sp|P42698|DR111_ARATH ----> DNA-damage-repair/toleration protein DRT111, chloroplastic

Intron 1 GTTCAGTGAG ... AAGTTGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	68.42	12	28	24
A2	59.48	31	57	34
A3	65.1	26	55	42
A4	67.8	19	43	37
A5	54.64	22	34	19
A6	51.76	212	315	140
A7	58.3	162	282	171
A8	58.55	206	350	232
A9	55.15	172	267	156
A10	54.69	140	218	120

>TRINITY_DN111982_c0_g1_i3 from sample A1 / Example spliced isoform

AATGTGCTCTTCGAAGCCGTGCGAGTTCTGGTATAAATTTAAAACATACATCGAATCCGAAGGAAAAACGGGGAAAAAATAAAAGCACATCCTTGTCATGCTTTTACAGAAGACGGGCGCTCCGTCTGTGTGTGGAGTTGCAGAGGACGACGGCGAGGAGGAGGGGGAAGAAGAAAAAACACAGAAGATCAGAGGTTGAG
CAGCGGAAACCGTCTTGCAAAGGATAAATACATTCATCGGATCTTGAAATATGCTGGGCGGACTGTATGGGGACTTACCCCCGCCATCTTCTTCCTCATCTACGGTGGCGGAAGAAGAAAACAACAACAATTCAATGTGGTCGAGCAGTGCGAAGATGGCTCCTTCCGCTCTGCGGAAGCCCACCACACTGTTCGCATCC
CCATCTATCTTGAGGAACCAGCAGCCCTCAAGCAGCAGCAAGCCCAAAACTTCAACCTCCTCCCAGCCCCAGCCCCGAGTCACGTACAACGACGGAACTGTGAGCCCGCTGGAGGCCTCTGCCGAGATGAAGCCTCTTTCACCCCCCCTCTCCGTTCAGACGGCCTTGGTGGGCGTCACCTCCACGGTCGTAGAAGAGTA
CGACCCCAGCCGGCCCAACGACTACGAGGATTATCGACGCGAGCGGCGCCGCCGGGCTGTCGAGGCGGAGATGCGCAGGGAGCTGGAGCGGAGGCGCTTGGAGGAGGAGGAGCGGGAGCGGGAACTCGTGGCGATGCGGGAGAAGGAAGAAACCGCTTCCGCTGCGGAGAAGGACTCCGAGAACTCCCGCGTGGCCGCGC
TGAATATAAGCGGGGAGGATGCCTGGAAGCGGAGGGCAGCCATGGGGCGGGGCGATGGCGGCGGCGGTCAGGTGCAGCCCAGATCGCCTTCACCGCCGCCCAGCGGCGCAGATGTGGGTGGTTTTACTATTGGCAAGTCTGGGACCGTGGGACTGGGTGTCGGGGCCGGCGGACATATGACCGCCGCGCAGAGGATGATG
GCCAGGATGGGGTGGAAGGAAGGCCAGGGTTTGGGCAAACAGGAGCAGGGGATCACCACGCCTCTTATGGCCAAGAAGACTGATAAGAGGGCAGGTGTTATTGTCAATGCCAGCGAGGCCAGGCCCGAAAAGAAGATTAAGAGCGCCAATATCACAGCTCCGCCCACCAAGGTTCTGCTCCTTAGAAATATGGTTGGTCC
AGGAGAAGTGGATGATGAACTAGAAGATGAAGTTGCCTCAGAGTGTGCTAAGTATGGAACAGTGACTCGTGTGCTGATCTTTGAGATCACTGAACCGGATTTCCCAGTGGATGAAGCTGTTCGAATCTTTGTGCACTTTGAGCGATCTGAGCAAACAACTAAGGCTTTGGTTGACCTTGATGGCCGTTTTTTTGCTGGCA
GGGTAGTCCATGCAACCTTCTATGATGAAGAAAAGTTTAACAGAAATGAGTTGGCACCTGCACCAGGAGAGATACCTGGCTACCCTCAGTTTGACAAATAGTGAATGATTGTGATGCGACATGGAGAAGATTGTGATTAGAGCTATAGGTGACAGATGACGTCAAACCGAACTACAACTTTGAATGACGCAATTTTGCCA
AATTCTGGAGTTTGGCAAAACCATTGTTTGGTGGCATCTTTGTATCTTTTGATAATATTGCTTTGGCATTAAACTTTTAATGTGCTCCCGGCGTCATCATTTCCATCTGTTTTTTTGTAATATGTGCTCATAGAAATGTAAAAAGCATTTGTTGTCTGCTTACAAGCCAAGCTTTTGGGTTGAACTAAACATGCAGAAGT
TGAGCTAGTAGGGTATCATACTAATGTTTTGAGCTATAATGGATTTATGTTAGCCAGTGGGCCTGTTTTTATTGCGTCTTAATTACATTTATCAAGAAAAAAAAA

