sp|O49432|QRT3_ARATH ----> Polygalacturonase QRT3
Intron 1 GTAATTAATG ... TGGTACGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.25 | 11 | 0 | 5 |
| A2 | 7.69 | 12 | 3.5 | 1 |
| A3 | 31.82 | 30 | 4.5 | 14 |
| A4 | 33.33 | 2 | 0 | 1 |
| A5 | 15.38 | 11 | 1 | 2 |
| A6 | 11.46 | 85 | 11 | 11 |
| A7 | 20.83 | 133 | 14 | 35 |
| A8 | 23.91 | 70 | 11.5 | 22 |
| A9 | 16.98 | 88 | 11.5 | 18 |
| A10 | 17.99 | 155 | 20 | 34 |
>TRINITY_DN35519_c1_g1_i1 from sample A6 / Example spliced isoformTTTGTACTGGGCAAGGCAAATAACTTTCCTTTTAAATGCTCTGCCTGCCCTTCCTGTGTCTTCAAGAATTATAGCATCTTTGCATGAGTGTATCAGAAAATTTAGCAATTGCATTTACCTCAAATTTCAGGTTCAACACAAGAACGGTTATAAATATTGCCCAGCTTGTTTGAGGTTTGGTATCTCTTGTTGTTTGAGGT
TGGAATCAATTGGGTTTTGGGTTTTCTTTCTGTAATGGCCTTTTTATCCGTCACGGCATTCTTTATTGAAAAGTAATTTAAAGGAATCATAAGGTGAGCTTTTCTTTATATTTTGTCTATAGCTGCCTGGATCTTCGAGAACAAGCCTCAGCCTGCTAAGCCTGCTAAAGGAGTTATGGATGCCCTAAGAAATGTTTCCA
TCTTGGCTGTTATTGTGTTTCTTGGGATTTTGTCCAATGTAAATGGTCACAGGATTTTGAAATCATGCAAGACTGGTGCTCGCCTGAGATCCCTCTCGAAATCTAGTGTGGAAAGTCGGGATTCTTCGGTGGGCAATGGTCCCAAGTATTTCAGTCGGGCAGAGGCCGAGAGAGTTTCGGTTGCTCGCTGGAAGAACGTT
CAGTCGCTGGCTGCGGCGCCCAGACCTGACAACGCCACGGTCCCGTCGGATGGCCGGGTATTCTATGTTACAGACTATGGTGCGGATCCTACCGGAGCCACAGACAGCACTCAGGCCCTCTTGGCGACCATTAACGAGGCCTTCCATGTAGCTACAACCGAGCACACGATGCCTGGTCTACACGACCTCGGAGGCGTGGA
GATTCATCTTGAAGGAGGAGATTTTCGCATCAGCAATCCTCTCCGGCTGCCGGCAAACGGAGGCAGCAATGTTCTGATCCACGGGGGCACTCTGCGGGCTTCTGACAAGTTCCCAGCCGATCGTTACTTGATCGAGCTATGGTCCTCAACTGATGCGTTGCTCAATGGGAGCCTCAATGGAGACGAGCTCGCCGAAGCCA
CGAAGGACGCCGACTTCTATGCCGCGTCATACGAATACGTTACCTTGCAGAATTTGATGTTGGATGCAAATTTTCGAGGCGGGGGAATTCTTGTCATCAATTCCCTTCGAACCAACATCGATAACTGCTATATTTCGCATTTCATGTCCTTTGGCATCTTGGTTCAGGGGGGCCATGAGACATACATACGAAATTCCTTT
CTTGGGCAGCACATTACCGCGGGTGCAAGCCCCATTGAGAAGCAATTCAGTGGCGTTGCCATAAGTCTCATGGGCAACGACAACGCTGTAACGGATGTCGTCATTTTCTCGGCTGCTGTGGGGATTTCGGTGAGCGGGCAGGCCAATGTTTTAACGGGAGTCCACTGTTATAACAAGGCCACTGGTTTCGGAGGAGTTGG
