sp|Q9ZPI5|MFP2_ARATH ----> Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2

Intron 1 GTAGGCTGCA ... ATATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	22.45	38	7	11
A2	10.34	26	0	3
A3	6.45	29	1	2
A4	21.95	32	0	9
A5	0	5	0	0
A6	4.35	22	0	1
A7	13.04	40	0	6
A8	11.11	24	0	3
A9	4.44	43	0	2
A10	2.5	39	0	1

>TRINITY_DN115621_c0_g2_i4 from sample A1 / Example spliced isoform

TAAGAATTCGATCCACGGTGAGATCCTTGCTAAGTTCGATCCAGAAATCCTTGATTCCCATTCCCCGCGTGATCCAGAGTTCAATTCCCGTTCTCTGAAAAAATGGCCAGAGCGAGAGTCACAGTAGAGAAAGGAACTGACGGAGTTGCAGTAATAACAGTCGATTACCCGCCCGTTAATGCTATAAGCACTGCAGTTCA
GAATGCTTTGTTCAGGACTTTAACTCAGCTGCATTCAGACCAGGGCGTTAAAGCTATCGTGTTGACAGGAGCAAATGGAAAATTCTGTGGCGGAGGAGACATTAGAGGATTTCAAAAAGTTCAAGAAACAGGGTCTGATGGTGAAGAATTAGTTGTATCTCGAGTTGCTCTTATGAATGATCTGATCGAAGGAGGTCCAA
AGCCTATTGTTGCAGCGATTGAAGGTTTTGCACTTGGTGGTGGCTTGGAGTTGGCAATGGCTTGCAATGCGCGTATAACTGTCCCCAATGTTCAACTTGGTCTTGTTGAACTTCAACTTGGCATCATTCCAGGACTCGGAGGTACTCAACGATTGCCTCGATTGGTTGGACTCCAACGTGCAATTGACATGTTACTGGCT
TCAAAGACATTGGATTCTAGAGAGGCACTTAAAGTTGGACTTGTAGACGATGTTGTGCCTCATTCAGACATTCTTGCAGCAGCTCGGAAGTGGGCACTAGACATTCATGAACGTCGTCATCCATGGCAACGGTCTCTCCAGAGAGTGGACAAGCTGGGTTCATTACCAAAAGCATTGGATGTGTTGGAGAATGCCAGAGC
TAAAATAAAGAAGATATATACTAATGTTTCCTACCCTTCAGTATTGTTGGATGTAATTGAGGAGGGACTGGTGAATGGTGCTGTTGCAGGAGTTATATTAGAAGGGGAAGCATGCCAAGATTTGGTCAAAACTCCCGAAGCAAAAGGACTCATGCATGTGTTTTTTGCACAACGCTCATCTTCAAAGATTCCAGGAATTA
CAGATCAAGGATTGATTCCTCATCCAATTAGAAAAGCAGCTGTAGTTGGAGGTGCTCTTATGGGTTCAGGAATAGCAACTGCTCTGGCTTTGAGTAAAATTCCAGTTATTTTGAAGGAAGTTGATTCAAAGCAATTAGATGCTAGCATCCGGAAAATACATGCCAATTTGAAAAACCGTGCTTCAAGTGGAAAAATTACA
GAGGAGGCGGCAAAACGTAGTATGGCACTTGTAAAGGGTGTTCTAGACTATGAGGATTTCTACAATGTAGATATTGTAATTGAGGCTGTGACTGAAAATATACCTTTGAAACAAAAGATATTTTATGAGTTGGAGCAGGTGTGCCCTTCTCATTGTATCTTAGCTACAAATACATCATCAATTGATCTGGAAATAATTGG
GGCAAACATTAAATCTCAGGACCGTTTGATTGGTGCTCATTTCTTCAGCCCTGCACATGTCATGCGACTGCTTGAGATAGTGCGCACTAATAAGACGTCTCCACAAACCATAGTAGACTTACTTGGGCTTTCAAAATCTTTGAAAAAGGTGCCAGTTTTGGTGAAAAGCTCACCTGGATTTGCAGTGAACCGTGTATTTT
TCCCCTATGGAATGGGTGCACATTTTCTTGCTGATCTTGGTGTAGACCCTTACAGAATCGATGCTGTGATCAAAGGATTTGGAATGCCTATGGGTCCATTTAGGATGGCAGATCTTGGTGGTTTTCAAACTGGTATTCTAGTTGGCAAAATATGGTTGCAAGCTTATCCAGATCGTGTATATGCATCACCCCTCATGACT
TTACAGTATAATGATAAGCGTCTAGGTGAGAGCAATGGGAAGGGATACTATAATTATCATGGCTCGCGAAAGGAGCACCCTGCACCAGAATTGAACCAATATCTCGAAAGATCTCGCAGTCTTGCTGGGCTTTCGCCTCCTGACAATATCGCAGACATCACAGATCAAGAAATAACGGAGATGGTCTTTTTTCCTGTAAT
TAACGAGGCATGCCGCGTTCTTGAAGAAAAAGTTGTAATTAGCAGTTCAGATCTTGACATTGCTTCAGTATTGGGAATGGCCTTTCCAGCATACAGGGGGGGAATTGTCTTTTGGGCAGATCATATAGGGGCAGAATATATCTTTTCCAAATTGCTGAAATGGGCAAACATGTATGGCAACTTTTTCAAACCATCCAAAG
CATTAGAAAAGTGCGCCACGCAGAAAATTCGTTTGGCACAACTTCCATTGCAAGGTGCATCTCGACTGTAGTAAAAAATCCATGGAAGCTAATGTTATCGAGGTCAGAGGGTCTGGAAGGTCGAAGATCACAAAAATTTCTCTGAATCATAATTATCTTGTTTATTGCAATATGTTAATTTTTCCATTCAAATTATCACT
TGTCCCAACACAAAAAGGAGCAAAGAGTGAAATCATGGAGCAACGAGTGAAATCATGGGTGTAGTATGTTTGTCTTTCCCAAGTCCAGGATCCCACGGCTTACTATCCGTTGAGAATAAAGTTAGGAGGACTTACCAGATCAATTTATCATGTGATTTTATATGCATGATTGGTTCTGGCTTGTAGAAGAACATGTATGA
ATTATATTTTCGGTATCATTTGGAAGGAAATAGAAAATAGTCTACAAATACAACACCTTACAGTTCAGAAGCTTTATCCCTGCTATAAGATACATTATTTCATCAATAAATGAAGTATCTAAGTTGTTGCAATTTCTGGCTGAATCCTAGAATAATCTACAGTTCAGAAGTCATAAAATAGTAAATATATTATTTTATCA
GTAAATGGAGTATCTAAGTTGTTGCAACTGATGGCTGAATTCCGAGAATAAATTTCATCATAATTAGCTTCTTGGCTCTTGTTACTAATTATTTTTGGAAATCTGGCGTTGCAATTCAAAGC

