NA ----> NA
Intron 1 GTAATGTGTT ... TATAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.62 | 52.7 | 34.6 | 11.4 |
| A2 | 38.61 | 35 | 22 | 8.6 |
| A3 | 32.37 | 37.7 | 18 | 8.4 |
| A4 | 27.78 | 31.3 | 12 | 4.3 |
| A5 | 30.07 | 34.9 | 15 | 4.7 |
| A6 | 17.26 | 140.7 | 29.2 | 13.8 |
| A7 | 17.54 | 299 | 63.2 | 22.3 |
| A8 | 18.58 | 386.2 | 87.7 | 26.8 |
| A9 | 19.71 | 262.8 | 64 | 20 |
| A10 | 18.7 | 322.3 | 74 | 9.3 |
>TRINITY_DN120049_c1_g2_i16 from sample A1 / Example spliced isoformGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGGGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAG
AGCCAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCGGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCC
AGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAG
AGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCG
ATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAGTTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTTTTTGAGTTTTTATTTTTATTTTTACCTGTGATTC
TATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACAATGATGGAGTGATACAATGATATAAGGGATTCTGATGATACAAGGTATTCTATGTT
TTCTGGACGTCATTGAGAGCGCAACGGCCACAAGAGTCCAAGTTACAAGACAAGATACCATATATACAGCTGGAATTCACATGGCCCTCGAAGATTACATGTAAGTTTTTGTTGGTGTGAACACAAATCCACATAATGTTCAGATTTACTATTCTTTTAATGATCTTGAGTGTATGATTTCCACATAATGTTCAGATTTA
CTATTCTTTTAATGATCTTGAGTGTATGATTTAGCCATGAAAGGTTTGGTTTGGTTTTGAAGGTTTGGTTTGGTTTTGCATTTTGGATTTGCCTTAGGGTTTTTGTAATTTAAGTTGAGATTTACATTCTGGATTTGTGCAATTTTTTTTTCACTGAATTCATTAGATTTCATCAGACTTAATATTTTCAGATTTAATCA
TTCAGATAAATGTTTGATTTCTGTTATTTTAGTTTTTTTTATTTTTCAATTTTATTGTAAATTATTTTTGCTTTTATAGTTTTAATGATGGGTTTTTAAAATCCACATAATGTTCAGATTTGCTCATCTTTTAATGATCTTGAGTGCTGGATTTAGCCATGAAAGGTTTGATTCCGTTTTGCATTTTGGATCTGTCTTAG
GGTTTTTGTAATTTAGGCTGAGATTTACATTCTGGATTTGTGCAATTTTTTTTTAATTGAATTCATAAGATTTCAAAAGGCTAAATAATTTCAGATTTAATCATTTTGATAAATGTTTGATTTCTGTTATTTTAGTTTTTTTTATTTTTCAATTTTATTG
>TRINITY_DN120049_c1_g2_i3 from sample A1 / Example unspliced isoform:GAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGGGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAG
AGCCAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCGGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCC
AGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAG
AGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCG
ATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAGTTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTTTTTGAGTTTTTATTTTTATTTTTACCTGTGATTC
TATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACAATGATGGAGTGATACAATGATATAAGGGATTCTGATGATACAAGGTATTCTATGTT
TTCTGGACGTCATTGAGAGCGCAACGGCCACAAGgtaatgtgttttgatgatacaaggtattctatgttattttgtatatttctattgttttgtgtggctgatatttttggtttatgttatagtgcagAGTCCAAGTTACAAGACAAGATACCATATATACAGCTGGAATTCACATGGCCCTCGAAGATTACATGTAAGT
TTTTGTTGGTGTGAACACAAATCCACATAATGTTCAGATTTACTATTCTTTTAATGATCTTGAGTGTATGATTTCCACATAATGTTCAGATTTACTATTCTTTTAATGATCTTGAGTGTATGATTTAGCCATGAAAGGTTTGGTTTGGTTTTG
Intron 2 GCTGAGGCGT ... GAAGAGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.9 | 66.5 | 68.5 | 53.5 |
| A2 | 48.19 | 64.5 | 60 | 59.5 |
| A3 | 45.32 | 89 | 85.5 | 59.5 |
| A4 | 48.8 | 61 | 75 | 40 |
| A5 | 48.72 | 22.5 | 22.5 | 20 |
| A6 | 49.34 | 55 | 55.5 | 49.5 |
| A7 | 47.1 | 167.5 | 160.5 | 137.5 |
| A8 | 53.13 | 103 | 130 | 99.5 |
| A9 | 51.42 | 85 | 95.5 | 84 |
| A10 | 47.48 | 133.5 | 131.5 | 110 |
>TRINITY_DN43266_c1_g2_i12 from sample A6 / Example spliced isoformGTGCGCTTAGGGTTGTGTGACAGCCTGTAAGTGGATCCCAAATCTTTATAACCGGATTTCAAACACTTTATGCGACTTCGTATAACCTGTGATAGCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAG
CTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGC
CGAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATG
CAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAA
TAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAGCCACGCCGAGGAGAGTTTGGGAGTTCTATGAATGTCTCTCTGTTTACATTTTCTTTGTTTTGTCTTAAATTTAAACTGAAGCATGGCCATGCTCTTTTTTTAGTT
TTTTTTTTGTATTTTTGTTTTACCTGTGATTCTGTCTTCTCTTTCATTTTTTTTTTCATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACAATGATGGAGTGATACAATGATATAAGGGATTCTGATGATACAAGGGATTCTATGTTTTC
TGGACGTCATTGAGAGCGCAACGGCCACAAGAGTCCGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTAAGTTACAAGACAAGATACCATATATACAGCTGGAATTCACATGGCCCTCGAAGATTACATGCAATGAAGTGTCAATGACGTGGCAGATGTTTTGAC
ATAGTAGCACATCAAAAGAAAGATCGAGATTTCTTCGTCAAGCAATCTTTGAAGAAGCATATGTAACATCAATCTGATTTTCTGTGAAAAAAACATCAATCTGATTTCCTCTCAAATACTTGCATGGATTAATGAGAATTCAATCTATTTTTTTAATTGTAAATAATATTATTTTTTTATATGTAACACTAGACTGGTAT
ATTAATAAAATTATTTTTCTTTGTTTTGAGATTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCA
>TRINITY_DN43266_c1_g2_i6 from sample A6 / Example unspliced isoform:GTGCGCTTAGGGTTGTGTGACAGCCTGTAAGTGGATCCCAAATCTTTATAACCGGATTTCAAACACTTTATGCGACTTCGTATAACCTGTGATAGCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAG
CTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGC
CGAGGCCGAGCAAAGAAGAGCCAGgctgaggcgtttaggccaggcccagcaaagaagagccgggccgagcaaagaagagccagGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCAT
GTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGA
ACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAGCCACGCCGAGGAGAGTTTGGGAGTTCTATGAATGTCTCTCTGTTTA
CATTTTCTTTGTTTTGTCTTAAATTTAAACTGAAGCATGGCCATGCTCTTTTTTTAGTTTTTTTTTTGTATTTTTGTTTTACCTGTGATTCTGTCTTCTCTTTCATTTTTTTTTTCATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACA
ATGATGGAGTGATACAATGATATAAGGGATTCTGATGATACAAGGGATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGAGTCCGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTAAGTTACAAGACAAGATACCATATATACAGCTGGAATT
CACATGGCCCTCGAAGATTACATGCAATGAAGTGTCAATGACGTGGCAGATGTTTTGACATAGTAGCACATCAAAAGAAAGATCGAGATTTCTTCGTCAAGCAATCTTTGAAGAAGCATATGTAACATCAATCTGATTTTCTGTGAAAAAAACATCAATCTGATTTCCTCTCAAATACTTGCATGGATTAATGAGAATTC
AATCTATTTTTTTAATTGTAAATAATATTATTTTTTTATATGTAACACTAGACTGGTATATTAATAAAATTATTTTTCTTTGTTTTGAGATTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCA
Intron 3 GTGTACAAGA ... GATTATCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.51 | 12 | 39 | 35 |
| A2 | 80.77 | 5 | 23 | 19 |
| A3 | 77.22 | 9 | 33 | 28 |
| A4 | 76.81 | 8 | 25 | 28 |
| A5 | 71.43 | 3 | 6 | 9 |
| A6 | 82.25 | 15 | 61 | 78 |
| A7 | 76.33 | 67 | 201 | 231 |
| A8 | 79.45 | 49 | 175 | 204 |
| A9 | 75.08 | 37 | 95 | 128 |
| A10 | 79.87 | 47 | 175 | 198 |
>TRINITY_DN42815_c1_g1_i6 from sample A9 / Example spliced isoformGCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAG
GCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCGGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGCCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGC
CAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGC
CATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAAGCCTTGTTGC
TCAGAGCAGAGAAGAGGCATCTAGGCCAGAGCCATGCCCATCAGAGAAGAGGCATTTAGGCCAGAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAGTTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTTTTTGA
GTTTTTATTTTTATTTTTACCTGTGATTCTATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATCGAGGGGTGGAGTAATAAAATGATGGTGTGAAGAATAGCAGATGAT