AATCAGATTACAGCTTGGTGGATTGACTCAGACTAGGATTCTCGGTGCTTATATGGACTACACGGGCATTGTTGCAGAAGATCCCGTGCAGCTTGATATCGCCAATGGTTTCTTTCTGGGCGACGCCAACATAGTGCTGAAATCTTCTCAGAGGAAAATGATATCGGGCGTCAACATTGTAGACAATATGTTTAGTGGGT
CTACGAAGGGCGTGGACATTGTTCAGTTGGAAGGCCAGTTTGAATCGATTGAACAGACCGTTGTTGACAGGAACAATGTGCTTGGGATGTCGCTTAAATCAACCGTGGCTCGAGGCACTGTCAAGGGCAACGGAACCTCTTGGACCATAGATTTTAATCCCGTCCTCCTCTTCCCGAACCTTATTCAGCATGTTCAGTAT
TCCTTCTATACGTCTGATGCCTCATTTCCCAGGCATGCTCTCAGAAATGTCTCTCAGAACAAAGTGGTGATCGAGGCAGATACCCAAGTATCTGCAACAGTGGCAGTACAGGTAGACCAGAGTGCCACTTTTGTTCAAGGCAGTGGGATTTATTCCTAAGAGACGGGCTCTCTGGCTTATTACATACAGATTTTGCTAGA
TATAGTTAGTTGCAGGGTAACGGTGTACAGGAAAACCCCAAACCCCAAGCCGCTTGAAGCCTTTCTTTCTTTACTTTTTTGGCGATTCTGAATTTCTGAAATGGGATCTTGAATAGAATTCCGTTCCAGAGGGCTTGACGGGCCCAATCTTATTAGTAATAGTAATTATTTTACAAGGACTATAGATTATAGTTACTGAA
AATCTGGGCATGGTTATGATGGAAACTTGAGAAGACGGTTTTTCTGTTCATCTTTTTCTGGCATCATTTCAAGCCTAGGCCCTGGTTTTTCTCTTTATTGTAACAGAAATGATGAATAATGAAGGTTACTGAAAACCATGGCAACATAAACACAACACCCACTTTGGCAATCTTTATTTGATTTTTATATTGATGGAAAG
TGCTTTTAATTATTTACACAACTACTCAATTGAATTCAGCCATCTACTCTCTACTTACAACTATTCAACCGTGATTAGCATAATTTGAAATAGGAATGGACCGTGATTGGTCCCACAGGGTGTGGAAAAATGTTGAGGTCATTGACATCAGGCATCCAATCTGTTCCCTGTTTCATGACTGGGATCTTCAGGATTCAAGT
AGAATAAACTTTTTTTTGTTTTTTC
>TRINITY_DN35519_c1_g1_i3 from sample A6 / Example unspliced isoform:CCCAGACCTGACAACGCCACGgtaattaatgttgagatagcacaattttctataatttgagcaatggagatgggtttttcttgagttttttttggttggtttgtttttggtggtacgcagGTCCCGTCGGATGGCCGGGTATTCTATGTTACAGACTATGGTGCGGATCCTACCGGAGCCACAGACAGCACTCAGGCCCT
CTTGGCGACCATTAACGAGGCCTTCCATGTAGCTACAACCGAGCACACGATGCCTGGTCTACACGACCTCGGAGGCGTGGAGATTCATCTTGAAGGAGGAGATTTTCGCATCAGCAATCCTCTCCGGCTGCCGGCAAACGGAGGCAGCAATGTTCTGATCCACGGGGGCACTCTGCGGGCTTCTGACAAGTTCCCAGCCG
ATCGTTACTTGATCGAGCTATGGTCCTCAACTGATGCGTTGCTCAATGGGAGCCTCAATGGAGACGAGCTCGCCGAAGCCACGAAGGACGCCGACTTCTATGCCGCGTCATACGAATACGTTACCTTGCAGAATTTGATGTTGGATGCAAATTTTCGAGGCGGGGGAATTCTTGTCATCAATTCCCTTCGAACCAACATC
