sp|P10978|POLX_TOBAC ----> Retrovirus-related Pol polyprotein from transposon TNT 1-94

Intron 1 GTAACCACAT ... ACTTGCCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60	3	6	3
A2	81.82	1	4	5
A3	50	5	2	8
A4	50	2	2	2
A5	100	0	4	4
A6	47.83	24	23	21
A7	44	7	6	5
A8	23.08	10	5	1
A9	57.14	12	16	16
A10	48.57	9	12	5

>TRINITY_DN42599_c0_g1_i2 from sample A6 / Example spliced isoform

AATAGTCCAAAATGGGCAAAACACGCGTTTCAACGATTTTCTTCCTGCAAATGTTTAAATTCTACTAAATGGATGGAGGATTTCAACTCCGAGTGTAAAGTTGTTGGCTACATTTGTGGAAGCTTCAAATCACATAAAATTCTAGGAAATCACTCCACTACCAAGGGTAAAAGCACAACATGTAGTAGATTTTCTTTCAT
TTGTATCACTTGCCCAGTTTGCATTTGAAAATCCTTTCAACATGAAGTTATCTTTTTTTTAAGTACAATACCAAATTGTGAGGTACCTTTGATTTGATATACTTAAGTACTCTCTTTGTTGCATTCTAATGTGTCTCCTTGGGACAATTTAAAAACCTTGATATCATTTCAACTGCAAAAGTTATGTCTGTAGTTGTGTA
AGATATATCAGTCCTCCTACAAGTTGACGATAAAGCTATACATTAACCACCTTAGATTTATCATCTTTTGAAAGCTTTAAGTTTAT

>TRINITY_DN42599_c0_g1_i1 from sample A6 / Example unspliced isoform:

AATAGTCCAAAATGGGCAAAACACGCGTTTCAACGATTTTCTTCCTGCAAATGTTTAAATTCTACTAAATGGATGGAGGATTTCAACTCCGAGTGTAAAGTTGTTGGCTACATTTGTGGAAGCTTCAAATCACATAAAATTCTAGgtaaccacattgcttcacatgttgttgcaattgttgcgttgtactttgcttctat
tcttgaaagagctaccaaaggtttctttttacttgcccagGAAATCACTCCACTACCAAGGGTAAAAGCACAACATGTAGTAGATTTTCTTTCATTTGTATCACTTGCCCAGTTTGCATTTGAAAATCCTTTCAACATGAAGTTATCTTTTTTTTAAGTACAATACCAAATTGTGAGGTACCTTTGATTTGATATACTTA
AGTACTCTCTTTGTTGCATTCTAATGTGTCTCCTTGGGACAATTTAAAAACCTTGATATCATTTCAACTGCAAAAGTTATGTCTGTAGTTGTGTAAGATATATCAGTCCTCCTACAAGTTGACGATAAAGCTATACATTAACCACCTTAGATTTATCATCTTTTGAAAGCTTTAAGTTTAT