sp|O82328|GASA7_ARATH ----> Gibberellin-regulated protein 7

Intron 1 GTATAAAGCC ... GGACGAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	0
A2	0	1	0	0
A3	50	2	1	2
A4	33.33	2	0	1
A5	-1	0	0	0
A6	28.57	10	1	4
A7	18.47	128	13	29
A8	17.71	144	6	31
A9	28.57	20	1	8
A10	27.27	8	3	3

>TRINITY_DN36156_c0_g1_i2 from sample A7 / Example spliced isoform

TTTTGAATGCCCCTCCTGAAACGTCCTTCCCCACACAGCTGTGACTTACTTGACACAGAGGGTAATAGTTAATGAAAACCCATTGGACCCCATAATACTCTGTATACATTGAAATTGACAGAGTACTATTCTGTTCTGTTCTGTATGGCCGTGTATTGAGAAATGTGTTAGTTGAATCACCACATGGACACAACTAATGC
TCTGCAGCTATTGCTACGCGGTTTTGTCCAGAGATATTGGGTTGCAACTTGCAACTCGTCAAATAGTATCTACAGGTACACTTTGACAACTGTATGCACCGAAATATTGGTGGCATGAAGCTTCCTGGAGGCCCGACAATGCAAATGGGCAAGTAAGTCCATTCATAGAGAGGCGAGCCATTATTAATCAAATGAAATTA
TGACCAAATTTGTAACCTATCTCCAGAAAAAATGGGTTTCTATGCTTATGATCTGTATTATGGAGGTACTCTGCATTCAATAATGTGGACCAGAACATATATGCACGTGAGAATCGCCAGCTGGGACGTTAAACATTTCTCAACTACCTGTGTAAGTCACCCTGCTTCTCTCCTTTATAAACCCACACCGCCCCGATTTC
TTGAGTATCAAGGGTTCAGCGATCTCCCTAATCAAGAAAAAGATGAAGAAGGCTAATGTTTGTGCGTATCTGTGCCTTGTGCTGGTTTTGATTGCAGCCATAGAATGGCAGGTTGTTCTTGGCACAGATGTGTGGGGTTTTGGAAATATTGAAAATGAAGATATGTCGGTTCTCAAAGGCTCACCTGCAGCTGCACCTGC
TCCACCAATGATAGATTGCAAGAGTGAGTGCGATCGGAGATGTAAGGTGGCCCCTCGACCAAAGGCATGTCACAAATTCTGCGGTATCTGTTGCAATGCTTGCAAGTGTGTTCCATCGGGCACAAAGGGTAACCTAGATGAATGCCCCTGTTATCGGGACAAGAGGAGCTCCCAGGGCCATCCCAAGTGCCCTTAAACAA
GGAGAGGAGCATTTTGTTGGCTTGATCGCCATTGCTATCAATATAGTCTGAGACTTAAATAAACAGCCTTATAGGCTGATCCGAGCTTTGTAGTTTAAACGTATTAAAGGCTGAACGCTCGAAGCCCCAAATTAATGCATATTTTTGTCGTTGTGTAAAAACACTTGACTCTTATGGAATGA

>TRINITY_DN36156_c0_g1_i1 from sample A7 / Example unspliced isoform:

