sp|Q8S4Q6|FHY1_ARATH ----> Protein FAR-RED ELONGATED HYPOCOTYL 1
Intron 1 GTAAGTATAC ... TTCCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 5 | 2.4 | 0 |
| A2 | 23.08 | 10 | 6.6 | 3 |
| A3 | 33.33 | 6 | 0 | 3 |
| A4 | 16.67 | 5 | 0.8 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 13.64 | 19 | 3.2 | 3 |
| A7 | 17.14 | 29 | 3.4 | 6 |
| A8 | 10 | 18 | 1.6 | 2 |
| A9 | 28.57 | 25 | 2.6 | 10 |
| A10 | 11.54 | 23 | 1.6 | 3 |
>TRINITY_DN68447_c0_g1_i2 from sample A2 / Example spliced isoformGGCGTATTTACAGGTGGCGAGCTGAGACTGGATAACGGAACCCCAAAATGTTCACCCCACGTGTCCCGATATGGGTTTCCTGGATTAATCCATTGATCCAGTCACTCAAAAGGACGTCATCATACATACACTAATGTACCAGGAATTAATGGATGGATTGCCTTTGATTACACAACATGCTGATGAGACTTGAGATGCAC
CTGCCTTCTTTCCGAAGTAACATCACAAGCTTGGTCTGAAATTTTCTTCTCTCCTCTGCCTTTTAAGGTCTTTCAAATTCCGTCTTGTCATACACAGAAAATTATGGGGCAAACAGGAGGAAGAGGAGGAGAAGATATCGGGAATTACAACAATGCGGTCGCTTTTTTCTCTGGGGATTTAAGTAAGAAGCGTAAGTTGG
AAGAGCAGCTGAACCTACCATCAGCAAAACATATGTTCAGATTGAATCCAGGTAATTCTGAGGGAGAAAGCCCTTTACTTACTGGTTGTACTGATGAAGTCAGAAATACACGCAGAAGTTTCTATTGTGTTAAGCAGTTTGGACAGGAAGGTGGTATGGTGGATCCAGCTATCGTGAATGGCAGCACTGTTTTGACATTG
AACAGAGCGAAATTAGATAGTCGTGTAGATGTTCAACCATATGAAACATATTCAGCTTGTTCAACTGGGAATTCTTGTATTTCTGAAAATTCCAAACATATATGTTGTAAAACATCCTGTAGTCCCAACCAATTTTCTGTTCTTCCAGGCAATCAATCTTCTTGTCCTCCAGGCAACCATTTTTGCAGTTCTGCAGGCTA
TTCCACTACATTTGGTGTCATACTTGATCATTCCCAGTGTTCACCACATTATTTAGATTGCAAAGAAACTGAGAAAAGAACATTGGATGATTCAGACTGTCTGGGTGGAAGTTTAGAGGAAGTCAATTTTGAAAAAGAGAATTTATATAGTCATCGATCTTGTCTGATAAATAATCAGTTTAATAGATTGTCCAGCAGAA
AGAGTGCAGCACAAGCAAATGAATATCGTGCAGTGAATTTACTTGGAAAAGATGGCACTGGAACTGATTCTGTAGGATCTGTAGTCTCAGCATACAAGCCTTCCATAGTGAAGAGGCACAAAGCTATAAAAGCATGGGAATTTGGTTCTGGAAGTATGAGTGATGAACATGGAGGCTGCCCAATGGAACAAGCACAATTG
AAAGCATTAGCGAACACACATTCCTCAATTGAAACTTGCACCAGACCAAATGCTACAGTTTGCAATCCAGAAAACACTATTGCTCAATATGGAAGCACTGAGGCTGTAATCACATACACA
>TRINITY_DN68447_c0_g1_i1 from sample A2 / Example unspliced isoform:GGCGTATTTACAGGTGGCGAGCTGAGACTGGATAACGGAACCCCAAAATGTTCACCCCACGTGTCCCGATATGGGTTTCCTGGATTAATCCATTGATCCAGTCACTCAAAAGGACGTCATCATACATACACTAATGTACCAGGAATTAATGGATGGATTGCCTTTGATTACACAACATGCTGATGAGACTTGAGATGCAC
