sp|Q9LPC4|PPR1_ARATH ----> Pentatricopeptide repeat-containing protein At1g01970
Intron 1 GTAAGTTCAA ... CTTCTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.42 | 7 | 15 | 33 |
| A2 | 70.15 | 10 | 24 | 23 |
| A3 | 70.73 | 6 | 15 | 14 |
| A4 | 93.94 | 1 | 19 | 12 |
| A5 | 59.09 | 9 | 13 | 13 |
| A6 | 76.47 | 6 | 13 | 26 |
| A7 | 81.31 | 10 | 34 | 53 |
| A8 | 58.33 | 10 | 9 | 19 |
| A9 | 77.55 | 11 | 33 | 43 |
| A10 | 69.64 | 17 | 35 | 43 |
>TRINITY_DN42922_c6_g1_i1 from sample A6 / Example spliced isoformGTAAAATATAGCTTAAGAATAGGCGCTTTATTCAAGGAGGGAATTAGACGGATAAGGAGCGTCGAAGTTCAGAAGCATTCTTTCCTGAAGTTCCTACAGTGGAGAATAACAGAAATTGCTCTCAGGGAAGAATCATTTGAAGCCAACATTCGTGATTATACCAAACTTATAGATGCCTATGCAAGGAAAGGCAATTTGAC
AGATGCTGAAAGGGTACTAAGGACCATGGAGGAGAGGGGTTTCATATGTGATGAAATTACATTTACAGTACTAATCCAAATGTACAGTAAGACAGGGAATCTTGATCGTGCTAAACAAATATTTGACAAGATGAGGCTATCAGTTCTTAACCTGGATCAGAAAGCATATGGCTCAATGGTTATGGCTTATGTGAGAGCAG
GATTGCCTGAAGCAGGAGTGTCTTTGATGAGAGAGATGGAATCCAAGAGTATTACTGCAGGCAAAGAAGTGTATAAGGCATTGCTGAAGTCTTTTGCTCGCCAGGGTAATGCTAATAGTGCCCAAAGGATGTTCAATAGTATGCAGTTTGCTGGCATTGTGCCGAATCTCAACTCTTGTACTATACTGTTGGAGGCTTAT
GCCCATGCTGGTGACCCAGACCAGGCTAGAAGTGTTTTTGAAAATATAATAAAATCTGGCCAGAAGCCAGATGATAAATGTACATCTGTCATGGTCTATGCATATGAAAAAAAGAATTTACTTGGCAAGGCACTAAGCTTGCTATTGGACCTTGAAAAGGATGGCTTCAAACCAGGAGATGAAACTTTGGCCGTTTTAAT
TGACTGGCTTGGTAAGTTAGGGTTGGTTGAGGAGGCAGAACAACTTTTTGATGAGATAGCTAAAACAGAAGTTCCCTCAAAAATTCTTGTAAGCCTCTGGGAAATGTATGCTAGGGCAGGCCTGCAAGAAAAAGCAGCACACACTTTGGGCCTTTTGCAAAAGAATTCTCAAGCCTTGAATGTGAATGGCTTTGAAAGGT
TGATAAGTGGCCTTTTAGCTGGTGGTTTTGTAGACGAAGCAAAGAAGATGCATGACCAAATGCGAATTCAAGGGCTGACTCCACCAGAACCTATTGCAGTCGCATTAACACCCTGCTCACCCTGCTCAAGGCATCTTACATAGCAACCTTGTGCCAATGGAACATACAAATCAAGGGACTCTTGGTCTTTTGGTACTTTA
ATGTCCAAAGCTAAATTCAATGTTCTTGTTGCAGGCTTGTCCTGACTGCACCAACAATCTTTCTTATTGAGATCTTATGTGTTTGGCCACTGTTTGATATGGATGTGGAAGAAATGGGACGTCAAGACAAAATAGAACATTTATTCTATGTCTATGGTGATTAGTTATTAGTGTAGTCCTCGAATCCAGGCTGTTTACAG
