NA ----> NA
Intron 1 GTTGAAACTA ... CTGTCTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 25 | 13 | 2 |
| A2 | 21.21 | 13 | 5 | 2 |
| A3 | 25.33 | 28 | 15 | 4 |
| A4 | 26.92 | 19 | 8 | 6 |
| A5 | 15.79 | 8 | 3 | 0 |
| A6 | 25 | 6 | 3 | 1 |
| A7 | 17.17 | 41 | 9 | 8 |
| A8 | 17.12 | 46 | 10 | 9 |
| A9 | 10.42 | 43 | 3 | 7 |
| A10 | 21.74 | 27 | 9 | 6 |
>TRINITY_DN105611_c1_g1_i14 from sample A4 / Example spliced isoformGTCAAATTTGACTAGTAATTCGTCAAAGGGTCGAAGATCGAATTTAAATACTGGACAAATAAAAAAAATAAAAATCGAACTCGTGTTATTTCCCGGCGTCCCGCTCGATAAGATGCTTGAACTTCTGTATTCTTCCTCTCGTTTCGGACTTCTAATGTGAACAGATGTTCTTGAATGAAGAAAATCAGAGTTTCATATTA
AACAAATCCCATCATTGGACGAATTTAGATACCCAAAACTCAGAATGCAGCTTTCGGTATCGAGGATATACAGGCGTCTCCATATATGCCCGAGGCCCTAGTATAATCTCTTCTATGATGGCGTTTTTGGAATGCCTTGACCATTGCTTCTATGGCCTATTCCATCCGAACGTCTGAAACCTTTGAAAGTGGTCTGAAGT
CATTGTTCAAGGTGTCCAATACTTGCTGGGACGTTGAAATCATCTGATCTAGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCC
CAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGAATCAAGGGATCCTTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGT
CTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCGTGTATGCAATATTCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAG
AGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCAGCTAATGAAAACTGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTT
GTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATTCAAATGCTAAAGGTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATT
CTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCTGGCATAACAGCAAATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATAT
GATATTATAGATATTGAAAAGCAACTTCTTGATGGAGAACGCATGTCATTACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTAC
AATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACAGCAAAGGACCGGTGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAG
ATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGATCAGCTTGGAAGGGTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATT
TCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAGGATCGGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGC
ATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTTCTATTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGA
CCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTGTGGTTGTATTCAGCATCAGCCATCACACAGGGCACGAAGAAGGTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTG
CCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGT
ATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCC
CAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATAGAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACT
AACACACCAATCAAGGGAAATGACAAAGAAGATCTAAATAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCATTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGGTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTT
CCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAGAAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGGATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATT
GGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAATGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAGGTGTCATGTGGATCAGTAGCTCTAACACTCTCAAGGAAGCCAC
>TRINITY_DN105611_c1_g1_i3 from sample A4 / Example unspliced isoform:GTCAAATTTGACTAGTAATTCGTCAAAGGGTCGAAGATCGAATTTAAATACTGGACAAATAAAAAAAATAAAAATCGAACTCGTGTTATTTCCCGGCGTCCCGCTCGATAAGATGCTTGAACTTCTGTATTCTTCCTCTCGTTTCGGACTTCTAATGTGAACAGATGTTCTTGAATGAAGAAAATCAGAGTTTCATATTA
AACAAATCCCATCATTGGACGAATTTAGATACCCAAAACTCAGAATGCAGCTTTCGGTATCGAGGATATACAGGCGTCTCCATATATGCCCGAGGCCCTAGTATAATCTCTTCTATGATGGCGTTTTTGGAATGCCTTGACCATTGCTTCTATGGCCTATTCCATCCGAACGTCTGAAACCTTTGAAAGTGGTCTGAAGT