CTGCCTTCTTTCCGAAGTAACATCACAAGCTTGGTCTGAAATTTTCTTCTCTCCTCTGCCTTTTAAGGTCTTTCAAATTCCGTCTTGTCATACACAGAAAATTATGGGGCAAACAGGAGGAAGAGGAGGAGAAGATATCGGGAATTACAACAATGCGGTCGCTTTTTTCTCTGGGGATTTAAGTAAGAAGCGTAAGTTGG
AAGAGCAGCTGAACCTACCATCAGCAAAACATATGTTCAGATTGAATCCAGGTAATTCTGAGGGAGAAAGCCCTTTACTTACTGGTTGTACTGATGAAGTCAGAAATACACGCAGAAGTTTCTATTGTGTTAAGCAGTTTGGACAGGAAGGTGGTATGGTGGATCCAGCTATCGTGAATGGCAGCACTGTTTTGACATTG
AACAGAGCGAAATTAGATAGTCGTGTAGATGTTCAACCATgtaagtatactggtggcagcgttgccaggaaaatggaagcttaaaatgttatccttaccagctttgtcagcaatgtgaaatctagcaaatatttattgcagtctgttttgttccctgcagATGAAACATATTCAGCTTGTTCAACTGGGAATTCTTGTAT
TTCTGAAAATTCCAAACATATATGTTGTAAAACATCCTGTAGTCCCAACCAATTTTCTGTTCTTCCAGGCAATCAATCTTCTTGTCCTCCAGGCAACCATTTTTGCAGTTCTGCAGGCTATTCCACTACATTTGGTGTCATACTTGATCATTCCCAGTGTTCACCACATTATTTAGATTGCAAAGAAACTGAGAAAAGAA
CATTGGATGATTCAGACTGTCTGGGTGGAAGTTTAGAGGAAGTCAATTTTGAAAAAGAGAATTTATATAGTCATCGATCTTGTCTGATAAATAATCAGTTTAATAGATTGTCCAGCAGAAAGAGTGCAGCACAAGCAAATGAATATCGTGCAGTGAATTTACTTGGAAAAGATGGCACTGGAACTGATTCTGTAGGATCT
GTAGTCTCAGCATACAAGCCTTCCATAGTGAAGAGGCACAAAGCTATAAAAGCATGGGAATTTGGTTCTGGAAGTATGAGTGATGAACATGGAGGCTGCCCAATGGAACAAGCACAATTGAAAGCATTAGCGAACACACATTCCTCAATTGAAACTTGCACCAGACCAAATGCTACAGTTTGCAATCCAGAAAACACTAT
TGCTCAATATGGAAGCACTGAGGCTGTAATCACATACACA
Intron 2 GTGAGACATT ... CAGAACAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 7 | 7 |
| A2 | 73.33 | 2 | 5 | 6 |
| A3 | 66.67 | 2 | 3 | 5 |
| A4 | 100 | 0 | 2 | 2 |
| A5 | 66.67 | 2 | 5 | 3 |
| A6 | 67.03 | 15 | 32 | 29 |
| A7 | 83.33 | 6 | 27 | 33 |
| A8 | 75.38 | 16 | 45 | 53 |
| A9 | 82.69 | 9 | 36 | 50 |
| A10 | 94.37 | 2 | 34 | 33 |
>TRINITY_DN37426_c0_g1_i2 from sample A6 / Example spliced isoformTTCAGTTTTATACTCTGATGGAAACAGCCACCACTTGAATTTCCAACAGGCACAACACAGTTCCCTTGGCATGTCACTTGTTTACAGTCAAAGCGACGTAACTGCCACTAGAGGTACAGGGCACGTTTTCCTAGGGGCGTATTTACAGGTGGCGAGCTGAGACTGGATAACGGAACCCCAAAATGTTCACCCCACGTGTC
CCGATATGGGTTTCCTGGATTAATCCATTGATCCAGTCACTCAAAAGGACGTCATCATACATACACTAATGTACCAGGAATTAATGGATGGATTGCCTTTGATTACACAACATGCTGATGAGACTTGAGATGCACCTGCCTTCTTTCCGAAGTAACATCACAAGCTTGGTCTGAAATTTTCTTCTCTCCTCTGCCTTTTA
