sp|Q9FX99|Y1497_ARATH ----> Probable receptor-like protein kinase At1g49730
Intron 1 GCAAGTCCAG ... GCTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 4 | 0 | 1 |
| A2 | 0 | 4 | 0 | 0 |
| A3 | 0 | 2 | 0 | 0 |
| A4 | 15.38 | 11 | 0 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 20 | 4 | 0 | 1 |
| A7 | 45.45 | 6 | 1 | 5 |
| A8 | 0 | 3 | 0 | 0 |
| A9 | 26.67 | 11 | 1 | 4 |
| A10 | 13.33 | 13 | 0 | 2 |
>TRINITY_DN33380_c0_g1_i2 from sample A9 / Example spliced isoformGCGCTTTACTCGATTTTTTAAATATTTAAGCGCATCGAGATATCCGGCGCGGTATCTATCTGGTTTTGGACTGTGAAAGCACATGGTTTCTTTCCCGAAAGTTTTATCGTTTGCCTAAATCCGGTTTTTTACGGGTCGTATAAATGTTAATTTTCGGGAGAATCGCAATGACCCTGTCAGCCGTCACGAGACGATGCTGC
ACGAATCACATAGCAAATTTGAACGGCGGCTGCAGTTCATAATCCTTTAAAAATACAAAATTAAAACAGATTCACAGGTTTTCTTGGTTTCCGACACGAAACAGTCAAAACAAACATTCCTGCCAATTTTCTTTTAATTGCTAAAGACGAAAAATTAACTGTAACGAAGAAGCCACCATAACCTAATCTGAAATGAACTA
GAGAGTTGAGGCGGAGAAACGTCAAACATTATCGTTGAAATTATGAACTTCGTCCCTAGTAGGTACGGATAATTATTGTTCTGTCTGTCGTGTTGGATTTTTCTGCACTGTTACAGGCCGTTAGAAGCAACAGAATTTAGAAATCAAGCCTGCGTTTGTAGTGCAGTTTCCGCCTCTTTTTTCTAGTACATGAATGCATT
CAAAATTGTACCAGAATGTTAATGAATTCCGCAAGGCTTCCATGATCCATCCCGAACATAGAGCTTCCTGTAAATTTGAAAATGAGTGAGCTGCGTAAACATTTGGTTATCGGCTTAGTGATGATATGGTGGCTGAAAATCTGCTGTAGTCTTCCGCCTGTTACAGTTGCAGCTGTTACAGGTTGCCCTCTTGACTTCAG
TACCCTGGATTTTACAGCACTCACTTCAGTATGCTCTGAACAAAATATAGGTAGATGCTGCCGTTATGTTCATGCTTTGGTTGGAATCTCCCTGGCCCAATATGCAAATGCAACAAGTCAGATTGGGGTTTCTTCATTATTGACTGAGACTTGCAAGAGCACTCTATTGAATAATTTTTTATTGAGTGGACTCCCACTGA
ATGCAACAGCATTTTGTGGTTTGGGTACAAAGATAACTGTTGATCTTCTGTGCAAGGATCTTAAGACTGTTCAAGGAATTGAGAAAATCCCAAAGTTCAATGAGGTGCAGCTCAACTGCATGAAACCGATTTCCTCACTTGGAGAATGCCAAATCTGTTTGAATGCCAGTATCATGTTTATTCGCCATCTTCAGGTTGCA
GTGAATAACTTGACTTTGAGCATATGCAGGGATGCTACTTTTGTGGCCATTGCCAGCCATGGAAACTTGAAATTTGCAGTTGACAAAGCAAGCTGTTTTTTTGGGATTCAAGACCTTGGGAGTCAACCAGTCCTGATACAAAATGAAAAACCATTCTTCCCGGTGCCTTCATCAGCATTGTCACCAACTCCGGACAATCC
TCTAACTTCTGCTAATTCAACTGTTTCAAACGCTGACTCATCTCATTTTATCTTAATCATGGGTGTTGGAGTTGGACTTACAGGATTCGTTCTTTCTTTGTTTTTTCTCTTGCTTGTTCTAATACAAAGGAAAAGAAAAGAGCTGAAGAACTCTGAGGAATCTAATATATTTAATTGGACAAGGAACTTGATTCCAAACT