>TRINITY_DN111982_c0_g1_i2 from sample A1 / Example unspliced isoform:

AATGTGCTCTTCGAAGCCGTGCGAGTTCTGGTATAAATTTAAAACATACATCGAATCCGAAGGAAAAACGGGGAAAAAATAAAAGCACATCCTTGTCATGCTTTTACAGAAGACGGGCGCTCCGTCTGTGTGTGGAGTTGCAGAGGACGACGGCGAGGAGGAGGGGGAAGAAGAAAAAACACAGAAGATCAGAGGTTGAG
CAGCGGAAACCGTCTTGCAAAGGATAAATACATTCATCGGATCTTGAAATATGCTGGGCGGACTGTATGGGGACTTACCCCCGCCATCTTCTTCCTCATCTACGGTGGCGGAAGAAGAAAACAACAACAATTCAATGTGGTCGAGCAGTGCGAAGATGGCTCCTTCCGCTCTGCGGAAGCCCACCACACTGTTCGCATCC
CCATCTATCTTGAGGAACCAGCAGCCCTCAAGCAGCAGCAAGCCCAAAACTTCAACCTCCTCCCAGCCCCAGCCCCGAGTCACGTACAACGACGGAACTGTGAGCCCGCTGGAGGCCTCTGCCGAGATGAAGCCTCTTTCACCCCCCCTCTCCGTTCAGACGGCCTTGGTGGGCGTCACCTCCACGGTCGTAGAAGAGTA
CGACCCCAGCCGGCCCAACGACTACGAGGATTATCGACGCGAGCGGCGCCGCCGGGCTGTCGAGGCGGAGATGCGCAGGGAGCTGGAGCGGAGGCGCTTGGAGGAGGAGGAGCGGGAGCGGGAACTCGTGGCGATGCGGGAGAAGGAAGAAACCGCTTCCGCTGCGGAGAAGGACTCCGAGAACTCCCGCGTGGCCGCGC
TGAATATAAGCGGGGAGGATGCCTGGAAGCGGAGGGCAGCCATGGGGCGGGGCGATGGCGGCGGCGGTCAGGTGCAGCCCAGATCGCCTTCACCGCCGCCCAGCGGCGCAGATGTGGGTGGTTTTACTATTGGCAAGTCTGGGACCGTGGGACTGGGTGTCGGGGCCGGCGGACATATGACCGCCGCGCAGAGGATGATG
GCCAGGATGGGGTGGAAGGAAGGCCAGGGTTTGGGCAAACAGGAGCAGGGGATCACCACGCCTCTTATGGCCAAGAAGACTGATAAGAGGGCAGGTGTTATTGTCAATGCCAGCGAGGCCAGGCCCGAAAAGAAGATTAAGAGCGCCAATATCACAGCTCCGCCCACCAAGGTTCTGCTCCTTAGAAATATGGTTGGTCC
AGGAGAAGTGGATGATGAACTAGAAGATGAAGTTGCCTCAGAGTGTGCTAAGTATGGAACAGTGACTCGTGTGCTGATCTTTGAGATCACTGAACCGGATTTCCCAGTGGATGAAGCTGTTCGAATCTTTGTGCACTTTGAGCGATCTGAGCAAACAACTAAGGCTTTGGTTGACCTTGATGGCCGTTTTTTTGCTGGCA
GGGTAGTCCATGCAACCTTCTATGATGAAGAAAAGTTTAACAGAAATGAGTTGGCACCTGCACCAGGAGAGATACCTGGCTACCCTCAGTTTGACAAATAGTGAATGgttcagtgagccctttgtacctgcttgctaatttttaacaaagcaaggttctgagtttggctaatctactaaagttgaaagATTGTGATGCGA
CATGGAGAAGATTGTGATTAGAGCTATAGGTGACAGATGACGTCAAACCGAACTACAACTTTGAATGACGCAATTTTGCCAAATTCTGGAGTTTGGCAAAACCATTGTTTGGTGGCATCTTTGTATCTTTTGATAATATTGCTTTGGCATTAAACTTTTAATGTGCTCCCGGCGTCATCATTTCCATCTGTTTTTTTGTA
ATATGTGCTCATAGAAATGTAAAAAGCATTTGTTGTCTGCTTACAAGCCAAGCTTTTGGGTTGAACTAAACATGCAGAAGTTGAGCTAGTAGGGTATCATACTAATGTTTTGAGCTATAATGGATTTATGTTAGCCAGTGGGCCTGTTTTTATTGCGTCTTAATTACATTTATCAAGAAAAAAAAA