AGGTCTTTCAAATTCCGTATTGTCATACACAGAAAATTATGGGGCAAACAGGAGGAAGAGGAGGAGAAGATATCGGGAATTACAACAATGCGGTCGCTTTTTTCTCTGGGGATTTAAGTAAGAAGCGTAAGTTGGAAGAGCAGCTGAACCTACCATCAGCAAAACATATGTTCAGATTGAATCCAGGTAATTCTGAGGGA
GAAAGCCCTTTACTTACTGGTTGTACTGATGAAGTCAGAAATACACGCAGAAGTTTCTATTGTGTTAAGCAGTTTGGACAGGAAGGTGGTATGGTGGATCCAGCTATCGTGAATGGCAGCACTGTTTTGACATTGAACAGAGCGAAATTAGATAGTCGTGTAGATGTTCAACCATATGAAACATATTCAGCTTGTTCAAC
TGGGAATTCTTGTATTTCTGAAAATTCCAAACATATATGTTGTAAAACATCCTGTAGTCCCAACCAATTTTCTGTTCTTCCAGGCAATCAATCTTCTTGTCCTCCAGGCAACCATTTTTGCAGTTCTGCAGGCTATTCCACTACATTTGGTGTCATACTTGATCATTCCCAGTGTTCACCACATTATTTAGATTGCAAAG
AAACTGAGAAAAGAACATTGGATGATTCAGACTGTCTGGGTGGAAGTTTAGAGGAAGTCAATTTTGAAAAAGAGAATTTATATAGTCATCGATCTTGTCTGATAAATAATCAGTTTAATAGATTGTCCAGCAGAAAGAGTGCAGCACAAGCAAATGAATATCGTGCAGTGAATTTACTTGGAAAAGATGGCACTGGAACT
GATTCTGTAGGATCTGTAGTCTCAGCATACAAGCCTTCCATAGTGAAGAGGCACAAAGCTATAAAAGCATGGGAATTTGGTTCTGGAAGTATGAGTGATGAACATGGAGGCTGCCCAATGGAACAAGCACAATTGAAAGCATTAGCGAACACACATTCCTCAATTGAAACTTGCACCAGACCAAATGCTACAGTTTGCAA
TCCAGAAAACACTATTGCTCAATATGGAAGCACTGAGGCTGTAATCACATACACAGACATTTATGAAGAACTAGATGCTGAAGCTTATTTAGAAAAATCGACTCTGGACAAAGAAATAATGCCCGACACAGATGAACGCACGGGTTCAAGACCCCCAACCATTGATAAAGACTTTGAACAGTATTTTTCCATGTTAATGC
TCTGACCATCCTTTTGAAGTTATTTGTACTACAGAACTAGATTGTTCCATGTGTACAGTTTTTTATGAATGTGTACATAGAGAAACATATTTTCTCTTCACATGTGTACATAGTTTCCTAGTCACTTGTGCCAGTATTTTTAATCACAAGAGAAACATAGAACTTTTTTAGGGACATCTTTAGCAACAACATTTCTGCAG
CACAGTAATGAATTCGCTTGTAGAAAGATATGGGATGACATGGTTTATGGGTAATGTTCTGGAAGTATTTTTATCTCAAAGTTGACATTCACCTGCACAAGGTATGGAGCGGGTTCCAATTATATATATCTCCTTTGGATTATGTTATATGCATTGTTTTTTGAATGTGCTTTTTTCACTGGCC
>TRINITY_DN37426_c0_g1_i4 from sample A6 / Example unspliced isoform:TTCAGTTTTATACTCTGATGGAAACAGCCACCACTTGAATTTCCAACAGGCACAACACAGTTCCCTTGGCATGTCACTTGTTTACAGTCAAAGCGACGTAACTGCCACTAGAGGTACAGGGCACGTTTTCCTAGGGGCGTATTTACAGGTGGCGAGCTGAGACTGGATAACGGAACCCCAAAATGTTCACCCCACGTGTC