TTTTGAATGCCCCTCCTGAAACGTCCTTCCCCACACAGCTGTGACTTACTTGACACAGAGGGTAATAGTTAATGAAAACCCATTGGACCCCATAATACTCTGTATACATTGAAATTGACAGAGTACTATTCTGTTCTGTTCTGTATGGCCGTGTATTGAGAAATGTGTTAGTTGAATCACCACATGGACACAACTAATGC
TCTGCAGCTATTGCTACGCGGTTTTGTCCAGAGATATTGGGTTGCAACTTGCAACTCGTCAAATAGTATCTACAGGTACACTTTGACAACTGTATGCACCGAAATATTGGTGGCATGAAGCTTCCTGGAGGCCCGACAATGCAAATGGGCAAGTAAGTCCATTCATAGAGAGGCGAGCCATTATTAATCAAATGAAATTA
TGACCAAATTTGTAACCTATCTCCAGAAAAAATGGGTTTCTATGCTTATGATCTGTATTATGGAGGTACTCTGCATTCAATAATGTGGACCAGAACATATATGCACGTGAGAATCGCCAGCTGGGACGTTAAACATTTCTCAACTACCTGTGTAAGTCACCCTGCTTCTCTCCTTTATAAACCCACACCGCCCCGATTTC
TTGAGTATCAAGGGTTCAGCGATCTCCCTAATCAAGAAAAAGATGAAGAAGGCTAATGTTTGTGCGTATCTGTGCCTTGTGCTGGTTTTGATTGCAGCCATAGAATGGCAGGTCAGTATTATGATATTTTTCAGGTCACTGGAAAATGTGGGGAGCATGATTCCCTTGTATATTGTTCTGAACGTTTGTATTCATTTGTT
TTACAGGTTGTTCTTGGCACAGATGTGTGGGGTTTTGGAAATATTGAAAATGAAGATATGTCGGTTCTCAAAGGCTCACCTGCAGCTGCACCTGCTCCACCAATGATAGgtataaagccatatcaggcatacataagctttttctgcttacaaacttgttttctctggtaatggctttgatattgtatatgacattttgt
gtgtctattttggggacgagcagATTGCAAGAGTGAGTGCGATCGGAGATGTAAGGTGGCCCCTCGACCAAAGGCATGTCACAAATTCTGCGGTATCTGTTGCAATGCTTGCAAGTGTGTTCCATCGGGCACAAAGGGTAACCTAGATGAATGCCCCTGTTATCGGGACAAGAGGAGCTCCCAGGGCCATCCCAAGTGCC
CTTAAACAAGGAGAGGAGCATTTTGTTGGCTTGATCGCCATTGCTATCAATATAGTCTGAGACTTAAATAAACAGCCTTATAGGCTGATCCGAGCTTTGTAGTTTAAACGTATTAAAGGCTGAACGCTCGAAGCCCCAAATTAATGCATATTTTTGTCGTTGTGTAAAAACACTTGACTCTTATGGAATGA

Intron 2 GTATAAACCC ... GGACGAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	0
A2	33.33	1	1	0
A3	42.86	2	1	2
A4	20	2	0	1
A5	-1	0	0	0
A6	20	10	1	4
A7	18.73	128	30	29
A8	17.95	144	32	31
A9	20	20	2	8
A10	27.27	8	3	3

>TRINITY_DN33936_c0_g1_i2 from sample A9 / Example spliced isoform

CGCCAGCTGGGACGTTAAACATTTCTCAACTACCTGTGTAAGTCACCCTGCTTCTCTCCTTTATAAACCCACACCGCCCCGATTTCTTGAGTATCAAGGGTTCAGCGATCTCCCTAATCAAGAAAAAGATGAAGAAGGCTAATGTTTGTGCGTATCTGTGCCTTGTGCTGGTTTTGATTGCAGCCATAGAATGGCAGGTT
GTTCTTGGCACAGATGTGTGGGGTTTTGGAAATATTGAAAATGAAGATATGTCGGTTCTCAAAGGCTCACCTGCAGCTGCACCTGCTCCACCAATGATAGATTGCAAGAGTGAGTGCGATCGGAGATGTAAGGTGGCCCCTCGACCAAAGGCATGTCACAAATTCTGCGGTATCTGTTGCAATGCTTGCAAGTGTGTTCC
ATCGGGCACAAAGGGTAACCTAGATGAATGCCCCTGTTATCGGGACAAGAGGAGCTCCCAGGGCCATCCCAAGTGCCCTTAAACAAGGAGAGGAGCATTTTGTTGGCTTGATCGCCATTGCTATCAATATAGTCTGAGACTTAAATAAACAGCCTTATAGGCTGATCCGAGCTTTGTAGTTTAAACGTATTAAAGGCTGA
ACGCTCGAAACCCCAAATTAATGCATATTTTTGTCGTTGTGTAAAACACTTGACTCTTAT