AATTCTGCAGTTGACAATGTATTCATATGTTTTGATAGAAATATGGCTACTTGCCTTGTATTTACTATTTAAAAGGACCTTTTGATTTGTTCTTTTATCTACCTTTTATCCCCAAAAGATGGATCACATTAATTAGTTCTCACATTGCTGCAGAACCTGGAGGGTAATGGCACATGTCCAGGAACAATAATTTTGAATTG
AAAACTGGACAACCTGTGGAATAAAATTGCGATTGGACTGCT
>TRINITY_DN42922_c6_g1_i2 from sample A6 / Example unspliced isoform:GTAAAATATAGCTTAAGAATAGGCGCTTTATTCAAGGAGGGAATTAGACGGATAAGGAGCGTCGAAGTTCAGAAGCATTCTTTCCTGAAGTTCCTACAGTGGAGAgtaagttcaacgcacgtcaccgaatttcattttgcttggtgtaatgtttaaggttcaatgtggttgagataaactgctcgcttcatctacatcac
tgtattaatggaagcagttttttatcctcaaacacaaccgtcttattgcaaacgagttcttacacagccactgcactcttccccgcgttccatcatcttctccaccacaagaagaagacgaaatgcagcttattctcaatgcaaggtcattgtttcttcacagtggtctactggagggcctctcagaaaattatattctc
gatcctctgcactccgaccttgttgccaccgacacccattaagcacagcagcagcagcaacagaagaagaaaaatattatgaggtcgaggttgaagacacagaggacgaatccgattcggatggcggggaagagaaatacactcagcaagtaaagggcaagggattaaggtggactgatgtaggcgacaatggattagac
aagacgcaaaaaagcctcatagaagcactgcctccaaagatgtctggaaggagcaaggccctgatgaagcatataatttgtctatcagaagaggatgacccatctgaactaatcatgaaatgggtcagaatcatgaagcccaaaagagtagattggcttgcagtcctcaaacagatggaggaacagaacctcaaccatcc
tctcttcttcaagATAACAGAAATTGCTCTCAGGGAAGAATCATTTGAAGCCAACATTCGTGATTATACCAAACTTATAGATGCCTATGCAAGGAAAGGCAATTTGACAGATGCTGAAAGGGTACTAAGGACCATGGAGGAGAGGGGTTTCATATGTGATGAAATTACATTTACAGTACTAATCCAAATGTACAGTAAGA
CAGGGAATCTTGATCGTGCTAAACAAATATTTGACAAGATGAGGCTATCAGTTCTTAACCTGGATCAGAAAGCATATGGCTCAATGGTTATGGCTTATGTGAGAGCAGGATTGCCTGAAGCAGGAGTGTCTTTGATGAGAGAGATGGAATCCAAGAGTATTACTGCAGGCAAAGAAGTGTATAAGGCATTGCTGAAGTCT
TTTGCTCGCCAGGGTAATGCTAATAGTGCCCAAAGGATGTTCAATAGTATGCAGTTTGCTGGCATTGTGCCGAATCTCAACTCTTGTACTATACTGTTGGAGGCTTATGCCCATGCTGGTGACCCAGACCAGGCTAGAAGTGTTTTTGAAAATATAATAAAATCTGGCCAGAAGCCAGATGATAAATGTACATCTGTCAT
GGTCTATGCATATGAAAAAAAGAATTTACTTGGCAAGGCACTAAGCTTGCTATTGGACCTTGAAAAGGATGGCTTCAAACCAGGAGATGAAACTTTGGCCGTTTTAATTGACTGGCTTGGTAAGTTAGGGTTGGTTGAGGAGGCAGAACAACTTTTTGATGAGATAGCTAAAACAGAAGTTCCCTCAAAAATTCTTGTAA
GCCTCTGGGAAATGTATGCTAGGGCAGGCCTGCAAGAAAAAGCAGCACACACTTTGGGCCTTTTGCAAAAGAATTCTCAAGCCTTGAATGTGAATGGCTTTGAAAGGTTGATAAGTGGCCTTTTAGCTGGTGGTTTTGTAGACGAAGCAAAGAAGATGCATGACCAAATGCGAATTCAAGGGCTGACTCCACCAGAACCT