Intron 2 GTGAGTATCA ... CATGGAGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	7.69	24	3.8	2
A2	8.11	34	2.7	3
A3	12.5	42	5.5	6
A4	5.13	37	4.8	2
A5	26.92	19	2.3	7
A6	18.13	140	13.3	31
A7	14	172	19.2	28
A8	15.16	235	19.2	42
A9	15.22	156	14.3	28
A10	15.38	121	9.7	22

>TRINITY_DN108045_c0_g1_i2 from sample A3 / Example spliced isoform

TTAAAACATACATCGAATCCGAAGGAAAAACGGGGAAAAAATAAAAGCACATCCTTGTCATGCTTTTACAGAAGACGGGCGCTCCGTCTGTGTGTGGAGTTGCAGAGGACGACGGCGAGGAGGAGGGGGAAGAAGAAAAAACACAGAAGATCAGAGGTTGAGCAGCGGAAACCGTCTTGCAAAGGATAAATACATTCATC
GGATCTTGAAATATGCTGGGCGGACTGTATGGGGACTTACCCCCGCCATCTTCTTCCTCATCTACGGTGGCGGAAGAAGAAAACAACAACAATTCAATGTGGTCGAGCAGTGCGAAGATGGCTCCTTCCGCTCTGCGGAAGCCCACCACACTGTTCGCATCCCCATCTATCTTGAGGAACCAGCAGCCCTCAAGCAGCAG
CAAGCCCAAAACTTCAACCTCCTCCCAGCCCCAGCCCCGAGTCACGTACAACGACGGAACTGTGAGCCCGCTGGAGGCCTCTGCCGAGATGAAGCCTCTTTCACCCCCCCTCTCCGTTCAGACGGCCTTGGTGGGCGTCACCTCCACGGTCGTAGAAGAGTACGACCCCAGCCGGCCCAACGACTACGAGGATTATCGAC
GCGAGCGGCGCCGCCGGGCTGTCGAGGCGGAGATGCGCAGGGAGCTGGAGCGGAGGCGCTTGGAGGAGGAGGAGCGGGAGCGGGAACTCGTGGCGATGCGGGAGAAGGAAGAAACCGCTTCCGCTGCGGAGAAGGACTCCGAGAACTCCCGCGTGGCCGCGCTGAATATAAGCGGGGAGGATGCCTGGAAGCGGAGGGCA