CATGCAGGCAATCAGAAATCTGGAGCGAAGGTCAGGCATCCATGTTCAGACGCTTCAGTTACAAGGAGATCAGAATGGCAACTAATGATTTTAGCACAATTATTGGAAGGGGGGGCTTCGGATCAGTTTATAAAGGGCGATTTCAAGATGGTTTTGTGGCTGCAGTGAAACAAATGGATGGTGTTTATGGACAAGGAAAA
AATGAATTCCTTAAGGAGATGGAAATTTTAGGGAGACTGCATCATCGGCATCTTGTCACTTTAAAAGGGTTTTGTTCAAAGCGATATGAGAGGTTTCTTGTATATGAATACATGGAAAATGGGAGTCTGAAAGAGCATCTTCATGGTCCAACAAAGACTTCCTTAAACTGGACAACCAGAATTCAAATTGCAGCAGATAT
TGCTGCCGCTTTGGAGTATCTTCATTTTTATTGTGATCCTCGCCTATGTCACGGGGATATCAAATCCAGCAATATCTTATTGGATGAGAACTTTGTTTCAAAGTTAGCCGATTTTGGTCTTGCTCGTGCTTTGCCAAGTGATGGGAATAATTCTCAGCATACGAATTCAGATATCCGAGGGACACCAGGTTATATGGATC
CAGAATATATTATTACTCAACAGCTAACAGTCAAGAGCGATATATACAGTTATGGGGTTCTCCTTCTGGAACTTATCAGCGGTAGAAAGGCTATTTATGAAAATACAAACCTGGTTGAATGGGCCCAGAAATATATCTTGGAAGAATCTGATTGTGCCAAAATGGTTGATCCAATCTTGGCAGGTACATATCATTTTGAA
GAACTGAAGTGTGTGATCAACATAGCAAGAATGTGCACCCAAAGAGAAGGTGCGGCAAGGCCCTCAATAAGGAAAGTACTCCATCTGCTACATAATAAGCTAGATGTAGCTAGCCCTGATGTCAATAGGAGCAGAAGATGAAGAGGAATGATACAGAAAGAAACAACCTAAGCAACCAAATGACATGCATAGTTCAGATG
GTTAAAATTTGTCCAACGCGATTCTAATCTTCATCTCTTGAAGTTTGTTTCTGCTGAAGATTGCAACAGAGGAAATAGAAGAGATAAATCTTCAGCAGAGGAAATAGAAGAGATGGTGTGATTCTGGTATCAAGTCCAACGTTGCAAAGACTACTGTCTTTATGTCGCCATTCAATGCCCACAAGTAATTCCGTCTTTGA
ACTAAATGCTTGATTGCAGCTATTTATTTTCATCTGGAAAAGGATTAGAAATCCTGCTGATGCTACCCTTATTTCACCAACTCTCATGGAGTCTAATATGTAATAATTCATGTGATTCTCTTTGCTAATTCGAAAAAGGAATCCTTACGGGACCTTCCTTAAAGAATTTGAGCAATTAATTTATCTAAAGGCATTAACTT
CTTCCCGTCCGAAGCCAGAAATTCGCATTGGTCAAGGTGTTTAGGTTTATAATAGCATGCCACTTGGAAAATCGTGCAACAGAACTGAAGATAACATGACTTATCAATTTTTTTTTTAAAGATTTCAAGTAATTGTGTGTAAG
>TRINITY_DN33380_c0_g1_i3 from sample A9 / Example unspliced isoform:AGCAGATATTGCTGCCGCTTTGgcaagtccagaaagtgccaattaagagtagtgtttattcatcattttaaagttttctttggaggtttctttcatttccttacttttcatgcttgttcagGAGTATCTTCATTTTTATTGTGATCCTCGCCTATGTCACGGGGATATCAAATCCAGCAATATCTTATTGGATGAGAACT
TTGTTTCAAAGTTAGCCGATTTTGGTCTTGCTCGTGCTTTGCCAAGTGATGGGAATAATTCTCAGCATACGAATTCAGATATCCGAGGGACACCAGGTTATATGGATCCAGAATATATTATTACTCAACAGCTAACAGTCAAGAGCGATATATACAGTTATGGGGTTCTCCTTCTGGAACTTATCAGCGGTAGAAAGGCT