CCGATATGGGTTTCCTGGATTAATCCATTGATCCAGTCACTCAAAAGGACGTCATCATACATACACTAATGTACCAGGAATTAATGGATGGATTGCCTTTGATTACACAACATGCTGATGAGACTTGAGATGCACCTGCCTTCTTTCCGAAGTAACATCACAAGCTTGGTCTGAAATTTTCTTCTCTCCTCTGCCTTTTA
AGGTCTTTCAAATTCCGTATTGTCATACACAGAAAATTATGGGGCAAACAGGAGGAAGAGGAGGAGAAGATATCGGGAATTACAACAATGCGGTCGCTTTTTTCTCTGGGGATTTAAGTAAGAAGCGTAAGTTGGAAGAGCAGCTGAACCTACCATCAGCAAAACATATGTTCAGATTGAATCCAGATGAAACATATTCA
GCTTGTTCAACTGGGAATTCTTGTATTTCTGAAAATTCCAAACATATATGTTGTAAAACATCCTGTAGTCCCAACCAATTTTCTGTTCTTCCAGGCAATCAATCTTCTTGTCCTCCAGGCAACCATTTTTGCAGTTCTGCAGGCTATTCCACTACATTTGGTGTCATACTTGATCATTCCCAGTGTTCACCACATTATTT
AGATTGCAAAGAAACTGAGAAAAGAACATTGGATGATTCAGACTGTCTGGGTGGAAGTTTAGAGGAAGTCAATTTTGAAAAAGAGAATTTATATAGTCATCGATCTTGTCTGATAAATAATCAGTTTAATAGATTGTCCAGCAGAAAGAGTGCAGCACAAGCAAATGAATATCGTGCAGTGAATTTACTTGGAAAAGATG
GCACTGGAACTGATTCTGTAGGATCTGTAGTCTCAGCATACAAGCCTTCCATAGTGAAGAGGCACAAAGCTATAAAAGCATGGGAATTTGGTTCTGGAAGTATGAGTGATGAACATGGAGGCTGCCCAATGGAACAAGCACAATTGAAAGCATTAGCGAACACACATTCCTCAATTGAAACTTGCACCAGACCAAATGCT
ACAGTTTGCAATCCAGAAAACACTATTGCTCAATATGGAAGCACTGAGGCTGTAATCACATACACAGACATTTATGAAGAACTAGATGCTGAAGCTTATTTAGAAAAATCGACTCTGGACAAAGAAATAATGCCCGACACAGgtgagacattgccattatttgttctctcatctgggcgcgtaacgcagaacaaagATGA
ACGCACGGGTTCAAGACCCCCAACCATTGATAAAGACTTTGAACAGTATTTTTCCATGTTAATGCTCTGACCATCCTTTTGAAGTTATTTGTACTACAGAACTAGATTGTTCCATGTGTACAGTTTTTTATGAATGTGTACATAGAGAAACATATTTTCTCTTCACATGTGTACATAGTTTCCTAGTCACTTGTGCCAGT
ATTTTTAATCACAAGAGAAACATAGAACTTTTTTAGGGACATCTTTAGCAACAACATTTCTGCAGCACAGTAATGAATTCGCTTGTAGAAAGATATGGGATGACATGGTTTATGGGTAATGTTCTGGAAGTATTTTTATCTCAAAGTTGACATTCACCTGCACAAGGTATGGAGCGGGTTCCAATTATATATATCTCCTT
TGGATTATGTTATATGCATTGTTTTTTGAATGTGCTTTTTTCACTGGCC
Intron 3 GTAATTCTGA ... TTCCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 16 | 0 |
| A2 | 70 | 3 | 7 | 3 |
| A3 | 37.5 | 5 | 3 | 3 |
| A4 | 60 | 2 | 3 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 61.54 | 5 | 8 | 3 |
| A7 | 72.73 | 6 | 16 | 6 |
| A8 | 64.29 | 5 | 9 | 2 |
| A9 | 70.59 | 10 | 24 | 10 |
| A10 | 64.29 | 5 | 9 | 3 |