CATTGTTCAAGGTGTCCAATACTTGCTGGGACGTTGAAATCATCTGATCTAGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCC
CAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGAATCAAGGGATCCTTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGT
CTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCGTGTATGCAATATTCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAG
AGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCAGCTAATGAAAACTGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTT
GTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATTCAAATGCTAAAGGTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATT
CTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCTGGCATAACAGCAAATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATAT
GATATTATAGATATTGAAAAGCAACTTCTTGATGGAGAACGCATGTCATTACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTAC
AATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACAGCAAAGGACCGGTGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAG
ATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGATCAGCTTGGAAGGGTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATT
TCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAGGATCGGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGC
ATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTTCTATTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGA
CCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTGTGGTTGTATTCAGCATCAGCCATCACACAGGGCACGAAGAAGGTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTG
CCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGT
ATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATCTTCCACATACAACCAAGAAAAAGgttgaaactagttatcttcagtactgattacttctggaattgctttcttatagaacaactttaaagcttgtggcctgaactctttgtaaactgtctctagAGCCTTGTTAAAGCTCTAATCAAGGTTAAG
GTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATAGAAGATCATGATGAAAATAC
CAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAATAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCATTCCCAATTAAAGGAGCCAA
ATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGGTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAGAAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGGATGTGAATATTTGAAGAGGC
CTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAATGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAGGTGTCATGTGGATCAGTAGC
TCTAACACTCTCAAGGAAGCCAC
Intron 2 GTATGTAAAA ... TTACATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.83 | 38 | 8 | 12 |
| A2 | 24.44 | 17 | 5 | 6 |
| A3 | 22.67 | 58 | 18 | 16 |
| A4 | 23.33 | 23 | 12 | 2 |
| A5 | 22.22 | 14 | 5 | 3 |
| A6 | 12 | 11 | 1 | 2 |
| A7 | 20.93 | 51 | 13 | 14 |
| A8 | 23.21 | 43 | 12 | 14 |
| A9 | 19.05 | 51 | 12 | 12 |
| A10 | 21.9 | 41 | 12 | 11 |
>TRINITY_DN103502_c0_g2_i9 from sample A5 / Example spliced isoformCGCTCGATAAGATGCTTGAACTTCTGTATTCTTCCTCTCGTTTCGGACTTCTAATGTGAACAGATTTTCTTGAATGACGAAAATCAGAGTTTCATATTAAACAAATCCCATCATTGGACGAATTTAGATACCCAAAACTCAGAATGCAGCTTTCGGTATCGAGGATATACAGGCGTCTCCATATATGCCCGAGGCCCTAG
TATAATCTCTTCTATGATGGCGTTTTTGGAATGCCTTGACCATTGCTTCTATGGCCTATTCCATCCGAACGTCTGAAACCTTTGAAAGTGGTCTGAAGTCATTGTTCAAGGTGTCCAATACTTGCTGGGACGTTGAAATCATCTGATCTAGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTT
AGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGAATCAAGGGATCCTTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAA
AAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCGTGTATGCAATATTCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGAT
GCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCAGCTAATGAAAACTGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAA
TAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATTCAAATGCTAAAGGTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTT
CAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGACTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCTGGCATAACAGCAAATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATT
GATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGAACGCATGTCATTACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAG
TGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACAGCAAAGGACCGGTGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATG
TCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGATCAGCTTGGAAGGGTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTG
GATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAGGATCGGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTA
TTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTTCTATTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGAAC
CATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTGTGGTTGTATTCAGCATCAGCCATCACACAGGGCACGAAGAAGGTATATCTAAAAGAAAAATTT
CAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGA
TGGTCTACTGGTTATGGTAAATTCCAATGTGGAAGCAATATATTTAAATTTTATTCCATATTCATTTATTCCTTATTTATATTTATCCATTTCCACAGCTTGTACTCTGATGTCTTTATTGTGGATTTAATAGACTGACTGAACTCTCAAATTTAGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGA
GGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGAT
TATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATAGAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAA
TTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAATAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCATTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAA
TCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAGAAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGGATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTA
TCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAATGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAGGTGTC
>TRINITY_DN103502_c0_g2_i2 from sample A5 / Example unspliced isoform:AAATTATACTGTATGTAGAATATCAAAGGCACCAAGATTGCCAAGCGAATCCGTTGCCGTGGGTAGAATTGATTAAGTTCCGATCATCCCGTCAAAATTCCTTGGAGATTAGTCAAGCTTCTTTTGTTTCTTGTCCTTCTAACAAATATATACCCTATTAAAGGATAATATCCCCATGAAAGTGAATCTGAGGAGCCCAT
TATTCGATAAATGACCTCTTCATTAATTGACAAATCAAATATACGTCTTGATCTTTAACTTTTTCCCCTTGTTACAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAG
GATCGgtatgtaaaaaataaaaaattgcaagtcaagataggcaaactacaaattagaggtccacactagtatctgagtatgctttagttggcagtgttaatgggagctctttgtatcaaccctacatgtagtgtaaactgctttctaacctgttgacgtagcttttcttttacatgcagGTCTCATTGATTGATACAAAA
TCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTTCTATTGTGAAACCTAAGCAACCATC
TACTGCAATCTTTATGCATGTTTTAGGTTTGTTTTAAAAAGCAGAACCAGTTACAATATCTGC
Intron 3 GTTTGTTTTA ... TGAACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30 | 28 | 5 | 19 |
| A2 | 23.08 | 15 | 3 | 6 |
| A3 | 25.81 | 23 | 10 | 6 |
| A4 | 35.14 | 12 | 6 | 7 |
| A5 | 24.32 | 14 | 6 | 3 |
| A6 | 21.43 | 11 | 6 | 0 |
| A7 | 19.4 | 27 | 7 | 6 |
| A8 | 22.03 | 23 | 6 | 7 |
| A9 | 16.67 | 25 | 3 | 7 |
| A10 | 15.38 | 22 | 4 | 4 |
>TRINITY_DN119612_c0_g1_i5 from sample A1 / Example spliced isoformATCGAATTTAAATACTGGACAAATAATAAAAAAAAATCGAACTCGTGTTATTTCCCGGCGTCCCGCTCGATAAGATGCTTGAACTTCTGTATTCTTCCTCTCGTTTCGGACTTCTAATGTGAACAGATGTTCTTGAATGAAGAAAATCAGAGTTTCATATTAAACAAATCCCATCATTGGACGAATTTAGATACCCAAAA
