sp|Q8L6Z4|RPS9M_ARATH ----> Small ribosomal subunit protein uS9m
Intron 1 GTATTAAAAA ... TGCTTCAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.87 | 27 | 11 | 12 |
| A2 | 23.33 | 23 | 5 | 9 |
| A3 | 22.81 | 22 | 6 | 7 |
| A4 | 29.11 | 28 | 12 | 11 |
| A5 | 30.43 | 8 | 4 | 3 |
| A6 | 24.32 | 70 | 23 | 22 |
| A7 | 26.57 | 76 | 26 | 29 |
| A8 | 27.87 | 110 | 41 | 44 |
| A9 | 26.61 | 91 | 25 | 41 |
| A10 | 26.76 | 52 | 16 | 22 |
>TRINITY_DN113026_c0_g1_i5 from sample A1 / Example spliced isoformCGAAAATGGGTACAAGGGTTTTGAGGGCAGAAGGGTTTATGGAGGGTTTTACTCCCTCAGATCGCTATTGGCAACCATGTTTTACTCCCGTCTTTCTAGAGCCTACCGACTTCGACCACTAGTCCGGTCATATTCCAATTCATCGTACTCCCATTCTCGCATTTCTAGCAGTCCTCGGCCCTCCGATCTTTTGCAGGTCA
AGTTGGTGTTCTCCATTTGTTGTCCTGCGCTGCAACAGACCATCAGAACCTACGCAACCGGGAAGAAAAATGGCAATGGCAACGATGGAGATTCGTTCGGAGGCGATAAAACCAGAGACAACAGAAAAGGTCAACAAGGGGCATCTGTGAACGATACGTGGGATTTTTCCGGCGAGGGGGACACGTTCGGCCCTTCAAAT
GGGGACGAGTTCGGTACAGAGAAAGGTAACGAGAAGGTGGATTGGGGTTCTTTGCAACCAGACGAGAAATTGGATCAGGGAAAGGAGGAGGAGCAGTGGGGGGGGTTTGGAGAAATTGATAAAGACGGCAGCTGGGACCAGGATTTCGCCACTGGTTGGCCAACTGCAGAGCATCCCACTGAGACGGTTGGGGTCGGCGA
TAAAGGGTTCGAATCGAAGGAAGCGGTTGCAGATGACTGGGCTACGGCTGAAGGGTTCCAGCCCTGGGATGTGGAAGGAGGGGCCAGGGACCAGGAGGGTGTAGAAGTTAAACCCGATGGTGATTGGCAGGCAGCTGTTCAGGCTGCACAAGAGTTGGAAAGGGAGAAAGAGGAAAAACAACTCCAGGCTGATCTTGAAG
GTCAAAACCGTGCATTTGGAGACCTGATTGCAGCTTCAGGAATTACCGAGGTGCAGATTGAAAGTTTAATAGTTATGAAGGACTTGGAAGGGGTGGAAGGATTGCCACCGCTGAGAGAGATAGAAGATATTCGGCTTGCTAAACTGGAACGGAAGTCTCTTCGAGGTCAATTGGAGCAACAACGGCAAGAAGAAAAAGCT
AAAGCACGAGTAAGACAAGTAGATGAGAAAGGACGGGCATATGGAACAGGAAGAAGAAAGTGCAGTGTTGCTCGAGTGTGGATCCAGCCAGGGAATGGCAGGTTCATTGTCAATGAAAAACCCTTTGATGCATATTTTACACAGCTGGCACACCGTGCTGATCTTCTTGCACCATTTGATAAGACAAAGACTTTGGGCCT
TTGGGATATTGTTTCTACTGTAAAAGGAGGTGGTGTCTCAGGTCAGGTTGGAGCGGTACGACTTGGAATCAGTAGGGCATTGCAAAACTGGGAACCTGGATTGCGTACCTATTTGAGATCTGCTGGATTGTTGACCAGAGATCCACGTATGGTAGAGAGGAAAAAACCTGGGAAAGCAAAAGCAAGAAAGAGCTTTCAAT
GGGTCAAGAGATGAAGGATTGGAAATTATTTTCAGCCCTGGATCTATTCATTATATCATTTTTTTCTCTCCACTTTGTATTTCTCAATTTGGCCCTCCAATGGGCCTACCATTTTCCTTGTTTAAGAGGAATGACCCTACATTGTACTTGATTGAAAGTTTACAAGTCAGCTGCAGCCTGTGGTCCTAAGAAGCTTTTGC
CTGATGATACTGGGTAGTGCACTGGTGTGCAGCAGGCAGCACATGCCACGGTTTCAGTAATTTTGTTTAATGATCCCCTATCAACATTTCTTGTTAGCAAGGCTTGAGATAAGTTACTGTAGAATATGATCATATTACATGACATCTTCCATTGTCTCAATATGTAAAACACCTTTTCATTTATAGCACTCTATCCAATG