>TRINITY_DN37426_c0_g1_i4 from sample A6 / Example spliced isoformTTCAGTTTTATACTCTGATGGAAACAGCCACCACTTGAATTTCCAACAGGCACAACACAGTTCCCTTGGCATGTCACTTGTTTACAGTCAAAGCGACGTAACTGCCACTAGAGGTACAGGGCACGTTTTCCTAGGGGCGTATTTACAGGTGGCGAGCTGAGACTGGATAACGGAACCCCAAAATGTTCACCCCACGTGTC
CCGATATGGGTTTCCTGGATTAATCCATTGATCCAGTCACTCAAAAGGACGTCATCATACATACACTAATGTACCAGGAATTAATGGATGGATTGCCTTTGATTACACAACATGCTGATGAGACTTGAGATGCACCTGCCTTCTTTCCGAAGTAACATCACAAGCTTGGTCTGAAATTTTCTTCTCTCCTCTGCCTTTTA
AGGTCTTTCAAATTCCGTATTGTCATACACAGAAAATTATGGGGCAAACAGGAGGAAGAGGAGGAGAAGATATCGGGAATTACAACAATGCGGTCGCTTTTTTCTCTGGGGATTTAAGTAAGAAGCGTAAGTTGGAAGAGCAGCTGAACCTACCATCAGCAAAACATATGTTCAGATTGAATCCAGATGAAACATATTCA
GCTTGTTCAACTGGGAATTCTTGTATTTCTGAAAATTCCAAACATATATGTTGTAAAACATCCTGTAGTCCCAACCAATTTTCTGTTCTTCCAGGCAATCAATCTTCTTGTCCTCCAGGCAACCATTTTTGCAGTTCTGCAGGCTATTCCACTACATTTGGTGTCATACTTGATCATTCCCAGTGTTCACCACATTATTT
AGATTGCAAAGAAACTGAGAAAAGAACATTGGATGATTCAGACTGTCTGGGTGGAAGTTTAGAGGAAGTCAATTTTGAAAAAGAGAATTTATATAGTCATCGATCTTGTCTGATAAATAATCAGTTTAATAGATTGTCCAGCAGAAAGAGTGCAGCACAAGCAAATGAATATCGTGCAGTGAATTTACTTGGAAAAGATG
GCACTGGAACTGATTCTGTAGGATCTGTAGTCTCAGCATACAAGCCTTCCATAGTGAAGAGGCACAAAGCTATAAAAGCATGGGAATTTGGTTCTGGAAGTATGAGTGATGAACATGGAGGCTGCCCAATGGAACAAGCACAATTGAAAGCATTAGCGAACACACATTCCTCAATTGAAACTTGCACCAGACCAAATGCT
ACAGTTTGCAATCCAGAAAACACTATTGCTCAATATGGAAGCACTGAGGCTGTAATCACATACACAGACATTTATGAAGAACTAGATGCTGAAGCTTATTTAGAAAAATCGACTCTGGACAAAGAAATAATGCCCGACACAGGTGAGACATTGCCATTATTTGTTCTCTCATCTGGGCGCGTAACGCAGAACAAAGATGA
ACGCACGGGTTCAAGACCCCCAACCATTGATAAAGACTTTGAACAGTATTTTTCCATGTTAATGCTCTGACCATCCTTTTGAAGTTATTTGTACTACAGAACTAGATTGTTCCATGTGTACAGTTTTTTATGAATGTGTACATAGAGAAACATATTTTCTCTTCACATGTGTACATAGTTTCCTAGTCACTTGTGCCAGT
ATTTTTAATCACAAGAGAAACATAGAACTTTTTTAGGGACATCTTTAGCAACAACATTTCTGCAGCACAGTAATGAATTCGCTTGTAGAAAGATATGGGATGACATGGTTTATGGGTAATGTTCTGGAAGTATTTTTATCTCAAAGTTGACATTCACCTGCACAAGGTATGGAGCGGGTTCCAATTATATATATCTCCTT
TGGATTATGTTATATGCATTGTTTTTTGAATGTGCTTTTTTCACTGGCC
>TRINITY_DN37426_c0_g1_i3 from sample A6 / Example unspliced isoform:TTCAGTTTTATACTCTGATGGAAACAGCCACCACTTGAATTTCCAACAGGCACAACACAGTTCCCTTGGCATGTCACTTGTTTACAGTCAAAGCGACGTAACTGCCACTAGAGGTACAGGGCACGTTTTCCTAGGGGCGTATTTACAGGTGGCGAGCTGAGACTGGATAACGGAACCCCAAAATGTTCACCCCACGTGTC