CTCAGAATGCAGCTTTCGGTATCGAGGATATACAGGCGTCTCCATATATGCCCGAGGCCCTAGTATAATCTCTTCTATGATGGCGTTTTTGGAATGCCTTGACCATTGCTTCTATGGCCTATTCCATCCGAACGTCTGAAACCTTTGAAAGTGGTCTGAAGTCATTGTTCAAGGTGTCCAATACTTGCGGGGACGTTGAA
ATCATCTGATCTAGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGA
ATCAAGGGATCCTTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCG
TGTATGCAATATTCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCA
GCTAATGAAAACTGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATT
CAAATGCTAAAGGTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCT
GGCATAACAGCAAATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGA
ACGCATGTCATTACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACA
GCAAAGGACCGGTGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGAT
CAGCTTGGAAGGGTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATG
TGAAGAAGGATCGGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTT
TTAGTCCTTCTATTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTG
TGGTTGTATTCAGCATCAGCCATCACACAGGGCACGAAGAAGGTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAG
ATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAG
TTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCT
GATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATAGAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAA
TAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCATTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAG
AAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGGATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAA
TGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAGGTGTCA
>TRINITY_DN119612_c0_g1_i1 from sample A1 / Example unspliced isoform:AAACAGGCAGCAGCAGAATCGCGTCACCAGTTCGAAACTCCGGGAGAAAGATCAGAGACGAGTCAGTAGTTCGATTCTCCATTACATCCATCCAAAATACGAGGGAACTGAAAGCAGTTAAACATGTTCGTGAAGAAGCTCATCAGTAAATCCGGGAAAAAGTGTCCAATACTTGCTGGGACGTTGAAATCATCTGATCT
AGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGAATCAAGGGATCC
TTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCGTGTATGCAATAT
TCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCAGCTAATGAAAAC
TGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATTCAAATGCTAAAG
GTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCTGGCATAACAGCA
AATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGAACGCATGTCATT
ACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACAGCAAAGGACCGG
TGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGATCAGCTTGGAAGG
GTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAGGATC
GGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTTCTA
TTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGgtttgttttaaaaagcagaaccagttacaatatctaatttctttcaatatgttaagaaatacatgtgtattgttttcatttaatttcggttccttctagaagaaagcatggaactatataatacgcaaatctgacttgcatttactccagca
aaaggaagtgctggtgacttgactaaatgctttcatcaaattctaatgtcttgttatatgttaaatcaatctgacttttcctaatgtgataatgaactgcagAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGAT
GCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTGTGGTTGTATTCAGCATCAGCCATCACACAGGTCCATGATAAGAATATGTTGAGAGTAGTGCCATACCCATTTTTAAAATAGAGCTCTAATTTTTCCTCTACATTTCAAATGTTTCATGAACTAATGTGGACATGAAATAATTACAGGGCACGAAGAAG
GTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAA
CTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTA
AAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATA
GAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAATAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCA
TTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAGAAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGG
ATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAATGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAG
GTGTCA
Intron 4 GTATGATGAT ... TTTGTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4 | 24 | 1 | 0 |
| A2 | 36 | 16 | 9 | 1 |
| A3 | 9.09 | 20 | 2 | 0 |
| A4 | 22.22 | 7 | 2 | 0 |
| A5 | 14.29 | 6 | 1 | 0 |
| A6 | 0 | 7 | 0 | 0 |
| A7 | 17.65 | 42 | 9 | 0 |
| A8 | 13.68 | 82 | 13 | 0 |
| A9 | 13.64 | 38 | 6 | 0 |
| A10 | 11.43 | 31 | 4 | 0 |
>TRINITY_DN114925_c0_g1_i1 from sample A2 / Example spliced isoformAAAAAATCGAACTCGTGTTATTTCCCGGCGTCCCGCTCGATAAGATGCTTGAACTTCTGTATTCTTCCTCTCGTTTCGGACTTCTAATGTGAACAGATGTTCTTGAATGAAGAAAATCAGAGTTTCATATTAAACAAATCCCATCATTGGACGAATTTAGATACCCAAAACTCAGAATGCAGCTTTCGGTATCGAGGATA
TACAGGCGTCTCCATATATGCCCGAGGCCCTAGTATAATCTCTTCTATGATGGCGTTTTTGGAATGCCTTGACCATTGCTTCTATGGCCTATTCCATCCGAACGTCTGAAACCTTTGAAAGTGGTCTGAAGTCATTGTTCAAGGTGTCCAATACTTGCTGGGACGTTGAAATCATCTGATCTAGATCCATCCCTGGCTGG
ACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGAATCAAGGGATCCTTCTAAATTTAACATCTC
GAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCGTGTATGCAATATTCTATTCCTATATCCATT
ACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCAGCTAATGAAAACTGTCACAGTAGGAAATCA
AAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATTCAAATGCTAAAGGTTTGGAATCCCGCGATT
CTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCTGGCATAACAGCAAATCAAAACAATCTATGT
GAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGAACGCATGTCATTACTATCTGAGTCAAGGGC
CTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACAGCAAAGGACCGGTGACAATCAGAAGTGTGT
ATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGATCAGCTTGGAAGGGTTCAAATCTACAAAATC
ATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAGGATCGGTCTCATTGATTGATAC
AAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTTCTATTGTGAAACCTAAGCAAC
CATCTACTGCAATCTTTATGCATGTTTTAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTGTGGTTGTATTCAGCATCAGCCATCACACAG
GGCACGAAGAAGGTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGTTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATTATGTGATTTGAAACCAAGCAC
GGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATCTTCCACATACAACCAAGAAAA
AGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCTACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGATGACAAAGAGCTGGATATTGAT
GACCTTGATATAGAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAATAGAATTCGAACAATTGAAGACATAAAATC
TGCTTATGGTCATTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAGAAAAGAAAGGATGAAAAGGTTTGGGTACAA
GGAAATTGAAGGATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAATGATGTAAATTGTATGACATATTTTTCATG
AGTAGAATTAAGGTGTCATGTGGATCAGTAGCTCTAACACTCTCAAGGAAGCCACTGCTTTAATGTTCTCTTTGTAATAATTATATAAATATAATTTAATATGGAAGTTTTTCTATGTAGTTACCCTGCC
>TRINITY_DN114925_c0_g1_i23 from sample A2 / Example unspliced isoform:AAGAAACAGGCAGCAGCAGAATCGCGTCACCAGTTCGAAACTCCGGGAGAAAGATCAGAGACGAGTCAGTAGTTCGATTCTCCATTACATCCATCCAAAATACGAGGGAACTGAAAGCAGTTAAACATGTTCGTGAAGAAGCTCATCAGTAAATCCGGGAAAAAGTGTCCAATACTTGCTGGGACGTTGAAATCATCTGA
TCTAGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGAATCAAGGGA
TCCTTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCGTGTATGCAA
TATTCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCAGCTAATGAA
AACTGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATTCAAATGCTA
AAGGTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCTGGCATAACA
GCAAATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGAACGCATGTC
ATTACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACAGCAAAGGAC
CGGTGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGATCAGCTTGGA
AGGGTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAGG
ATCGGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTT
CTATTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTGTGGTTGTAT
TCAGCATCAGCCATCACACAGGGCACGAAGAAGGTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGTTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATT
ATGTGATTTGAAACCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATC
TTCCACATACAACCAAGAAAAAGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCTACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGAT
GACAAAGAGCTGGATATTGgtatgatgattgtctttatattaactaaattgaatttggattatcaagacactaaacttgccttgactcatatattgtatttgtgttttgttatagATGACCTTGATATAGAAG
Intron 5 GTAAATTCCA ... TCAAATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.08 | 22.3 | 8 | 15 |
| A2 | 27.59 | 21 | 10 | 6 |
| A3 | 28.3 | 19 | 2 | 13 |
| A4 | 27.78 | 13 | 4 | 6 |
| A5 | 37.5 | 10 | 7 | 5 |
| A6 | 20 | 6 | 0 | 3 |
| A7 | 19.27 | 44 | 11 | 10 |
| A8 | 19.38 | 52 | 5 | 20 |
| A9 | 27.03 | 27 | 6 | 14 |
| A10 | 22.86 | 54 | 19 | 13 |
>TRINITY_DN119612_c0_g1_i5 from sample A1 / Example spliced isoformATCGAATTTAAATACTGGACAAATAATAAAAAAAAATCGAACTCGTGTTATTTCCCGGCGTCCCGCTCGATAAGATGCTTGAACTTCTGTATTCTTCCTCTCGTTTCGGACTTCTAATGTGAACAGATGTTCTTGAATGAAGAAAATCAGAGTTTCATATTAAACAAATCCCATCATTGGACGAATTTAGATACCCAAAA
CTCAGAATGCAGCTTTCGGTATCGAGGATATACAGGCGTCTCCATATATGCCCGAGGCCCTAGTATAATCTCTTCTATGATGGCGTTTTTGGAATGCCTTGACCATTGCTTCTATGGCCTATTCCATCCGAACGTCTGAAACCTTTGAAAGTGGTCTGAAGTCATTGTTCAAGGTGTCCAATACTTGCGGGGACGTTGAA
ATCATCTGATCTAGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGA
ATCAAGGGATCCTTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCG
TGTATGCAATATTCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCA
GCTAATGAAAACTGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATT
CAAATGCTAAAGGTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCT
GGCATAACAGCAAATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGA
ACGCATGTCATTACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACA
GCAAAGGACCGGTGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGAT
CAGCTTGGAAGGGTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATG
TGAAGAAGGATCGGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTT
TTAGTCCTTCTATTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTG
TGGTTGTATTCAGCATCAGCCATCACACAGGGCACGAAGAAGGTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAG
ATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAG
TTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCT
GATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATAGAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAA
TAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCATTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAG
AAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGGATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAA
TGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAGGTGTCA
>TRINITY_DN119612_c0_g1_i2 from sample A1 / Example unspliced isoform:CTAAAATCAACTTTCATTGTTTAACTGATGTTTATGTTTGTAGTTAAATTAATTTTTTTTTCAGAATTTTTCTAGACACTGCTACTGTGGTCTGAACAAATCTTATAAGCATTTCTTCTCTTATGACTTTCAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATTATGTGATTTGAAA
CCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGgtaaattccaatgtggaagcaatatatttaaattttattccatattcatttattccttatttatatttatccatttccacagcttgtactctgatgtctttattgtggatttaatagactgactgaactctcaaatttagATT
GATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTC
ATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATAGAAGATCATGATGAAAATACCAATTACCACCATAGTGGGG
CCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAATAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCATTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAG
GAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAGAAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGGATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGAT
CGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAATGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAGGTGTCA
Intron 6 GTCCATGATA ... ATAATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 36 | 13 | 17 |
| A2 | 14.81 | 23 | 4 | 4 |
| A3 | 17.02 | 39 | 7 | 9 |
| A4 | 31.58 | 13 | 6 | 6 |
| A5 | 33.33 | 4 | 2 | 2 |
| A6 | 14.29 | 3 | 0 | 1 |
| A7 | 15.79 | 32 | 4 | 8 |
| A8 | 24.64 | 26 | 5 | 12 |
| A9 | 17.53 | 40 | 9 | 8 |
| A10 | 18.75 | 39 | 10 | 8 |
>TRINITY_DN119612_c0_g1_i5 from sample A1 / Example spliced isoformATCGAATTTAAATACTGGACAAATAATAAAAAAAAATCGAACTCGTGTTATTTCCCGGCGTCCCGCTCGATAAGATGCTTGAACTTCTGTATTCTTCCTCTCGTTTCGGACTTCTAATGTGAACAGATGTTCTTGAATGAAGAAAATCAGAGTTTCATATTAAACAAATCCCATCATTGGACGAATTTAGATACCCAAAA
CTCAGAATGCAGCTTTCGGTATCGAGGATATACAGGCGTCTCCATATATGCCCGAGGCCCTAGTATAATCTCTTCTATGATGGCGTTTTTGGAATGCCTTGACCATTGCTTCTATGGCCTATTCCATCCGAACGTCTGAAACCTTTGAAAGTGGTCTGAAGTCATTGTTCAAGGTGTCCAATACTTGCGGGGACGTTGAA
ATCATCTGATCTAGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGA
ATCAAGGGATCCTTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCG
TGTATGCAATATTCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCA
GCTAATGAAAACTGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATT
CAAATGCTAAAGGTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCT
GGCATAACAGCAAATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGA
ACGCATGTCATTACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACA
GCAAAGGACCGGTGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGAT
CAGCTTGGAAGGGTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATG
TGAAGAAGGATCGGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTT
TTAGTCCTTCTATTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGATGCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTG
TGGTTGTATTCAGCATCAGCCATCACACAGGGCACGAAGAAGGTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAG
ATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAACTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAG
TTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTAAAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCT
GATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATAGAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAA
TAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCATTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAG
AAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGGATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAA
TGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAGGTGTCA
>TRINITY_DN119612_c0_g1_i1 from sample A1 / Example unspliced isoform:AAACAGGCAGCAGCAGAATCGCGTCACCAGTTCGAAACTCCGGGAGAAAGATCAGAGACGAGTCAGTAGTTCGATTCTCCATTACATCCATCCAAAATACGAGGGAACTGAAAGCAGTTAAACATGTTCGTGAAGAAGCTCATCAGTAAATCCGGGAAAAAGTGTCCAATACTTGCTGGGACGTTGAAATCATCTGATCT
AGATCCATCCCTGGCTGGACATTATGGGGTCCCAACAACATCAACCACCTTAGCTTTTGATTCAATTCAGTGCATTCTTGCTATCGCTTCACGGGACGGACGAATCAAGTTATTTGGTGCCGATGAGGCTCAAGTATTATTACAGTCTCCCAACCCAACTTCTTGCAAATTTTTGCAGTTTCTGGAGAATCAAGGGATCC
TTCTAAATTTAACATCTCGAAATGACATTGAGGTGTGGGATGTCGACAAAAAAGAGTTGGCTCATGTATATTCTTGCAAGGAAATTACTGCATTTACAGTCTTACAGGGAAGTCCTTTCATGTATATAGGAGATGCGAAAGGAAATGTGTCTGTTTTACAATTTGATCGAGAGTTGAAACATATTTCGTGTATGCAATAT