GCCATGGGGCGGGGCGATGGCGGCGGCGGTCAGGTGCAGCCCAGATCGCCTTCACCGCCGCCCAGCGGCGCAGATGTGGGTGGTTTTACTATTGGCAAGTCTGGGACCGTGGGACTGGGTGTCGGGGCCGGCGGACATATGACCGCCGCGCAGAGGATGATGGCCAGGATGGGGTGGAAGGAAGGCCAGGGTTTGGGCAA
ACAGGAGCAGGGGATCACCACGCCTCTTATGGCCAAGAAGACTGATAAGAGGGCAGGTGTTATTGTCAATGCCAGCGAGGCCAGGCCCGAAAAGAAGATTAAGAGCGCCAATATCACAGCTCCGCCCACCAAGGTTCTGCTCCTTAGAAATATGGTTGGTCCAGGAGAAGTGGATGATGAACTAGAAGATGAAGTTGCCT
CAGAGTGTGCTAAGTATGGAACAGTGACTCGTGTGCTGATCTTTGAGATCACTGAACCGGATTTCCCAGTGGATGAAGCTGTTCGAATCTTTGTGCAGTTTGAGCGATCTGAGCAAACAACTAAGGCTTTGGTTGACCTTGATGGCCGTTTTTTTGCTGGCAGGGTAGTCCATGCAACCTTCTATGATGAAGAAAAGTTT
AACAGAAATGAGTTGGCACCTGCACCAGGAGAGATACCTGGCTACCCTCAGTTTGACAAATAGTGAATGGTTCAGTGAGCCCTTTGTACCTGCTTGCTAATTTTTAACAAAGCAAGGTTCTGAGTTTGGCTAATCTACTAAAGTTGAACTGTGATGCGACATGGAGAAGATTGTGATTAGAGCTATAGGTGACAGATGAC
GTCAAACCGAACTACAACTTTGAATGACGCAATTTTGCCAAATTCTGGAGTTTGGCAAAACCATTGTTTGGTGGCATCTTTGTATCTTTTGATAATATTGCTTTGGCATTAAACTTTTAATGTGCTCCCGGCGTCATCATTTCCATCTGTTTTTTTGTAATATGTGCTCATAGAAATGTAAAAAGCATTTGTTGTCTGCT
TACAAGCCAAGCTTTTGGGTTGAACTAAACATGCAGAAGTTGAGCTAGTAGGGTATCATACTAATGTTTTGAGCTATAATGGATTTATGTTAGCCAGTGGGCCTGTTTTTATTGCGTCTTAATTACATTTATCAAGATACACAGTGTATTTGTGTTACCAAGTCACAAAGTGTATTTTGTGTTGAGTTTTATTATTGTTT
TAGTTACATTTTCAC

>TRINITY_DN108045_c0_g1_i6 from sample A3 / Example unspliced isoform:

TTAAAACATACATCGAATCCGAAGGAAAAACGGGGAAAAAATAAAAGCACATCCTTGTCATGCTTTTACAGAAGACGGGCGCTCCGTCTGTGTGTGGAGTTGCAGAGGACGACGGCGAGGAGGAGGGGGAAGAAGAAAAAACACAGAAGATCAGAGGTTGAGCAGCGGAAACCGTCTTGCAAAGGATAAATACATTCATC
GGATCTTGAAATATGCTGGGCGGACTGTATGGGGACTTACCCCCGCCATCTTCTTCCTCATCTACGGTGGCGGAAGAAGAAAACAACAACAATTCAATGTGGTCGAGCAGTGCGAAGATGGCTCCTTCCGCTCTGCGGAAGCCCACCACACTGTTCGCATCCCCATCTATCTTGAGGAACCAGCAGCCCTCAAGCAGCAG
CAAGCCCAAAACTTCAACCTCCTCCCAGCCCCAGCCCCGAGTCACGTACAACGACGGAACTGTGAGCCCGCTGGAGGCCTCTGCCGAGATGAAGCCTCTTTCACCCCCCCTCTCCGTTCAGACGGCCTTGGTGGGCGTCACCTCCACGGTCGTAGAAGAGTACGACCCCAGCCGGCCCAACGACTACGAGGATTATCGAC
GCGAGCGGCGCCGCCGGGCTGTCGAGGCGGAGATGCGCAGGGAGCTGGAGCGGAGGCGCTTGGAGGAGGAGGAGCGGGAGCGGGAACTCGTGGCGATGCGGGAGAAGGAAGAAACCGCTTCCGCTGCGGAGAAGGACTCCGAGAACTCCCGCGTGGCCGCGCTGAATATAAGCGGGGAGGATGCCTGGAAGCGGAGGGCA
GCCATGGGGCGGGGCGATGGCGGCGGCGGTCAGGTGCAGCCCAGATCGCCTTCACCGCCGCCCAGCGGCGCAGATGTGGGTGGTTTTACTATTGGCAAGTCTGGGACCGTGGGACTGGGTGTCGGGGCCGGCGGACATATGACCGCCGCGCAGAGGATGATGGCCAGGATGGGGTGGAAGGAAGGCCAGGGTTTGGGCAA
ACAGGAGCAGGGGATCACCACGCCTCTTATGGCCAAGAAGACTGATAAGAGGGCAGGTGTTATTGTCAATGCCAGCGAGGCCAGGCCCGAAAAGAAGATTAAGAGCGCCAATATCACAGCTCCGCCCACCAAGGTTCTGCTCCTTAGAAATATGGTTGGTCCAGGAGAAGTGGATGATGAACTAGAAGATGAAGTTGCCT
CAGAGTGTGCTAAGTATGGAACAGTGACTCGTGTGCTGATCTTTGAGATCACTGAACCGGATTTCCCAGTGGATGAAGCTGTTCGAATCTTTGTGCAGTTTGAGCGATCTGAGCAAACAACTAAGGCTTTGGTTGACCTTGATGGCCGTTTTTTTGCTGGCAGGGTAGTCCATGCAACCTTCTATGATGAAGAAAAGTTT
AACAGAAATGAGTTGGCACCTGCACCAGGAGAGATACCTGGCTACCCTCAGTTTGACAAATAGTGAATGGTTCAGTGAGCCCTTTGTACCTGCTTGCTAATTTTTAACAAAGCAAGGTTCTGAGTTTGGCTAATCTACTAAAGTTGAgtaagtatcatactaatttttgagctatgatgttgatttattttaactactat
tcgacctgctcttataatgttgtatattttgtaatcctctgatgcgaacatggagaagACTGTGATGCGACATGGAGAAGATTGTGATTAGAGCTATAGGTGACAGATGACGTCAAACCGAACTACAACTTTGAATGACGCAATTTTGCCAAATTCTGGAGTTTGGCAAAACCATTGTTTGGTGGCATCTTTGTATCTTT
TGATAATATTGCTTTGGCATTAAACTTTTAATGTGCTCCCGGCGTCATCATTTCCATCTGTTTTTTTGTAATATGTGCTCATAGAAATGTAAAAAGCATTTGTTGTCTGCTTACAAGCCAAGCTTTTGGGTTGAACTAAACATGCAGAAGTTGAGCTAGTAGGGTATCATACTAATGTTTTGAGCTATAATGGATTTATG
TTAGCCAGTGGGCCTGTTTTTATTGCGTCTTAATTACATTTATCAAGATACACAGTGTATTTGTGTTACCAAGTCACAAAGTGTATTTTGTGTTGAGTTTTATTATTGTTTTAGTTACATTTTCAC