>TRINITY_DN115621_c0_g2_i2 from sample A1 / Example unspliced isoform:

CTTTTGTCTTTGGTAGGAAGGGGAAGCATGCCAAGATTTGGTCAAAACTCCCGAAGCAAAAGGACTCATGCATGTGTTTTTTGCACAACGCTCATCTTCAAAGgtaggctgcaattacaaagaagtttattatgctttatttttttatttattatttccgctcaagaaaatgcatcttatatactttcaaatttcacgaa
gtttgcaccaagtgttacatgagatgactgaagagccactggaggtacctattcctacaataggcaagaagggccatcatgtcagccatatccccaatctcctaacatctttcctgaagcaattctagaattttaaataaaatatattttgtattaagtaaattgcatatttgcagATTCCAGGAATTACAGATCAAGGA
TTGATTCCTCATCCAATTAGAAAAGCAGCTGTAGTTGGAGGTGCTCTTATGGGTTCAGGAATAGCAACTGCTCTGGCTTTGAGTAAAATTCCAGTTATTTTGAAGGAAGTTGATTCAAAGCAATTAGATGCTAGCATCCGGAAAATACATGGTTAGTTGATACTAAAAACTTGCTGCTCTCTAGTAGTAGGGATCATCCT
TAAAATTATGTTAAGGC