ATTGCAGTCGCATTAACACCCTGCTCACCCTGCTCAAGGCATCTTACATAGCAACCTTGTGCCAATGGAACATACAAATCAAGGGACTCTTGGTCTTTTGGTACTTTAATGTCCAAAGCTAAATTCAATGTTCTTGTTGCAGGCTTGTCCTGACTGCACCAACAATCTTTCTTATTGAGATCTTATGTGTTTGGCCACTG
TTTGATATGGATGTGGAAGAAATGGGACGTCAAGACAAAATAGAACATTTATTCTATGTCTATGGTGATTAGTTATTAGTGTAGTCCTCGAATCCAGGCTGTTTACAGAATTCTGCAGTTGACAATGTATTCATATGTTTTGATAGAAATATGGCTACTTGCCTTGTATTTACTATTTAAAAGGACCTTTTGATTTGTTC
TTTTATCTACCTTTTATCCCCAAAAGATGGATCACATTAATTAGTTCTCACATTGCTGCAGAACCTGGAGGGTAATGGCACATGTCCAGGAACAATAATTTTGAATTGAAAACTGGACAACCTGTGGAATAAAATTGCGATTGGACTGCT
Intron 2 GTAAGTTCAA ... ATGGAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.29 | 9 | 15 | 37 |
| A2 | 85.45 | 4 | 24 | 23 |
| A3 | 94.44 | 1 | 15 | 19 |
| A4 | 91.49 | 2 | 19 | 24 |
| A5 | 92.31 | 1 | 13 | 11 |
| A6 | 93.33 | 1 | 13 | 15 |
| A7 | 84.25 | 10 | 34 | 73 |
| A8 | 72.22 | 5 | 9 | 17 |
| A9 | 72.41 | 16 | 33 | 51 |
| A10 | 92.31 | 4 | 35 | 61 |
>TRINITY_DN31468_c0_g1_i1 from sample A9 / Example spliced isoformGGGGAAAGTAAAATATAGCTTAAGAATAGGCGCTTTATTCAAGGAGGGAATTAGACGGATAAGGAGCGTCGAAGTTCAGAAGCATTCTTTCCTGAAGTTCCTACAGTGGAGATTTTTTATCCTCAAACACAACCGTCTTATTGCAAACGAGTTCTTACACAGCCACTGCACTCTTCCCCGCGTTCCATCATCTTCTCCAC
CACAAGAAGAAGACGAAATGCAGCTTATTCTCAATGCAAGGTCATTGTTTCTTCACAGTGGTCTACTGGAGGGCCTCTCAGAAAATTATATTCTCGATCCTCTGCACTCCGACCTTGTTGCCACCGACACCCATTAAGCACAGCAGCAGCAGCAACAGAAGAAGAAAAATATTATGAGGTCGAGGTTGAAGACACAGAGG
ACGAATCCGATTCGGATGGCGGGGAAGAGAAATACACTCAGCAAGTAAAGGGCAAGGGATTAAGGTGGACTGATGTAGGCGACAATGGATTAGACAAGACGCAAAAAAGCCTCATAGAAGCACTGCCTCCAAAGATGTCTGGAAGGAGCAAGGCCCTGATGAAGCATATAATTTGTCTATCAGAAGAGGATGACCCATCT
GAACTAATCATGAAATGGGTCAGAATCATGAAGCCCAAAAGAGTAGATTGGCTTGCAGTCCTCAAACAGATGGAGGAACAGAACCTCAACCATCCTCTCTTCTTCAAGATAACAGAAATTGCTCTCAGGGAAGAATCATTTGAAGCCAACATTCGTGATTATACCAAACTTATAGATGCCTATGCAAGGAAAGGCAATTT