ATTTATGAAAATACAAACCTGGTTGAATGGGCCCAGAAATATATCTTGGAAGAATCTGATTGTGCCAAAATGGTTGATCCAATCTTGGCAGGTACATATCATTTTGAAGAACTGAAGTGTGTGATCAACATAGCAAGAATGTGCACCCAAAGAGAAGGTGCGGCAAGGCCCTCAATAAGGAAAGTACTCCATCTGCTACA
TAATAAGCTAGATGTAGCTAGCCCTGATGTCAATAGGAGCAGAAGATGAAGAGGAATGATACAGAAAGAAACAACCTAAGCAACCAAATGACATGCATAGTTCAGATGGTTAAAATTTGTCCAACGCGATTCTAATCTTCATCTCTTGAAGTTTGTTTCTGCTGAAGATTGCAACAGAGGAAATAGAAGAGATAAATCTT
CAGCAGAGGAAATAGAAGAGATGGTGTGATTCTGGTATCAAGTCCAACGTTGCAAAGACTACTGTCTTTATGTCGCCATTCAATGCCCACAAGTAATTCCGTCTTTGAACTAAATGCTTGATTGCAGCTATTTATTTTCATCTGGAAAAGGATTAGAAATCCTGCTGATGCTACCCTTATTTCACCAACTCTCATGGAGT
CTAATATGTAATAATTCATGTGATTCTCTTTGCTAATTCGAAAAAGGAATCCTTACGGGACCTTCCTTAAAGAATTTGAGCAATTAATTTATCTAAAGGCATTAACTTCTTCCCGTCCGAAGCCAGAAATTCGCATTGGTCAAGGTGTTTAGGTTTATAATAGCATGCCACTTGGAAAATCGTGCAACAGAACTGAAGAT
AACATGACTTATCAATTTTTTTTTTAAAGATTTCAAGTAATTGTGTGTAAG
Intron 2 GTTATGGGGT ... ATCTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.13 | 6.2 | 7 | 17 |
| A2 | 75 | 1 | 4 | 2 |
| A3 | 100 | 0 | 3 | 3 |
| A4 | 57.77 | 2.6 | 4 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 70 | 5.2 | 8 | 16 |
| A7 | 77.07 | 5.6 | 17 | 18 |
| A8 | 62.98 | 5.6 | 4 | 15 |
| A9 | 65.85 | 7 | 11 | 16 |
| A10 | 100 | 0 | 6 | 4 |
>TRINITY_DN27201_c0_g1_i2 from sample A6 / Example spliced isoformAGGGCGATTTCAAGATGGTTTTGTGGCTGCAGTGAAACAAATGGATGGTGTTTATGGACAAGGAAAAAATGAATTCCTTAAGGAGATGGAAATTTTAGGGAGACTGCATCATCGGCATCTTGTCACTTTAAAAGGGTTTTGTTCAAAGCGATATGAGAGGTTTCTTGTATATGAATACATGGAAAATGGGAGTCTGAAAG
AGCATCTTCATGGTCCAACAAAGACTTCCTTAAACTGGACAACCAGAATTCAAATTGCAGCAGATATTGCTGCCGCTTTGGAGTATCTTCATTTTTATTGTGATCCTCGCCTATGTCACGGGGATATCAAATCCAGCAATATCTTATTGGATGAGAACTTTGTTTCAAAGTTAGCCGATTTTGGTCTTGCTCGTGCTTTG
CCAAGTGATGGGAATAATTCTCAGCATACGAATTCAGATATCCGAGGGACACCAGGTTATATGGATCCAGAATATATTATTACTCAACAGCTAACAGTCAAGAGCGATATATACAGTACATATCATTTTGAAGAACTGAAGTGTGTGATCAACATAGCAAGAATGTGCACCCAAAGAGAAGGTGCGGCAAGGCCCTCAAT