GATAACTGCTATATTTCGCATTTCATGTCCTTTGGCATCTTGGTTCAGGGGGGCCATGAGACATACATACGAAATTCCTTTCTTGGGCAGCACATTACCGCGGGTGCAAGCCCCATTGAGAAGCAATTCAGTGGCGTTGCCATAAGTCTCATGGGCAACGACAACGCTGTAACGGATGTCGTCATTTTCTCGGCTGCTGT
GGGGATTTCGGTGAGCGGGCAGGCCAATGTTTTAACGGGAGTCCACTGTTATAACAAGGCCACTGGTTTCGGAGGAGTTGGAATCAGATTACAGCTTGGTGGATTGACTCAGACTAGGATTCTCGGTGCTTATATGGACTACACGGGCATTGTTGCAGAAGATCCCGTGCAGCTTGATATCGCCAATGGTTTCTTTCTGG
GCGACGCCAACATAGTGCTGAAATCTTCTCAGAGGAAAATGATATCGGGCGTCAACATTGTAGACAATATGTTTAGTGGGTCTACGAAGGGCGTGGACATTGTTCAGTTGGAAGGCCAGTTTGAATCGATTGAACAGACCGTTGTTGACAGGAACAATGTGCTTGGGATGTCGCTTAAATCAACCGTGGCTCGAGGCACT
GTCAAGGGCAACGGAACCTCTTGGACCATAGATTTTAATCCCGTCCTCCTCTTCCCGAACCTTATTCAGCATGTTCAGTATTCCTTCTATACGTCTGATGCCTCATTTCCCAGGCATGCTCTCAGAAATGTCTCTCAGAACAAAGTGGTGATCGAGGCAGATACCCAAGTATCTGCAACAGTGGCAGTACAGGTAGACCA
GAGTGCCACTTTTGTTCAAGGCAGTGGGATTTATTCCTAAGAGACGGGCTCTCTGGCTTATTACATACAGATTTTGCTAGATATAGTTAGTTGCAGGGTAACGGTGTACAGGAAAACCCCAAACCCCAAGCCGCTTGAAGCCTTTCTTTCTTTACTTTTTTGGCGATTCTGAATTTCTGAAATGGGATCTTGAATAGAAT
TCCGTTCCAGAGGGCTTGACGGGCCCAATCTTATTAGTAATAGTAATTATTTTACAAGGACTATAGATTATAGTTACTGAAAATCTGGGCATGGTTATGATGGAAACTTGAGAAGACGGTTTTTCTGTTCATCTTTTTCTGGCATCATTTCAAGCCTAGGCCCTGGTTTTTCTCTTTATTGTAACAGAAATGATGAATAA
TGAAGGTTACTGAAAACCATGGCAACATAAACACAACACCCACTTTGGCAATCTTTATTTGATTTTTATATTGATGGAAAGTGCTTTTAATTATTTACACAACTACTCAATTGAATTCAGCCATCTACTCTCTACTTACAACTATTCAACCGTGATTAGCATAATTTGAAATAGGAATGGACCGTGATTGGTCCCACAGG
GTGTGGAAAAATGTTGAGGTCATTGACATCAGGCATCCAATCTGTTCCCTGTTTCATGACTGGGATCTTCAGGATTCAAGTAGAATAAACTTTTTTTTGTTTTTTC
Intron 2 GTTTGGTATC ... TTGTCTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.33 | 4 | 13 | 27 |
| A2 | 64.44 | 8 | 7 | 22 |
| A3 | 78.38 | 4 | 6 | 23 |
| A4 | 76.19 | 5 | 8 | 24 |
| A5 | 73.33 | 6 | 11 | 22 |
| A6 | 67.24 | 19 | 32 | 46 |
| A7 | 65.44 | 47 | 45 | 133 |
| A8 | 66.15 | 11 | 14 | 29 |
| A9 | 66.86 | 29 | 31 | 86 |