GACAGATGCTGAAAGGGTACTAAGGACCATGGAGGAGAGGGGTTTCATATGTGATGAAATTACATTTACAGTACTAATCCAAATGTACAGTAAGACAGGGAATCTTGATCGTGCTAAACAAATATTTGACAAGATGAGGCTATCAGTTCTTAACCTGGATCAGAAAGCATATGGCTCAATGGTTATGGCTTATGTGAGAG
CAGGATTGCCTGAAGCAGGAGTGTCTTTGATGAGAGAGATGGAATCCAAGAGTATTACTGCAGGCAAAGAAGTGTATAAGGCATTGCTGAAGTCTTTTGCTCGCCAGGGTAATGCTAATAGTGCCCAAAGGATGTTCAATAGTATGCAGTTTGCTGGCATTGTGCCGAATCTCAACTCTTGTACTATACTGTTGGAGGCT
TATGCCCATGCTGGTGACCCAGACCAGGCTAGAAGTGTTTTTGAAAATATAATAAAATCTGGCCAGAAGCCAGATGATAAATGTACATCTGTCATGGTCTATGCATATGAAAAAAAGAATTTACTTGGCAAGGCACTAAGCTTGCTATTGGACCTTGAAAAGGATGGCTTCAAACCAGGAGATGAAACTTTGGCCGTTTT
AATTGACTGGCTTGGTAAGTTAGGGTTGGTTGAGGAGGCAGAACAACTTTTTGATGAGATAGCTAAAACAGAAGTTCCCTCAAAAATTCTTGTAAGCCTCTGGGAAATGTATGCTAGGGCAGGCCTGCAAGAAAAAGCAGCACACACTTTGGGCCTTTTGCAAAAGAATTCTCAAGCCTTGAATGTGAATGGCTTTGAAA
GGTTGATAAGTGGCCTTTTAGCTGGTGGTTTTGTAGACGAAGCAAAGAAGATGCATGACCAAATGCGAATTCAAGGGCTGACTCCACCAGAACCTATTGCAGTCGCATTAACACCCTGCTCACCCTGCTCAAGGCATCTTACATAGCAACCTTGTGCCAATGGAACATACAAATCAAGGGACTCTTGGTCTTTTGGTACT
TTAATGTCCAAAGCTAAATTCAATGTTCTTGTTGCAGGCTTGTCCTGACTGCACCAACAATCTTTCTTATTGAGATCTTATGTGTTTGGCCACTGTTTGATATGGATGTGGAAGAAATGGGACGTCAAGACAAAATAGAACATTTATTCTATGTCTATGGTGATTAGTTATTAGTGTAGTCCTCGAATCCAGGCTGTTTA
CAGAATTCTGCAGTTGACAATGTATTCATATGTTTTGATAGAAATATGGCTACTTGCCTTGTATTTACTATTTAAAAGGACCTTTTGATTTGTTCTTTTATCTACCTTTTATCCCCAAAAGATGGATCACATTAATTAGTTCTCACATTGCTGCAGAACCTGGAGGGTAATGGCACATGTCCAGGAACAATAATTTTGAA
TTGAAAACTGGACAACCTGTGGAATAAAATTGCGATTGGACTGCTAAAATTTGTTTGTAAAATCATCATATGCTAAAAGACATGTGACAACATTACAGCTCTGCAGGAGTGATAGTGG
>TRINITY_DN31468_c0_g1_i3 from sample A9 / Example unspliced isoform:GGGGAAAGTAAAATATAGCTTAAGAATAGGCGCTTTATTCAAGGAGGGAATTAGACGGATAAGGAGCGTCGAAGTTCAGAAGCATTCTTTCCTGAAGTTCCTACAGTGGAGAgtaagttcaacgcacgtcaccgaatttcattttgcttggtgtaatgtttaaggttcaatgtggttgagataaactgctcgcttcatct
acatcactgtattaatggaagcagTTTTTTATCCTCAAACACAACCGTCTTATTGCAAACGAGTTCTTACACAGCCACTGCACTCTTCCCCGCGTTCCATCATCTTCTCCACCACAAGAAGAAGACGAAATGCAGCTTATTCTCAATGCAAGGTCATTGTTTCTTCACAGTGGTCTACTGGAGGGCCTCTCAGAAAATTA