>TRINITY_DN33936_c0_g1_i1 from sample A9 / Example unspliced isoform:

CGCCAGCTGGGACGTTAAACATTTCTCAACTACCTGTGTAAGTCACCCTGCTTCTCTCCTTTATAAACCCACACCGCCCCGATTTCTTGAGTATCAAGGGTTCAGCGATCTCCCTAATCAAGAAAAAGATGAAGAAGGCTAATGTTTGTGCGTATCTGTGCCTTGTGCTGGTTTTGATTGCAGCCATAGAATGGCAGGTT
GTTCTTGGCACAGATGTGTGGGGTTTTGGAAATATTGAAAATGAAGATATGTCGGTTCTCAAAGGCTCACCTGCAGCTGCACCTGCTCCACCAATGATAGgtataaacccatatcaggcatacataagctttttctgcttacaaacttgttttctctggtaatggctttgatcttgtatatgacatttgtgtgtgtctat
tttggggacgagcagATTGCAAGAGTGAGTGCGATCGGAGATGTAAGGTGGCCCCTCGACCAAAGGCATGTCACAAATTCTGCGGTATCTGTTGCAATGCTTGCAAGTGTGTTCCATCGGGCACAAAGGGTAACCTAGATGAATGCCCCTGTTATCGGGACAAGAGGAGCTCCCAGGGCCATCCCAAGTGCCCTTAAACA
AGGAGAGGAGCATTTTGTTGGCTTGATCGCCATTGCTATCAATATAGTCTGAGACTTAAATAAACAGCCTTATAGGCTGATCCGAGCTTTGTAGTTTAAACGTATTAAAGGCTGAACGCTCGAAACCCCAAATTAATGCATATTTTTGTCGTTGTGTAAAACACTTGACTCTTAT

Intron 3 GTCAGTATTA ... TGTTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	0
A2	0	1	0	0
A3	-1	0	0	0
A4	45.45	3	3	2
A5	-1	0	0	0
A6	14.29	3	0	1
A7	7.14	117	7	11
A8	10	117	17	9
A9	6.67	14	2	0
A10	20	4	2	0

>TRINITY_DN36156_c0_g1_i2 from sample A7 / Example spliced isoform

TTTTGAATGCCCCTCCTGAAACGTCCTTCCCCACACAGCTGTGACTTACTTGACACAGAGGGTAATAGTTAATGAAAACCCATTGGACCCCATAATACTCTGTATACATTGAAATTGACAGAGTACTATTCTGTTCTGTTCTGTATGGCCGTGTATTGAGAAATGTGTTAGTTGAATCACCACATGGACACAACTAATGC
TCTGCAGCTATTGCTACGCGGTTTTGTCCAGAGATATTGGGTTGCAACTTGCAACTCGTCAAATAGTATCTACAGGTACACTTTGACAACTGTATGCACCGAAATATTGGTGGCATGAAGCTTCCTGGAGGCCCGACAATGCAAATGGGCAAGTAAGTCCATTCATAGAGAGGCGAGCCATTATTAATCAAATGAAATTA
TGACCAAATTTGTAACCTATCTCCAGAAAAAATGGGTTTCTATGCTTATGATCTGTATTATGGAGGTACTCTGCATTCAATAATGTGGACCAGAACATATATGCACGTGAGAATCGCCAGCTGGGACGTTAAACATTTCTCAACTACCTGTGTAAGTCACCCTGCTTCTCTCCTTTATAAACCCACACCGCCCCGATTTC
TTGAGTATCAAGGGTTCAGCGATCTCCCTAATCAAGAAAAAGATGAAGAAGGCTAATGTTTGTGCGTATCTGTGCCTTGTGCTGGTTTTGATTGCAGCCATAGAATGGCAGGTTGTTCTTGGCACAGATGTGTGGGGTTTTGGAAATATTGAAAATGAAGATATGTCGGTTCTCAAAGGCTCACCTGCAGCTGCACCTGC
TCCACCAATGATAGATTGCAAGAGTGAGTGCGATCGGAGATGTAAGGTGGCCCCTCGACCAAAGGCATGTCACAAATTCTGCGGTATCTGTTGCAATGCTTGCAAGTGTGTTCCATCGGGCACAAAGGGTAACCTAGATGAATGCCCCTGTTATCGGGACAAGAGGAGCTCCCAGGGCCATCCCAAGTGCCCTTAAACAA
GGAGAGGAGCATTTTGTTGGCTTGATCGCCATTGCTATCAATATAGTCTGAGACTTAAATAAACAGCCTTATAGGCTGATCCGAGCTTTGTAGTTTAAACGTATTAAAGGCTGAACGCTCGAAGCCCCAAATTAATGCATATTTTTGTCGTTGTGTAAAAACACTTGACTCTTATGGAATGA