| A10 | 66.67 | 38 | 43 | 109 |
>TRINITY_DN38686_c0_g1_i4 from sample A9 / Example spliced isoformGTGGGGTTCATGCAATAATAATTTATTACTACTTTTGTACTGGGCAAGGCAAATAACTTTCCTTTTAAATGCTCTGCCTGCCCTTCCTGTGTCTTCAAGAATTATAGCATCTTTGCATGAGTGTATCAGAAAATTTAGCAATTGCATTTACCTCAAATTTCAGGTTCAACACAAGAACGGTTATAAATATTGCCCAGCTT
GTTTGAGCTGCCTGGATCTTCGAGAACAAGCCTCAGCCTGCTAAGCCTGCTAAAGGAGTTATGGATGCCCTAAGAAATGTTTCCATCTTGGCTGTTATTGTGTTTCTTGGGATTTTGTCCAATGTAAATGGTCACAGGATTTTGAAATCATGCAAGACTGGTGCTCGCCTGAGATCCCTCTCGAAATCTAGTGTGGAAAG
TCGGGATTCTTCGGTGGGCAATGGTCCCAAGTATTTCAGTCGGGCAGAGGCCGAGAGAGTTTCGGTTGCTCGCTGGAAGAACGTTCAGTCGCTGGCTGCGGCGCCCAGACCTGACAACGCCACGGTCCCGTCGGATGGCCGGGTATTCTATGTTACAGACTATGGTGCGGATCCTACCGGAGCCACAGACAGCACTCAGG
CCCTCTTGGCGACCATTAACGAGGCCTTCCATGTAGCTACAACCGAGCACACGATGCCTGGTCTACACGACCTCGGAGGCGTGGAGATTCATCTTGAAGGAGGAGATTTTCGCATCAGCAATCCTCTCCGGCTGCCGGCAAACGGAGGCAGCAATGTTCTGATCCACGGGGGCACTCTGCGGGCTTCTGACAAGTTCCCA
GCCGATCGTTACTTGATCGAGCTATGGTCCTCAACTGATGCGTTGCTCAATGGGAGCCTCAATGGAGACGAGCTCGCCGAAGCCACGAAGGACGCCGACTTCTATGCCGCGTCATACGAATACGTTACCTTGCAGAATTTGATGTTGGATGCAAATTTTCGAGGCGGGGGAATTCTTGTCATCAATTCCCTTCGAACCAA
CATCGATAACTGCTATATTTCGCATTTCATGTCCTTTGGCATCTTGGTTCAGGGGGGCCATGAGACATACATACGAAATTCCTTTCTTGGGCAGCACATTACCGCGGGTGCAAGCCCCATTGAGAAGCAATTCAGTGGCGTTGCCATAAGTCTCATGGGCAACGACAACGCTGTAACGGATGTCGTCATTTTCTCGGCTG
CTGTGGGGATTTCGGTGAGCGGGCAGGCCAATGTTTTAACGGGAGTCCACTGTTATAACAAGGCCACTGGTTTCGGAGGAGTTGGAATCAGATTACAGCTTGGTGGATTGACTCAGACTAGGATTCTCGGTGCTTATATGGACTACACGGGCATTGTTGCAGAAGATCCCGTGCAGCTTGATATCGCCAATGGTTTCTTT
CTGGGCGACGCCAACATAGTGCTGAAATCTTCTCAGAGGAAAATGATATCGGGCGTCAACATTGTAGACAATATGTTTAGTGGGTCTACGAAGGGCGTGGACATTGTTCAGTTGGAAGGCCAGTTTGAATCGATTGAACAGACCGTTGTTGACAGGAACAATGTGCTTGGGATGTCGCTTAAATCAACCGTGGCTCGAGG
CACTGTCAAGGGCAACGGAACCTCTTGGACCATAGATTTTAATCCCGTCCTCCTCTTCCCGAACCTTATTCAGCATGTTCAGTATTCCTTCTATACGTCTGATGCCTCATTTCCCAGGCATGCTCTCAGAAATGTCTCTCAGAACAAAGTGGTGATCGAGGCAGATACCCAAGTATCTGCAACAGTGGCAGTACAGGTAG
