NA ----> NA
Intron 1 GTAAGGCATA ... TATGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0.6 | 0 | 0 |
| A2 | 100 | 0 | 0 | 6 |
| A3 | 33.33 | 1 | 0 | 1 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 94.98 | 0.6 | 7.6 | 14 |
| A8 | 89.09 | 0.6 | 3 | 6 |
| A9 | 56.45 | 2 | 0.2 | 5 |
| A10 | 100 | 0 | 10.6 | 13 |
>TRINITY_DN46177_c0_g1_i1 from sample A7 / Example spliced isoformGTATTTCCAAGAACTACTGCCGTCTCTCCGACCGAGCTTGGATGCGAATGTTTCCATGCCGAATCCCTTCTCCGATCCAGATTTCAACAGTTCTCACTCTCAATTCAATTCGGAGCCGAACAATCAAAGATTTCGGACGGCCAGCGCAGGATTCTCTTAATAATGTGCCCATTGATGTTTGTTCGCATACCACCTGACTG
AGGTTTTCTGAGAGAAGATGGCCAGCTGGTATTGCAATAGAAGTTAAAACCCTCTTCACAAGAAATGCCAGTACTCATCCACAATTGAAAGCTACTTGTGGATGAGTACTGGTATCTTCTTGTTAACAGGGTTCTTTAGGTGCCTACTGAAGATACGAGCATTCATCCACAATGGAAAGCCTATATGCGAATGGGTACTG
GTATCTTCTTGTGAAATACACGGTTGTTTGGGTGCACATGCCCAGCGGAGGTTTTCGAAGAGCACATGCCCAGCGGCTATTGCAATCAAACCCTGTTTACAAGAAGATACCAGTATTCAGCCATCGACATCTTTAGAGTTTG
>TRINITY_DN46177_c0_g1_i2 from sample A7 / Example unspliced isoform:GTATTTCCAAGAACTACTGCCGTCTCTCCGACCGAGCTTGGATGCGAATGTTTCCATGCCGAATCCCTTCTCCGATCCAGATTTCAACAGTTCTCACTCTCAATTCAATTCGGAGCCGAACAATCAAAGATTTCGGACGGCCAGCGCAGGATTCTCTTAATAATGTGCCCATTGATGTTTgtaaggcatatatgatatac
tctgcttctgaacattatcgattgcagaaatgtggattactggttgagcagtgcctttatgctgcagGTTCGCATACCACCTGACTGAGGTTTTCTGAGAGAAGATGGCCAGCTGGTATTGCAATAGAAGTTAAAACCCTCTTCACAAGAAATGCCAGTACTCATCCACAATTGAAAGCTACTTGTGGATGAGTACTGGT
ATCTTCTTGTTAACAGGGTTCTTTAGGTGCCTACTGAAGATACGAGCATTCATCCACAATGGAAAGCCTATATGCGAATGGGTACTGGTATCTTCTTGTGAAATACACGGTTGTTTGGGTGCACATGCCCAGCGGAGGTTTTCGAAGAGCACATGCCCAGCGGCTATTGCAATCAAACCCTGTTTACAAGAAGATACCAG
TATTCAGCCATCGACATCTTTAGAGTTTG
Intron 2 GCAGTTTCAA ... CGTGTTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80 | 0.5 | 2 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 100 | 0 | 1 | 0 |
| A7 | 57.14 | 3 | 3 | 5 |
| A8 | 50 | 1 | 1 | 1 |
| A9 | 42.86 | 2 | 2 | 1 |
| A10 | 66.66 | 3 | 1 | 5 |
>TRINITY_DN46177_c0_g1_i1 from sample A7 / Example spliced isoformGTATTTCCAAGAACTACTGCCGTCTCTCCGACCGAGCTTGGATGCGAATGTTTCCATGCCGAATCCCTTCTCCGATCCAGATTTCAACAGTTCTCACTCTCAATTCAATTCGGAGCCGAACAATCAAAGATTTCGGACGGCCAGCGCAGGATTCTCTTAATAATGTGCCCATTGATGTTTGTTCGCATACCACCTGACTG
AGGTTTTCTGAGAGAAGATGGCCAGCTGGTATTGCAATAGAAGTTAAAACCCTCTTCACAAGAAATGCCAGTACTCATCCACAATTGAAAGCTACTTGTGGATGAGTACTGGTATCTTCTTGTTAACAGGGTTCTTTAGGTGCCTACTGAAGATACGAGCATTCATCCACAATGGAAAGCCTATATGCGAATGGGTACTG
GTATCTTCTTGTGAAATACACGGTTGTTTGGGTGCACATGCCCAGCGGAGGTTTTCGAAGAGCACATGCCCAGCGGCTATTGCAATCAAACCCTGTTTACAAGAAGATACCAGTATTCAGCCATCGACATCTTTAGAGTTTG
>TRINITY_DN46177_c0_g1_i3 from sample A7 / Example unspliced isoform:GTATTTCCAAGAACTACTGCCGTCTCTCCGACCGAGCTTGGATGCGAATGTTTCCATGCCGAATCCCTTCTCCGATCCAGATTTCAACAGTTCTCACTCTCAATTCAATTCGGAGCCGAACAATCAAAGgcagtttcaaaactttcgttgatcctttgtatttttgtgagccgaaggctataaaagaattatttaatgcc
cgcctttaactttatattcttccgtgtttcagATTTCGGACGGCCAGCGCAGGATTCTCTTAATAATGTGCCCATTGATGTTTGTAAGGCATATATGATATACTCTGCTTCTGAACATTATCGATTGCAGAAATGTGGATTACTGGTTGAGCAGTGCCTTTATGCTGCAGGTTCGCATACCACCTGACTGAGGTTTTCTG
AGAGAAGATGGCCAGCTGGTATTGCAATAGAAGTTAAAACCCTCTTCACAAGAAATGCCAGTACTCATCCACAATTGAAAGCTACTTGTGGATGAGTACTGGTATCTTCTTGTTAACAGGGTTCTTTAGGTGCCTACTGAAGATACGAGCATTCATCCACAATGGAAAGCCTATATGCGAATGGGTACTGGTATCTTCTT
GTGAAATACACGGTTGTTTGGGTGCACATGCCCAGCGGAGGTTTTCGAAGAGCACATGCCCAGCGGCTATTGCAATCAAACCCTGTTTACAAGAAGATACCAGTATTCAGCCATCGACATCTTTAGAGTTTG