CGCCCTAATGCTTGTATCCAGTT
>TRINITY_DN113026_c0_g1_i4 from sample A1 / Example unspliced isoform:CGAAAATGGGTACAAGGGTTTTGAGGGCAGAAGGGTTTATGGAGGGTTTTACTCCCTCAGATCGCTATTGGCAACCATGTTTTACTCCCGTCTTTCTAGAGCCTACCGACTTCGACCACTAGTCCGGTCATATTCCAATTCATCGTACTCCCATTCTCGCATTTCTAGCAGTCCTCGGCCCTCCGATCTTTTGCAGGTCA
AGTTGGTGTTCTCCATTTGTTGTCCTGCGCTGCAACAGACCATCAGAACCTACGCAACCGGGAAGAAAAATGGCAATGGCAACGATGGAGATTCGTTCGGAGGCGATAAAACCAGAGACAACAGAAAAGGTCAACAAGGGGCATCTGTGAACGATACGTGGGATTTTTCCGGCGAGGGGGACACGTTCGGCCCTTCAAAT
GGGGACGAGTTCGGTACAGAGAAAGGTAACGAGAAGGTGGATTGGGGTTCTTTGCAACCAGACGAGAAATTGGATCAGGGAAAGGAGGAGGAGCAGTGGGGGGGGTTTGGAGAAATTGATAAAGACGGCAGCTGGGACCAGGATTTCGCCACTGGTTGGCCAACTGCAGAGCATCCCACTGAGACGGTTGGGGTCGGCGA
TAAAGGGTTCGAATCGAAGGAAGCGGTTGCAGATGACTGGGCTACGGCTGAAGGGTTCCAGCCCTGGGATGTGGAAGGAGGGGCCAGGGACCAGGAGGGTGTAGAAGTTAAACCCGATGGTGATTGGCAGGCAGCTGTTCAGGCTGCACAAGAGTTGGAAAGGGAGAAAGAGGAAAAACAACTCCAGGCTGATCTTGAAG
GTCAAAACCGTGCATTTGGAGACCTGATTGCAGCTTCAGGAATTACCGAGGTGCAGATTGAAAGTTTAATAGTTATGAAGGACTTGGAAGGGGTGGAAGGATTGCCACCGCTGAGAGAGATAGAAGATATTCGGCTTGCTAAACTGGAACGGAAGTCTCTTCGAGGTCAATTGGAGCAACAACGGCAAGAAGAAAAAGCT
AAAGCACGAGTAAGACAAGTAGATGAGAAAGGACGGGCATATGGAACAGGAAGAAGAAAGTGCAGTGTTGCTCGAGTGTGGATCCAGCCAGGGAATGGCAGGTTCATTGTCAATGAAAAACCCTTTGATGCATATTTTACACAGCTGGCACACCGTGCTGATCTTCTTGCACCATTTGATAAGACAAAGACTTTGGGCCT
TTGGGATATTGTTTCTACTGTAAAAGGAGGTGGTGTCTCAGgtattaaaaataattgttctctttgtattactcgaaagtaaaatagttatggccatacactctctgcagacataacaatctccttcccaatgttcttgcatgatcatctcctttccagcaatgattaaagcatctgtcaatggacttactgtgctggta
tactgcatgcattgagaggctttctggttctttacagttcttagtgcagtgattctagaccaggcgatgcttcagagGTCAGGTTGGAGCGGTACGACTTGGAATCAGTAGGGCATTGCAAAACTGGGAACCTGGATTGCGTACCTATTTGAGATCTGCTGGATTGTTGACCAGAGATCCACGTATGGTAGAGAGGAAAA
AACCTGGGAAAGCAAAAGCAAGAAAGAGCTTTCAATGGGTCAAGAGATGAAGGATTGGAAATTATTTTCAGCCCTGGATCTATTCATTATATCATTTTTTTCTCTCCACTTTGTATTTCTCAATTTGGCCCTCCAATGGGCCTACCATTTTCCTTGTTTAAGAGGTAATTGCAATAATGTGGAAAGTATTACTATGAACT
CATGTGTTAACCTGCGATGTGGTAAATGGTTATCTGCCCGATTTTGATTTCCAGTTTTCAAATTTTTATTAGATTGTTGATGAAGTTAAAAATGATGTGGCTGGCTACACTTGCCTTTAGACATCCCTGTGCTTCAAGTATCAACAAGCTCTGAAGCAAGCTTTTGCTATTGATAGCCATGCTTGTGCAACATTTCTAAT
TTTAAGATTTATTTAAGCGAAATACATTCTCAGGTTAAAAAAAA