ACCAGAGTGCCACTTTTGTTCAAGGCAGTGGGATTTATTCCTAAGAGACGGGCTCTCTGGCTTATTACATACAGATTTTGCTAGATATAGTTAGTTGCAGGGTAACGGTGTACAGGAAAACCCCAAACCCCAAGCCGCTTGAAGCCTTTCTTTCTTTACTTTTTTGGCGATTCTGAATTTCTGAAATGGGATCTTGAATA
GAATTCCGTTCCAGAGGGCTTGACGGGCCCAATCTTATTAGTAATAGTAATTATTTTACAAGGACTATAGATTATAGTTACTGAAAATCTGGGCATGGTTATGATGGAAACTTGAGAAGACGGTTTTTCTGTTCATCTTTTTCTGGCATCATTTCAAGCCTAGGCCCTGGTTTTTCTCTTTATTGTAACAGAAATGATGA
ATAATGAAGGTTACTGAAAACCATGGCAACATAAACACAACACCCACTTTGGCAATCTTTATTTGATTTTTATATTGATGGAAAGTGCTTTTAATTATTTACACAACTACTCAATTGAATTCAGCCATCTACTCTCTACTTACAACTATTCAACCGTGATTAGCATAATTTGAAATAGGAATGGACCGTGATTGGTCCCA
CAGGGTGTGGAAAAATGTTGAGGTCATTGACATCAGGCATCCAATCTGTTCCCTGTTTCATGACTGGGATCTTCAGGATTCAAGTAGAATAAACTTTTTTTTGTTTTTTCTGATCACAATCTGGGATAACTGATTTGCTTGTCTGTTTATCTAATTCCTTTTACCTAATTCATAAATTTTCAATGTAGTTGTTCATCCAC
TGAATACAAGAATAAGTGGGTATTAAATAATCTTTTATTTTGGGGTTTATAAGAATCTACATTTTGA
>TRINITY_DN38686_c0_g1_i5 from sample A9 / Example unspliced isoform:GTGGGGTTCATGCAATAATAATTTATTACTACTTTTGTACTGGGCAAGGCAAATAACTTTCCTTTTAAATGCTCTGCCTGCCCTTCCTGTGTCTTCAAGAATTATAGCATCTTTGCATGAGTGTATCAGAAAATTTAGCAATTGCATTTACCTCAAATTTCAGGTTCAACACAAGAACGGTTATAAATATTGCCCAGCTT
GTTTGAGgtttggtatctcttgttgtttgaggttggaatcaattgggttttgggttttctttctgtaatggcctttttatccgtcacggcattctttattgaaaagtaatttaaaggaatcataaggtgagcttttctttatattttgtctatagCTGCCTGGATCTTCGAGAACAAGCCTCAGCCTGCTAAGCCTGCTA
AAGGAGTTATGGATGCCCTAAGAAATGTTTCCATCTTGGCTGTTATTGTGTTTCTTGGGATTTTGTCCAATGTAAATGGTCACAGGATTTTGAAATCATGCAAGACTGGTGCTCGCCTGAGATCCCTCTCGAAATCTAGTGTGGAAAGTCGGGATTCTTCGGTGGGCAATGGTCCCAAGTATTTCAGTCGGGCAGAGGCC
GAGAGAGTTTCGGTTGCTCGCTGGAAGAACGTTCAGTCGCTGGCTGCGGCGCCCAGACCTGACAACGCCACGGTCCCGTCGGATGGCCGGGTATTCTATGTTACAGACTATGGTGCGGATCCTACCGGAGCCACAGACAGCACTCAGGCCCTCTTGGCGACCATTAACGAGGCCTTCCATGTAGCTACAACCGAGCACAC
GATGCCTGGTCTACACGACCTCGGAGGCGTGGAGATTCATCTTGAAGGAGGAGATTTTCGCATCAGCAATCCTCTCCGGCTGCCGGCAAACGGAGGCAGCAATGTTCTGATCCACGGGGGCACTCTGCGGGCTTCTGACAAGTTCCCAGCCGATCGTTACTTGATCGAGCTATGGTCCTCAACTGATGCGTTGCTCAATG