TATTCTCGATCCTCTGCACTCCGACCTTGTTGCCACCGACACCCATTAAGCACAGCAGCAGCAGCAACAGAAGAAGAAAAATATTATGAGGTCGAGGTTGAAGACACAGAGGACGAATCCGATTCGGATGGCGGGGAAGAGAAATACACTCAGCAAGTAAAGGGCAAGGGATTAAGGTGGACTGATGTAGGCGACAATGG
ATTAGACAAGACGCAAAAAAGCCTCATAGAAGCACTGCCTCCAAAGATGTCTGGAAGGAGCAAGGCCCTGATGAAGCATATAATTTGTCTATCAGAAGAGGATGACCCATCTGAACTAATCATGAAATGGGTCAGAATCATGAAGCCCAAAAGAGTAGATTGGCTTGCAGTCCTCAAACAGATGGAGGAACAGAACCTCA
ACCATCCTCTCTTCTTCAAGATAACAGAAATTGCTCTCAGGGAAGAATCATTTGAAGCCAACATTCGTGATTATACCAAACTTATAGATGCCTATGCAAGGAAAGGCAATTTGACAGATGCTGAAAGGGTACTAAGGACCATGGAGGAGAGGGGTTTCATATGTGATGAAATTACATTTACAGTACTAATCCAAATGTAC
AGTAAGACAGGGAATCTTGATCGTGCTAAACAAATATTTGACAAGATGAGGCTATCAGTTCTTAACCTGGATCAGAAAGCATATGGCTCAATGGTTATGGCTTATGTGAGAGCAGGATTGCCTGAAGCAGGAGTGTCTTTGATGAGAGAGATGGAATCCAAGAGTATTACTGCAGGCAAAGAAGTGTATAAGGCATTGCT
GAAGTCTTTTGCTCGCCAGGGTAATGCTAATAGTGCCCAAAGGATGTTCAATAGTATGCAGTTTGCTGGCATTGTGCCGAATCTCAACTCTTGTACTATACTGTTGGAGGCTTATGCCCATGCTGGTGACCCAGACCAGGCTAGAAGTGTTTTTGAAAATATAATAAAATCTGGCCAGAAGCCAGATGATAAATGTACAT
CTGTCATGGTCTATGCATATGAAAAAAAGAATTTACTTGGCAAGGCACTAAGCTTGCTATTGGACCTTGAAAAGGATGGCTTCAAACCAGGAGATGAAACTTTGGCCGTTTTAATTGACTGGCTTGGTAAGTTAGGGTTGGTTGAGGAGGCAGAACAACTTTTTGATGAGATAGCTAAAACAGAAGTTCCCTCAAAAATT
CTTGTAAGCCTCTGGGAAATGTATGCTAGGGCAGGCCTGCAAGAAAAAGCAGCACACACTTTGGGCCTTTTGCAAAAGAATTCTCAAGCCTTGAATGTGAATGGCTTTGAAAGGTTGATAAGTGGCCTTTTAGCTGGTGGTTTTGTAGACGAAGCAAAGAAGATGCATGACCAAATGCGAATTCAAGGGCTGACTCCACC
AGAACCTATTGCAGTCGCATTAACACCCTGCTCACCCTGCTCAAGGCATCTTACATAGCAACCTTGTGCCAATGGAACATACAAATCAAGGGACTCTTGGTCTTTTGGTACTTTAATGTCCAAAGCTAAATTCAATGTTCTTGTTGCAGGCTTGTCCTGACTGCACCAACAATCTTTCTTATTGAGATCTTATGTGTTTG
GCCACTGTTTGATATGGATGTGGAAGAAATGGGACGTCAAGACAAAATAGAACATTTATTCTATGTCTATGGTGATTAGTTATTAGTGTAGTCCTCGAATCCAGGCTGTTTACAGAATTCTGCAGTTGACAATGTATTCATATGTTTTGATAGAAATATGGCTACTTGCCTTGTATTTACTATTTAAAAGGACCTTTTGA
TTTGTTCTTTTATCTACCTTTTATCCCCAAAAGATGGATCACATTAATTAGTTCTCACATTGCTGCAGAACCTGGAGGGTAATGGCACATGTCCAGGAACAATAATTTTGAATTGAAAACTGGACAACCTGTGGAATAAAATTGCGATTGGACTGCTAAAATTTGTTTGTAAAATCATCATATGCTAAAAGACATGTGAC
AACATTACAGCTCTGCAGGAGTGATAGTGG