Intron 2 GTATTAAAAA ... TCCTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.83 | 12 | 11 | 3 |
| A2 | 50 | 5 | 5 | 2 |
| A3 | 50 | 6 | 6 | 0 |
| A4 | 50 | 12 | 12 | 0 |
| A5 | 44.44 | 5 | 4 | 2 |
| A6 | 41.82 | 32 | 23 | 2 |
| A7 | 44.83 | 32 | 26 | 3 |
| A8 | 42.27 | 56 | 41 | 7 |
| A9 | 42.37 | 34 | 25 | 1 |
| A10 | 48.48 | 17 | 16 | 1 |
>TRINITY_DN113026_c0_g1_i7 from sample A1 / Example spliced isoformCGAAAATGGGTACAAGGGTTTTGAGGGCAGAAGGGTTTATGGAGGGTTTTACTCCCTCAGATCGCTATTGGCAACCATGTTTTACTCCCGTCTTTCTAGAGCCTACCGACTTCGACCACTAGTCCGGTCATATTCCAATTCATCGTACTCCCATTCTCGCATTTCTAGCAGTCCTCGGCCCTCCGATCTTTTGCAGGTCA
AGTTGGTGTTCTCCATTTGTTGTCCTGCGCTGCAACAGACCATCAGAACCTACGCAACCGGGAAGAAAAATGGCAATGGCAACGATGGAGATTCGTTCGGAGGCGATAAAACCAGAGACAACAGAAAAGGTCAACAAGGGGCATCTGTGAACGATACGTGGGATTTTTCCGGCGAGGGGGACACGTTCGGCCCTTCAAAT
GGGGACGAGTTCGGTACAGAGAAAGGTAACGAGAAGGTGGATTGGGGTTCTTTGCAACCAGACGAGAAATTGGATCAGGGAAAGGAGGAGGAGCAGTGGGGGGGGTTTGGAGAAATTGATAAAGACGGCAGCTGGGACCAGGATTTCGCCACTGGTTGGCCAACTGCAGAGCATCCCACTGAGACGGTTGGGGTCGGCGA
TAAAGGGTTCGAATCGAAGGAAGCGGTTGCAGATGACTGGGCTACGGCTGAAGGGTTCCAGCCCTGGGATGTGGAAGGAGGGGCCAGGGACCAGGAGGGTGTAGAAGTTAAACCCGATGGTGATTGGCAGGCAGCTGTTCAGGCTGCACAAGAGTTGGAAAGGGAGAAAGAGGAAAAACAACTCCAGGCTGATCTTGAAG
GTCAAAACCGTGCATTTGGAGACCTGATTGCAGCTTCAGGAATTACCGAGGTGCAGATTGAAAGTTTAATAGTTATGAAGGACTTGGAAGGGGTGGAAGGATTGCCACCGCTGAGAGAGATAGAAGATATTCGGCTTGCTAAACTGGAACGGAAGTCTCTTCGAGGTCAATTGGAGCAACAACGGCAAGAAGAAAAAGCT
AAAGCACGAGTAAGACAAGTAGATGAGAAAGGACGGGCATATGGAACAGGAAGAAGAAAGTGCAGTGTTGCTCGAGTGTGGATCCAGCCAGGGAATGGCAGGTTCATTGTCAATGAAAAACCCTTTGATGCATATTTTACACAGCTGGCACACCGTGCTGATCTTCTTGCACCATTTGATAAGACAAAGACTTTGGGCCT
TTGGGATATTGTTTCTACTGTAAAAGGAGGTGGTGTCTCAGCAATGATTAAAGCATCTGTCAATGGACTTACTGTGCTGGTATACTGCATGCATTGAGAGGCTTTCTGGTTCTTTACAGTTCTTAGTGCAGTGATTCTAGACCAGGCGATGCTTCAGAGGTCAGGTTGGAGCGGTACGACTTGGAATCAGTAGGGCATTG
CAAAACTGGGAACCTGGATTGCGTACCTATTTGAGATCTGCTGGATTGTTGACCAGAGATCCACGTATGGTAGAGAGGAAAAAACCTGGGAAAGCAAAAGCAAGAAAGAGCTTTCAATGGGTCAAGAGATGAAGGATTGGAAATTATTTTCAGCCCTGGATCTATTCATTATATCATTTTTTTCTCTCCACTTTGTATTT
CTCAATTTGGCCCTCCAATGGGCCTACCATTTTCCTTGTTTAAGAGGTAATTGCAATAATGTGGAAAGTATTACTATGAACTCATGTGTTAACCTGCGATGTGGTAAATGGTTATCTGCCCGATTTTGATTTCCAGTTTTCAAATTTTTATTAGATTGTTGATGAAGTTAAAAATGATGTGGCTGGCTACACTTGCCTTT