GGAGCCTCAATGGAGACGAGCTCGCCGAAGCCACGAAGGACGCCGACTTCTATGCCGCGTCATACGAATACGTTACCTTGCAGAATTTGATGTTGGATGCAAATTTTCGAGGCGGGGGAATTCTTGTCATCAATTCCCTTCGAACCAACATCGATAACTGCTATATTTCGCATTTCATGTCCTTTGGCATCTTGGTTCAG
GGGGGCCATGAGACATACATACGAAATTCCTTTCTTGGGCAGCACATTACCGCGGGTGCAAGCCCCATTGAGAAGCAATTCAGTGGCGTTGCCATAAGTCTCATGGGCAACGACAACGCTGTAACGGATGTCGTCATTTTCTCGGCTGCTGTGGGGATTTCGGTGAGCGGGCAGGCCAATGTTTTAACGGGAGTCCACTG
TTATAACAAGGCCACTGGTTTCGGAGGAGTTGGAATCAGATTACAGCTTGGTGGATTGACTCAGACTAGGATTCTCGGTGCTTATATGGACTACACGGGCATTGTTGCAGAAGATCCCGTGCAGCTTGATATCGCCAATGGTTTCTTTCTGGGCGACGCCAACATAGTGCTGAAATCTTCTCAGAGGAAAATGATATCGG
GCGTCAACATTGTAGACAATATGTTTAGTGGGTCTACGAAGGGCGTGGACATTGTTCAGTTGGAAGGCCAGTTTGAATCGATTGAACAGACCGTTGTTGACAGGAACAATGTGCTTGGGATGTCGCTTAAATCAACCGTGGCTCGAGGCACTGTCAAGGGCAACGGAACCTCTTGGACCATAGATTTTAATCCCGTCCTC
CTCTTCCCGAACCTTATTCAGCATGTTCAGTATTCCTTCTATACGTCTGATGCCTCATTTCCCAGGCATGCTCTCAGAAATGTCTCTCAGAACAAAGTGGTGATCGAGGCAGATACCCAAGTATCTGCAACAGTGGCAGTACAGGTAGACCAGAGTGCCACTTTTGTTCAAGGCAGTGGGATTTATTCCTAAGAGACGGG
CTCTCTGGCTTATTACATACAGATTTTGCTAGATATAGTTAGTTGCAGGGTAACGGTGTACAGGAAAACCCCAAACCCCAAGCCGCTTGAAGCCTTTCTTTCTTTACTTTTTTGGCGATTCTGAATTTCTGAAATGGGATCTTGAATAGAATTCCGTTCCAGAGGGCTTGACGGGCCCAATCTTATTAGTAATAGTAATT
ATTTTACAAGGACTATAGATTATAGTTACTGAAAATCTGGGCATGGTTATGATGGAAACTTGAGAAGACGGTTTTTCTGTTCATCTTTTTCTGGCATCATTTCAAGCCTAGGCCCTGGTTTTTCTCTTTATTGTAACAGAAATGATGAATAATGAAGGTTACTGAAAACCATGGCAACATAAACACAACACCCACTTTGG
CAATCTTTATTTGATTTTTATATTGATGGAAAGTGCTTTTAATTATTTACACAACTACTCAATTGAATTCAGCCATCTACTCTCTACTTACAACTATTCAACCGTGATTAGCATAATTTGAAATAGGAATGGACCGTGATTGGTCCCACAGGGTGTGGAAAAATGTTGAGGTCATTGACATCAGGCATCCAATCTGTTCC
CTGTTTCATGACTGGGATCTTCAGGATTCAAGTAGAATAAACTTTTTTTTGTTTTTTCTGATCACAATCTGGGATAACTGATTTGCTTGTCTGTTTATCTAATTCCTTTTACCTAATTCATAAATTTTCAATGTAGTTGTTCATCCACTGAATACAAGAATAAGTGGGTATTAAATAATCTTTTATTTTGGGGTTTATAA
GAATCTACATTTTGA