGGTTGCCTTTAGATTTATCT
CTTGCACTGTAAGCAAGCTTGTGTATGTGCTTTTATATACTAGTTCGTTTAGAGGATAGAAAGTGTTAATTTTCCAAAGACTACAGATATCATATTCTACGTCACTAAACGATGAAGATCATACATCTCATCCACCTGTTATTTTTTTTCCCAAGCTATAGATATCATATTCTACGTCACTAAACGATGAAGATCATACA
TCTCATCCACCTGTAATGCAGCCATTTTACACTAAGTTTCTGCTACTTTAAAACCTCATTAATACCCAAAACGGGCTAGTTTGCAAAAAA