NA ----> NA

Intron 1 GTAACACGGA ... TTTGTGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.41	7	36	18
A2	90.91	2	27	13
A3	69.49	9	32	9
A4	88	3	33	11
A5	100	0	4	3
A6	76.19	35	153	71
A7	73.49	46	184	71
A8	77.61	30	145	63
A9	69.75	49	160	66
A10	75.61	30	113	73

>TRINITY_DN47973_c1_g1_i3 from sample A7 / Example spliced isoform

CATTTCCATGTCACCAAACAATTGCCAACAGGTTATTGGAGCATAATCTTTTGCTAAACTGGAGTAAGATCGATGAAAGATCTTACCATTCTGTTGGTTGAAGTGATTTAATGCATGGAAGTGTAATTAAAAGATTCTCAAGTTTGTTAAAAACAAGAATTGAGTTTACAATTAATGCCAGAAGCTAAGATCGCTGAAGG
AAGTTGCTTAAGCTGCCGTGTGTAAAGAATAGATCTAGAAACTGCTATGGAAATCGTTGAGCACAACGGAGCAGGTTTGGTGCCACGTATTGATAATGGGAATCTTATCAACAATATTACAAAGAAGATAGAGATGCCAATCACATATCCAGAAAGCACGGATTGGAAAGAAATTTTTGCATTGTTAATATTATTCACCA
AAGAAGCACAATGAATGTGCTCGTCACCGCCAGTTTACTTATTCAAAGTGAAGTGAATGAGATTGCAGAAGATCAACAAATTTAGAAAACATATGGTGAATAGAGGATCGTCGAATTCATTTACCAGCTTTGCGCTCATTACGAATAGTATCATGTCTATAGAGTATCAATGAACTTAAACATAAATTGAAAGCGATTGG
ATAAGTCATCAAATAGAAGATCGATGATC

>TRINITY_DN47973_c1_g1_i4 from sample A7 / Example unspliced isoform:

CATTTCCATGTCACCAAACAATTGCCAACAGGTTATTGGAGCATAATCTTTTGCTAAACTGGAGTAAGATCGATGAAAGATCTTACCATTCTGTTGGTTGAAGTGATTTAATGCATGGAAGTGTAATTAAAAGATTCTCAAGTTTGTTAAAAACAAGAATTGAGTTTACAATTAATGCCAGAAGCTAAGATCGCTGAAGG
AAGTTGCTTAAGCTGCCGTGTGTAAAGAATAGATCTAGAAACTGCTATGGAAATCGTTGAGCACAACGGAGCAGGTTTGGTGCCACGTATTGATAATGGGAATCTTATCAACAATATTACAAAGAAGATAGAGATGCCAATCACATATCCAGAAAGCACGGATTGGAAAGAAATTTTTGCATTGTTAATATTATTCACCA
AAGAAGCACAATGAATGTGCTCGTCACCGCCAGTTTACTTATTCAAAGTGAAGTGAATGAGATTGCAGAAGATCAACAAATCTAGAAAACATATGGTGAATAGAGGATCGTCGAATTCATTTACCAGCTTTGCGCTCATTACGAATAGTATCATGTCTAGAGTATCAATGAAgtaacacggatgattctttttctctaat
gttattacatgattcatgaaattcttcctttcattatttgtagcgaaattcgtgtcgggacaggtgaaattttaaagctattttctggaggatgaagttaaatcttgacgaagaatctgacagaagatgcggcattcttttgtgacagCTTAAACATAAATTGAAAGCGATTGGATAAGTCATCAAATAGAAGATCGATG
ATC

Intron 2 GTGAATAGAG ... TTTGTGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	42.86	26	21	18
A2	36	24	14	13
A3	34.35	43	36	9
A4	31.91	32	19	11
A5	47.37	5	6	3
A6	51.13	97	132	71
A7	51.52	104	150	71
A8	43.58	112	110	63
A9	42.7	153	162	66
A10	51.48	82	101	73

>TRINITY_DN47973_c1_g1_i2 from sample A7 / Example spliced isoform

CATTTCCATGTCACCAAACAATTGCCAACAGGTTATTGGAGCATAATCTTTTGCTAAACTGGAGTAAGATCGATGAAAGATCTTACCATTCTGTTGGTTGAAGTGATTTAATGCATGGAAGTGTAATTAAAAGATTCTCAAGTTTGTTAAAAACAAGAATTGAGTTTACAATTAATGCCAGAAGCTAAGATCGCTGAAGG
AAGTTGCTTAAGCTGCCGTGTGTAAAGAATAGATCTAGAAACTGCTATGGAAATCGTTGAGCACAATAGAGCAGGTTTGGTGCCACGTATTGATAATGGGAATCTTATCAACAATATTGTAAATAAATTTGCCATGGTAAAAGGATGTCAATTGCTCAGTTTGCCAAGCATCACCAACATTACAAAGAAGATAGAGATGC
CAATCACATATCCAGAAAGCACGGATTGGAAAGAAATTTTTGCATTGTTAATATTATTCACCAAAGAAGCACAATGAATGTGCTCGTCACCGCCAGTTTACTTATTCAAAGTGAAGTGAATGAGATTGCAGAAGATCAACAAATCTAGAAAACATATGCTTAAACATAAATTGAAAGCGATTGGATAAGTCATCAAATAG
AAGATCGATGATCAAGGAAGTATCCAGAAAATGAAGGGATATTAACGAAGATTTATGTATCAGTTCTCTAATTTCATGGAGATGGTTCTGGTGTGCAGTTATATGCCAAAGATGGAGATCAGCTATCCTATTTAAGCTGGAAGAATTGGACTGCCAGGTGAG

>TRINITY_DN47973_c1_g1_i4 from sample A7 / Example unspliced isoform:

CATTTCCATGTCACCAAACAATTGCCAACAGGTTATTGGAGCATAATCTTTTGCTAAACTGGAGTAAGATCGATGAAAGATCTTACCATTCTGTTGGTTGAAGTGATTTAATGCATGGAAGTGTAATTAAAAGATTCTCAAGTTTGTTAAAAACAAGAATTGAGTTTACAATTAATGCCAGAAGCTAAGATCGCTGAAGG
AAGTTGCTTAAGCTGCCGTGTGTAAAGAATAGATCTAGAAACTGCTATGGAAATCGTTGAGCACAACGGAGCAGGTTTGGTGCCACGTATTGATAATGGGAATCTTATCAACAATATTACAAAGAAGATAGAGATGCCAATCACATATCCAGAAAGCACGGATTGGAAAGAAATTTTTGCATTGTTAATATTATTCACCA
AAGAAGCACAATGAATGTGCTCGTCACCGCCAGTTTACTTATTCAAAGTGAAGTGAATGAGATTGCAGAAGATCAACAAATCTAGAAAACATATGgtgaatagaggatcgtcgaattcatttaccagctttgcgctcattacgaatagtatcatgtctagagtatcaatgaagtaacacggatgattctttttctctaat
gttattacatgattcatgaaattcttcctttcattatttgtagcgaaattcgtgtcgggacaggtgaaattttaaagctattttctggaggatgaagttaaatcttgacgaagaatctgacagaagatgcggcattcttttgtgacagCTTAAACATAAATTGAAAGCGATTGGATAAGTCATCAAATAGAAGATCGATG
ATC