AAGGAAAGTACTCCATCTGCTACATAATAAGCTAGATGTAGCTAGCCCTGATGTCAATAGGAGCAGAAGATGAAGAGGAATGATACAGAAAGAAACAACCTAAGCAACCAAATGACATGCATAGTTCAGATGGTTAAAATTTGTCCAACGCGATTCTAATCTTCATCTCTTGAAGTTTGTTTCTGCTGAAGATTGCAACA
GAGGAAATAGAAGAGATAAATCTTCAGCAGAGGAAATAGAAGAGATGGTGTGATTCTGGTATCAAGTCCAACGTTGCAAAGACTACTGTCTTTATGTCGCCATTCAATGCCCACAAGTAATTCCGTCTTTGAACTAAATGCTTGATTGCAGCTATTTATTTTCATCTGGAAAAGGATTAGAAATCCTGCTGATGCTACCC
TTATTTCACCAACTCTCATGGAGTCTAATATGTAATAATTCATGTGATTCTCTTTGCTAATTCGAAAAAGGAATCCTTACGGGACCTTCCTTAAAGAATTTGAGCAATTAATTTATCTAAAGGCATTAACTTCTTCCCGTCCGAAGCCAGAAATTCGCATTGGTCAAGGTGTTTAGGTTTATAATAGCATGCCACTTGGA
AAATCGTGCAACAGAACTGAAGATAACATTACTTATCAATTTTTTTTTTAAAGATTTC
>TRINITY_DN27201_c0_g1_i3 from sample A6 / Example unspliced isoform:AGGGCGATTTCAAGATGGTTTTGTGGCTGCAGTGAAACAAATGGATGGTGTTTATGGACAAGGAAAAAATGAATTCCTTAAGGAGATGGAAATTTTAGGGAGACTGCATCATCGGCATCTTGTCACTTTAAAAGGGTTTTGTTCAAAGCGATATGAGAGGTTTCTTGTATATGAATACATGGAAAATGGGAGTCTGAAAG
AGCATCTTCATGGTCCAACAAAGACTTCCTTAAACTGGACAACCAGAATTCAAATTGCAGCAGATATTGCTGCCGCTTTGGAGTATCTTCATTTTTATTGTGATCCTCGCCTATGTCACGGGGATATCAAATCCAGCAATATCTTATTGGATGAGAACTTTGTTTCAAAGTTAGCCGATTTTGGTCTTGCTCGTGCTTTG
CCAAGTGATGGGAATAATTCTCAGCATACGAATTCAGATATCCGAGGGACACCAGGTTATATGGATCCAGAATATATTATTACTCAACAGCTAACAGTCAAGAGCGATATATACAgttatggggttctccttctggaacttatcagcggtagaaaggctatttatgaaaatacaaacctggttgaatgggcccagaaata
tatcttggaagaatctgattgtgccaaaatggttgatccaatcttggcagGTACATATCATTTTGAAGAACTGAAGTGTGTGATCAACATAGCAAGAATGTGCACCCAAAGAGAAGGTGCGGCAAGGCCCTCAATAAGGAAAGTACTCCATCTGCTACATAATAAGCTAGATGTAGCTAGCCCTGATGTCAATAGGAGCA
GAAGATGAAGAGGAATGATACAGAAAGAAACAACCTAAGCAACCAAATGACATGCATAGTTCAGATGGTTAAAATTTGTCCAACGCGATTCTAATCTTCATCTCTTGAAGTTTGTTTCTGCTGAAGATTGCAACAGAGGAAATAGAAGAGATAAATCTTCAGCAGAGGAAATAGAAGAGATGGTGTGATTCTGGTATCAA
GTCCAACGTTGCAAAGACTACTGTCTTTATGTCGCCATTCAATGCCCACAAGTAATTCCGTCTTTGAACTAAATGCTTGATTGCAGCTATTTATTTTCATCTGGAAAAGGATTAGAAATCCTGCTGATGCTACCCTTATTTCACCAACTCTCATGGAGTCTAATATGTAATAATTCATGTGATTCTCTTTGCTAATTCGA
AAAAGGAATCCTTACGGGACCTTCCTTAAAGAATTTGAGCAATTAATTTATCTAAAGGCATTAACTTCTTCCCGTCCGAAGCCAGAAATTCGCATTGGTCAAGGTGTTTAGGTTTATAATAGCATGCCACTTGGAAAATCGTGCAACAGAACTGAAGATAACATTACTTATCAATTTTTTTTTTAAAGATTTC