CCGATATGGGTTTCCTGGATTAATCCATTGATCCAGTCACTCAAAAGGACGTCATCATACATACACTAATGTACCAGGAATTAATGGATGGATTGCCTTTGATTACACAACATGCTGATGAGACTTGAGATGCACCTGCCTTCTTTCCGAAGTAACATCACAAGCTTGGTCTGAAATTTTCTTCTCTCCTCTGCCTTTTA
AGGTCTTTCAAATTCCGTATTGTCATACACAGAAAATTATGGGGCAAACAGGAGGAAGAGGAGGAGAAGATATCGGGAATTACAACAATGCGGTCGCTTTTTTCTCTGGGGATTTAAGTAAGAAGCGTAAGTTGGAAGAGCAGCTGAACCTACCATCAGCAAAACATATGTTCAGATTGAATCCAGgtaattctgaggga
gaaagccctttacttactggttgtactgatgaagtcagaaatacacgcagaagtttctattgtgttaagcagtttggacaggaaggtggtatggtggatccagctatcgtgaatggcagcactgttttgacattgaacagagcgaaattagatagtcgtgtagatgttcaaccatgtaagtatactggtggcagcgttgc
caggaaaatggaagcttaaaatgttatccttaccagctttgtcagcaatgtgaaatctagcaaatatttattgcagtctgttttgttccctgcagATGAAACATATTCAGCTTGTTCAACTGGGAATTCTTGTATTTCTGAAAATTCCAAACATATATGTTGTAAAACATCCTGTAGTCCCAACCAATTTTCTGTTCTTC
CAGGCAATCAATCTTCTTGTCCTCCAGGCAACCATTTTTGCAGTTCTGCAGGCTATTCCACTACATTTGGTGTCATACTTGATCATTCCCAGTGTTCACCACATTATTTAGATTGCAAAGAAACTGAGAAAAGAACATTGGATGATTCAGACTGTCTGGGTGGAAGTTTAGAGGAAGTCAATTTTGAAAAAGAGAATTTA
TATAGTCATCGATCTTGTCTGATAAATAATCAGTTTAATAGATTGTCCAGCAGAAAGAGTGCAGCACAAGCAAATGAATATCGTGCAGTGAATTTACTTGGAAAAGATGGCACTGGAACTGATTCTGTAGGATCTGTAGTCTCAGCATACAAGCCTTCCATAGTGAAGAGGCACAAAGCTATAAAAGCATGGGAATTTGG
TTCTGGAAGTATGAGTGATGAACATGGAGGCTGCCCAATGGAACAAGCACAATTGAAAGCATTAGCGAACACACATTCCTCAATTGAAACTTGCACCAGACCAAATGCTACAGTTTGCAATCCAGAAAACACTATTGCTCAATATGGAAGCACTGAGGCTGTAATCACATACACAGACATTTATGAAGAACTAGATGCTG
AAGCTTATTTAGAAAAATCGACTCTGGACAAAGAAATAATGCCCGACACAGGTGAGACATTGCCATTATTTGTTCTCTCATCTGGGCGCGTAACGCAGAACAAAGATGAACGCACGGGTTCAAGACCCCCAACCATTGATAAAGACTTTGAACAGTATTTTTCCATGTTAATGCTCTGACCATCCTTTTGAAGTTATTTG
TACTACAGAACTAGATTGTTCCATGTGTACAGTTTTTTATGAATGTGTACATAGAGAAACATATTTTCTCTTCACATGTGTACATAGTTTCCTAGTCACTTGTGCCAGTATTTTTAATCACAAGAGAAACATAGAACTTTTTTAGGGACATCTTTAGCAACAACATTTCTGCAGCACAGTAATGAATTCGCTTGTAGAAA
GATATGGGATGACATGGTTTATGGGTAATGTTCTGGAAGTATTTTTATCTCAAAGTTGACATTCACCTGCACAAGGTATGGAGCGGGTTCCAATTATATATATCTCCTTTGGATTATGTTATATGCATTGTTTTTTGAATGTGCTTTTTTCACTGGCC