>TRINITY_DN36156_c0_g1_i1 from sample A7 / Example unspliced isoform:

TTTTGAATGCCCCTCCTGAAACGTCCTTCCCCACACAGCTGTGACTTACTTGACACAGAGGGTAATAGTTAATGAAAACCCATTGGACCCCATAATACTCTGTATACATTGAAATTGACAGAGTACTATTCTGTTCTGTTCTGTATGGCCGTGTATTGAGAAATGTGTTAGTTGAATCACCACATGGACACAACTAATGC
TCTGCAGCTATTGCTACGCGGTTTTGTCCAGAGATATTGGGTTGCAACTTGCAACTCGTCAAATAGTATCTACAGGTACACTTTGACAACTGTATGCACCGAAATATTGGTGGCATGAAGCTTCCTGGAGGCCCGACAATGCAAATGGGCAAGTAAGTCCATTCATAGAGAGGCGAGCCATTATTAATCAAATGAAATTA
TGACCAAATTTGTAACCTATCTCCAGAAAAAATGGGTTTCTATGCTTATGATCTGTATTATGGAGGTACTCTGCATTCAATAATGTGGACCAGAACATATATGCACGTGAGAATCGCCAGCTGGGACGTTAAACATTTCTCAACTACCTGTGTAAGTCACCCTGCTTCTCTCCTTTATAAACCCACACCGCCCCGATTTC
TTGAGTATCAAGGGTTCAGCGATCTCCCTAATCAAGAAAAAGATGAAGAAGGCTAATGTTTGTGCGTATCTGTGCCTTGTGCTGGTTTTGATTGCAGCCATAGAATGGCAGgtcagtattatgatatttttcaggtcactggaaaatgtggggagcatgattcccttgtatattgttctgaacgtttgtattcatttgtt
ttacagGTTGTTCTTGGCACAGATGTGTGGGGTTTTGGAAATATTGAAAATGAAGATATGTCGGTTCTCAAAGGCTCACCTGCAGCTGCACCTGCTCCACCAATGATAGGTATAAAGCCATATCAGGCATACATAAGCTTTTTCTGCTTACAAACTTGTTTTCTCTGGTAATGGCTTTGATATTGTATATGACATTTTGT
GTGTCTATTTTGGGGACGAGCAGATTGCAAGAGTGAGTGCGATCGGAGATGTAAGGTGGCCCCTCGACCAAAGGCATGTCACAAATTCTGCGGTATCTGTTGCAATGCTTGCAAGTGTGTTCCATCGGGCACAAAGGGTAACCTAGATGAATGCCCCTGTTATCGGGACAAGAGGAGCTCCCAGGGCCATCCCAAGTGCC
CTTAAACAAGGAGAGGAGCATTTTGTTGGCTTGATCGCCATTGCTATCAATATAGTCTGAGACTTAAATAAACAGCCTTATAGGCTGATCCGAGCTTTGTAGTTTAAACGTATTAAAGGCTGAACGCTCGAAGCCCCAAATTAATGCATATTTTTGTCGTTGTGTAAAAACACTTGACTCTTATGGAATGA