AGACATCCCTGTGCTTCAAGTATCAACAAGCTCTGAAGCAAGCTTTTGCTATTGATAGCCATGCTTGTGCAACATTTCTAATTTTAAGATTTATTTAAGCGAAATACATTCTCAGGTTAAAAAAAA
>TRINITY_DN113026_c0_g1_i4 from sample A1 / Example unspliced isoform:CGAAAATGGGTACAAGGGTTTTGAGGGCAGAAGGGTTTATGGAGGGTTTTACTCCCTCAGATCGCTATTGGCAACCATGTTTTACTCCCGTCTTTCTAGAGCCTACCGACTTCGACCACTAGTCCGGTCATATTCCAATTCATCGTACTCCCATTCTCGCATTTCTAGCAGTCCTCGGCCCTCCGATCTTTTGCAGGTCA
AGTTGGTGTTCTCCATTTGTTGTCCTGCGCTGCAACAGACCATCAGAACCTACGCAACCGGGAAGAAAAATGGCAATGGCAACGATGGAGATTCGTTCGGAGGCGATAAAACCAGAGACAACAGAAAAGGTCAACAAGGGGCATCTGTGAACGATACGTGGGATTTTTCCGGCGAGGGGGACACGTTCGGCCCTTCAAAT
GGGGACGAGTTCGGTACAGAGAAAGGTAACGAGAAGGTGGATTGGGGTTCTTTGCAACCAGACGAGAAATTGGATCAGGGAAAGGAGGAGGAGCAGTGGGGGGGGTTTGGAGAAATTGATAAAGACGGCAGCTGGGACCAGGATTTCGCCACTGGTTGGCCAACTGCAGAGCATCCCACTGAGACGGTTGGGGTCGGCGA
TAAAGGGTTCGAATCGAAGGAAGCGGTTGCAGATGACTGGGCTACGGCTGAAGGGTTCCAGCCCTGGGATGTGGAAGGAGGGGCCAGGGACCAGGAGGGTGTAGAAGTTAAACCCGATGGTGATTGGCAGGCAGCTGTTCAGGCTGCACAAGAGTTGGAAAGGGAGAAAGAGGAAAAACAACTCCAGGCTGATCTTGAAG
GTCAAAACCGTGCATTTGGAGACCTGATTGCAGCTTCAGGAATTACCGAGGTGCAGATTGAAAGTTTAATAGTTATGAAGGACTTGGAAGGGGTGGAAGGATTGCCACCGCTGAGAGAGATAGAAGATATTCGGCTTGCTAAACTGGAACGGAAGTCTCTTCGAGGTCAATTGGAGCAACAACGGCAAGAAGAAAAAGCT
AAAGCACGAGTAAGACAAGTAGATGAGAAAGGACGGGCATATGGAACAGGAAGAAGAAAGTGCAGTGTTGCTCGAGTGTGGATCCAGCCAGGGAATGGCAGGTTCATTGTCAATGAAAAACCCTTTGATGCATATTTTACACAGCTGGCACACCGTGCTGATCTTCTTGCACCATTTGATAAGACAAAGACTTTGGGCCT
TTGGGATATTGTTTCTACTGTAAAAGGAGGTGGTGTCTCAGgtattaaaaataattgttctctttgtattactcgaaagtaaaatagttatggccatacactctctgcagacataacaatctccttcccaatgttcttgcatgatcatctcctttccagCAATGATTAAAGCATCTGTCAATGGACTTACTGTGCTGGTA
TACTGCATGCATTGAGAGGCTTTCTGGTTCTTTACAGTTCTTAGTGCAGTGATTCTAGACCAGGCGATGCTTCAGAGGTCAGGTTGGAGCGGTACGACTTGGAATCAGTAGGGCATTGCAAAACTGGGAACCTGGATTGCGTACCTATTTGAGATCTGCTGGATTGTTGACCAGAGATCCACGTATGGTAGAGAGGAAAA
AACCTGGGAAAGCAAAAGCAAGAAAGAGCTTTCAATGGGTCAAGAGATGAAGGATTGGAAATTATTTTCAGCCCTGGATCTATTCATTATATCATTTTTTTCTCTCCACTTTGTATTTCTCAATTTGGCCCTCCAATGGGCCTACCATTTTCCTTGTTTAAGAGGTAATTGCAATAATGTGGAAAGTATTACTATGAACT
CATGTGTTAACCTGCGATGTGGTAAATGGTTATCTGCCCGATTTTGATTTCCAGTTTTCAAATTTTTATTAGATTGTTGATGAAGTTAAAAATGATGTGGCTGGCTACACTTGCCTTTAGACATCCCTGTGCTTCAAGTATCAACAAGCTCTGAAGCAAGCTTTTGCTATTGATAGCCATGCTTGTGCAACATTTCTAAT
TTTAAGATTTATTTAAGCGAAATACATTCTCAGGTTAAAAAAAA