TCTATTCCTATATCCATTACTCATGGGGTTGTTGCTGAAGTGAGTAGGGATGCTTCTGTTGTTTGTATCTTGCCTCAACCACTTTATGAATTTAGTAGGGTTCTTGTCATTTTTAAGAATGGTTTACTTATACTGTGGGGAATTCAGGAGAGCCAGGTTCTTGCAGTCTGTGGCAATGTGGAGACTCAGCTAATGAAAAC
TGTCACAGTAGGAAATCAAAGAGAATCAAAAACCTCGGATCCCCTTCAAAATAGAGTTAATGAAGAAGGTAAACAAATATCTTCTGCATGTTGGGCATGCTCTGATGGGAGTAGGATAGCCATTGGTTACACTGATGGAGATATCTGGTTGTGGAATGTGCCCACAATGTCAAAATTGAAGTACAATTCAAATGCTAAAG
GTTTGGAATCCCGCGATTCTCAATATTCACCAATCTCTAAAGTGCAACTTTCAAATAGGAAGGCCAAAGTGCCCATATTTTCACTCAAATGGCATCGTGGCAGTGACAACTGGGGTTGTCTTTATGTTTATGGAGGTGTTGATTTTGATTCTTCACATGTGATTCGGGTTATTCGTCTCCAAGAGTCTGGCATAACAGCA
AATCAAAACAATCTATGTGAATTGGAGCTTGTCCTTCCGGGCCCTTACATTGATATGTCAATACTCTCAACTTCAAGTAAACATTCAAAAAGCAAGGTTGGAGGAGAATGCCTCATGGTTCTAACAAAAACGGGCCAGTTGTCTACATATGATATTATAGATATTGAAAAGCAACTTCTTGATGGAGAACGCATGTCATT
ACTATCTGAGTCAAGGGCCTTTATGGTAAAGCCACCTTTTGCAGATTCAAGTGTAACGGCAGCAAAGCTTGTTACAATGCCTAATGATATTGCGTCTTCTAATGCTTTAGCGCAGCTTCATAGGTCATCAAAGCAACTTTTTCCTTCTACAATCAAATGGCCTGCGATAGAGAAAATTTTTATAGACAGCAAAGGACCGG
TGACAATCAGAAGTGTGTATATAACAGGGCATAGTAATGGAACAATCAATGTCTGGGATGCATCATCTCCACACATGCTTTTAGTGCTGACCATAAAAGCTCAGAGTGATGTAGAGGCCACTGTGAAGGGTTGTCCTATTACAGCTGTAGATTTCTGTCCAGTGTCTTGTTTACTTGCTATTGGTGATCAGCTTGGAAGG
GTTCAAATCTACAAAATCATCCCCAAGCATCAGGATGTCAAGATCATGCTGGATAAGGGTTCAACTCATCAAGAAAAGCCCCTGGAATCTACTGCTGACGTTCTGAAGGTTGGGATACTCAAAGTTCATAAGGCAGCGATTCGTTGCATTTCCGTTGACGCATCTTCGACGCACGTTGCTGCTGGATGTGAAGAAGGATC
GGTCTCATTGATTGATACAAAATCATGCACTCTTTTATCCTTTAAAAGTTATTTCTCTGGATTTTCTTCAAGCGTCACCTCTCTGCGGTTCGGAAAATCCGTGTTCCCTGGTTCAGGGAAATCTGTATTATTTGTAGCAGCAAGAGATGCATCTGTAGTAGCTATCGATGGAGATACAGGACACTGTTTTAGTCCTTCTA
TTGTGAAACCTAAGCAACCATCTACTGCAATCTTTATGCATGTTTTAGGTTTGTTTTAAAAAGCAGAACCAGTTACAATATCTAATTTCTTTCAATATGTTAAGAAATACATGTGTATTGTTTTCATTTAATTTCGGTTCCTTCTAGAAGAAAGCATGGAACTATATAATACGCAAATCTGACTTGCATTTACTCCAGCA
AAAGGAAGTGCTGGTGACTTGACTAAATGCTTTCATCAAATTCTAATGTCTTGTTATATGTTAAATCAATCTGACTTTTCCTAATGTGATAATGAACTGCAGAACCATCTATAGAAACCATAGTGGGAAATAGTGACGAGAAATCGCTCTTGCCTAAACAGTTAAATGGTCATGAAGAAAATAATACCTCACGCACAGAT
GCGACCCAGCCTTTGTTGTTACTCTGCTCAGAAAATTGTTTGTGGTTGTATTCAGCATCAGCCATCACACAGgtccatgataagaatatgttgagagtagtgccatacccatttttaaaatagagctctaatttttcctctacatttcaaatgtttcatgaactaatgtggacatgaaataattacagGGCACGAAGAAG
GTATATCTAAAAGAAAAATTTCAAACTACTTGCAGCTGGGCTTCAGCTTTTCAAAGCTCTAACAATAGTCCTGGTCTTTTTCTCCTATTCACAACTGGTAAAATTGAAATAAGATCCTTGCCCGACCTATCTGTTTTGAAAGAAACTACACTAAGCAGATGTTCATTATGTGATTTGAAACCAAGCACGGGTCTTATCAA
CTCACTTTCATGTGCTTCGGATGGTCTACTGGTTATGATTGATGGAGATCAAGAGCTGTTTTTTGTTTCCCTTCTCAACGAGGACAATGATTTCAGGTTATCTGGATCCAAGATCCAAGTATATAATAAAGAGATTCAAATTTCTCCTGATCACCCAGTTGTGCATCTTCCACATACAACCAAGAAAAAGAGCCTTGTTA
AAGCTCTAATCAAGGTTAAGGTCAGTAAGTCAAAGAATTCATCAGAGGATGAAGACAAACAATCTGCAACACCTCTTAGATTATCAGAACTGTCTAGTATATTTTCAGTCCGCAATTTCCCAACATCGGCTGCGAGTTTGGACGAAAAGGCAATCTCTGATATAGATGACAAAGAGCTGGATATTGATGACCTTGATATA
GAAGATCATGATGAAAATACCAATTACCACCATAGTGGGGCCTCAAACAACCGCAGCTTGGTCAGCAAATTTCGGAGAAAATTAAAAGGCATAAAAGGATCAAAAGATATCCAGTCCACTAACACACCAATCAAGGGAAATGACAAAGAAGATCTAAATAGAATTCGAACAATTGAAGACATAAAATCTGCTTATGGTCA
TTCCCAATTAAAGGAGCCAAATGTTCATGAACTAGCAAAGGAAAAGCTTTTGGAAAACCAGATAAAACTGCAGGCTATTAATCATCGTACAGCAAAAATGGAAGAAGGTGCTGAAAACTTCCAATCAATGGCGGAGGAGTTGTTGAAGATAGTGAAAGAAAAGAAAGGATGAAAAGGTTTGGGTACAAGGAAATTGAAGG
ATGTGAATATTTGAAGAGGCCTTCTTTGAATGAGATAGATCGCAAACTAATTAACGAAATGTATTTTCTTACCTTCTTCTATCTTTCTTTGTGTTGGGCTACATTGCAGTTCAGGTTATTGGACTTGAGAGCATCTTTTACTATTAAGCATCGATCAATGATGTAAATTGTATGACATATTTTTCATGAGTAGAATTAAG
GTGTCA