ATAAGGGATTCTATGTTTTCTGGACATCATTGAAAGCGCAACAGCCACAAGGGCAGAGGCAAAGTTACAAGACAAGATACCATATATGCAGCTGCAATTCAGCTCACCCTTCAAATTTCATTCAAGATTACATGCACTGGAGTGGCAATGAAGTGGTGGATGTTTTGACAAACATGATGGCATATCAAAAGAAAGATAGA
TATTTCTTTTTCATGCAATGTTTGAAGAAGCTGGAGAATACTTGCATGGATTAATGAAAATTCATTCTCATTTGTTTAATTGTAAATAATATTTTTTTTATGTAACACTAGACTGGTATATCAATAAAATTATTTTTTATTTTTTGAGAAAGGGCTTGCCCTTTCTCAAATCTCTCGAGGATAGCTATGGCCAAAGCTAT
CCTTGAGAAGTCTCTCTTCTTATTGTC
>TRINITY_DN42815_c1_g1_i19 from sample A9 / Example unspliced isoform:GCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAG
GCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGG
CCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAG
AGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAAGCCTTGTTGCTCAGAGCAGAGAAGAGGCATCTAGGCCAGAGCCATGCCCATCAGAGAAGAGGCATTTAGGCCAGAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAG
TTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTTTTTGAGTTTTTATTTTTATTTTTACCTGTGATTCTATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGG
GCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATCGAGGGGTGGAGTAATAAAATGATGGTGTGAAGAATAGCAGATGATATAAGGGATTCTATGTTTTCTGGACATCATTGAAAGCGCAACAGCCACAAGGGCAGAGGCAAAGTTACAAGACAAGATACCATATATGCAGCTGCAATTCAGCTCACCCTTCAAATTTC
ATTCAAGATTACATgtgtacaagaaaacatggttatgccatgaacttagttgttgttttgttgatgtgcttgtcaaataaagattatcaagGCACTGGAGTGGCAATGAAGTGGTGGATGTTTTGACAAACATGATGGCATATCAAAAGAAAGATAGATATTTCTTTTTCATGCAATGTTTGAAGAAGCTGGAGAATACT
TGCATGGATTAATGAAAATTCATTCTCATTTGTTTAATTGTAAATAATATTTTTTTTATGTAACACTAGACTGGTATATCAATAAAATTATTTTTTATTTTTTGAGAAAGGGCTTGCCCTTTCTCAAATCTCTCGAGGATAGCTATGGCCAAAGCTATCCTTGAGAAGTCTCTCTTCTTATTGTC
Intron 4 GTATGATTTG ... TGCCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.82 | 7 | 10 | 9 |
| A2 | 34.62 | 17 | 9 | 3 |
| A3 | 47.06 | 9 | 8 | 1 |
| A4 | 80 | 1 | 4 | 0 |
| A5 | 66.67 | 1 | 2 | 0 |
| A6 | 50 | 25 | 25 | 3 |
| A7 | 41.91 | 79 | 57 | 5 |
| A8 | 56.85 | 104 | 137 | 15 |
| A9 | 66.4 | 42 | 83 | 3 |
| A10 | 69.29 | 43 | 97 | 1 |
>TRINITY_DN46518_c1_g3_i5 from sample A7 / Example spliced isoformAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAA
GAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGA
GCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGC
ATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCCACGCCGAGGAGAGTTTGGGAGTTCTATGAATGTCTCTCTGTTTACATTTTCTTTGTTTTGTCTTAAATTTAAACTGAA
GCATGGCCATGCTCTTTTTTTAGTTTTTTTTTTGTATTTTTGTTTTACCTGTGATTCTGTCTTCTCTTTCATTTTTTTTTTCATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACAATGATGGAGTGATACAATGATATAAGGGATTCTG
ATGATACAAGGTATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGAGGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTTTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCACGAAGGAACTTGTTATGTTTAAGGCAATGAAGTGGC
AGATGTTTTGACAGACATAGTGGCACATCAAAAGAAAGATGGAGATTTCTTTAAAGTAATGTTTGAAGAAGCAGATGGAGAATACTTGCATGGTCTAATGAGAATTCAATCTCATTTTTCTTAATTGTAAATCATATAATTTCTTTCTATGTAACACTAGACTAGTATATCAATAAAATTATCTTTTTACTTTATTGAGA
AAGGGCAAGCCCTTTCTCAAATCTCTCAAAGATAGCCATGGCCAAAGCTATCTTTGAGAAGTCTCCCTTCTTAGTGTTTGATTTATTTTATGCTTAGCTCTCACTTTATTAATTTTTAATTTAAGGTATGTTATACTTTGTGAATTTGCAGCAAACTTTTATAATAAAAAATAGTAAATTAAAAAGTTCAAATTAATTTC
AAATAAACAATAATTTCTATTCATATTTGATTAAATCATTTAATACCTTAATATGTTTGTATAATATGT
>TRINITY_DN46518_c1_g3_i2 from sample A7 / Example unspliced isoform:AGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAA
GAGCCAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCGGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGC
CAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAA
GAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGC
CACGCCGAGGAGAGTTTGGGAGTTCTATGAATGTCTCTCTGTTTACATTTTCTTTGTTTTGTCTTAAATTTAAACTGAAGCATGGCCATGCTCTTTTTTTAGTTTTTTTTTTGTATTTTTGTTTTACCTGTGATTCTGTCTTCTCTTTCATTTTTTTTTTCATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTC
TTTATGTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACAATGATGGAGTGATACAATGATATAAGGGATTCTGATGATACAAGGTATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGAGGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAAT
TTCTTTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCACGAAGGAACTTGTTATGTTTAAGgtatgatttgagattaaatttttggccatgtagatgatatttcagaacatgtcaaacttatgcttaggtgctctcttagtttgtcttttaatatatttggcatacataaaatgtgttatacacattacatgttt
cagcattatcactatgccataaataatttcgagtctataatgtactaatttttattattcttaaatcagttgttatttacttatattatattttaaataaattttagtttcatgtcagttattatttttaagaacaatattaatccactagtcaatattgtgtttgcctctcagGCAATGAAGTGGCAGATGTTTTGACA
GACATAGTGGCACATCAAAAGAAAGATGGAGATTTCTTTAAAGTAATGTTTGAAGAAGCAGATGGAGAATACTTGCATGGTCTAATGAGAATTCAATCTCATTTTTCTTAATTGTAAATCATATAATTTCTTTCTATGTAACACTAGACTAGTATATCAATAAAATTATCTTTTTACTTTATTGAGAAAGGGCAAGCCCT
TTCTCAAATCTCTCAAAGATAGCCATGGCCAAAGCTATCTTTGAGAAGTCTCCCTTCTTAGTGTTTGATTTATTTTATGCTTAGCTCTCACTTTATTAATTTTTAATTTAAGGTATGTTATACTTTGTGAATTTGCAGCAAACTTTTATAATAAAAAATAGTAAATTAAAAAGTTCAAATTAATTTCAAATAAACAATAA
TTTCTATTCATATTTGATTAAATCATTTAATACCTTAATATGTTTGTATAATATGT
Intron 5 GCCGAGGCCG ... GAAGAGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.76 | 40 | 45 | 48 |
| A2 | 65.62 | 33 | 64 | 62 |
| A3 | 53.07 | 42 | 41 | 54 |
| A4 | 62.86 | 26 | 47 | 41 |
| A5 | 38.14 | 30 | 19 | 18 |
| A6 | 46.96 | 48 | 39 | 46 |
| A7 | 50.88 | 125 | 130 | 129 |
| A8 | 56.6 | 69 | 85 | 95 |
| A9 | 44.09 | 71 | 57 | 55 |
| A10 | 53.4 | 89 | 105 | 99 |
>TRINITY_DN42815_c1_g1_i19 from sample A9 / Example spliced isoformGCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAG
GCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGG
CCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAG
AGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAAGCCTTGTTGCTCAGAGCAGAGAAGAGGCATCTAGGCCAGAGCCATGCCCATCAGAGAAGAGGCATTTAGGCCAGAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAG
TTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTTTTTGAGTTTTTATTTTTATTTTTACCTGTGATTCTATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGG
GCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATCGAGGGGTGGAGTAATAAAATGATGGTGTGAAGAATAGCAGATGATATAAGGGATTCTATGTTTTCTGGACATCATTGAAAGCGCAACAGCCACAAGGGCAGAGGCAAAGTTACAAGACAAGATACCATATATGCAGCTGCAATTCAGCTCACCCTTCAAATTTC
ATTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCATGAACTTAGTTGTTGTTTTGTTGATGTGCTTGTCAAATAAAGATTATCAAGGCACTGGAGTGGCAATGAAGTGGTGGATGTTTTGACAAACATGATGGCATATCAAAAGAAAGATAGATATTTCTTTTTCATGCAATGTTTGAAGAAGCTGGAGAATACT
TGCATGGATTAATGAAAATTCATTCTCATTTGTTTAATTGTAAATAATATTTTTTTTATGTAACACTAGACTGGTATATCAATAAAATTATTTTTTATTTTTTGAGAAAGGGCTTGCCCTTTCTCAAATCTCTCGAGGATAGCTATGGCCAAAGCTATCCTTGAGAAGTCTCTCTTCTTATTGTC
>TRINITY_DN42815_c1_g1_i15 from sample A9 / Example unspliced isoform:GCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAG
GCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCGGGCCGAGCAAAGAAGAGCCAGgccgaggccgagcaaagaagagccaggctgaggcgtttaggcaaggccgagcaaagaagagccaggcccgagcaaagaagagccagGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGC
CAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGC
CATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAAGCCTTGTTGC
TCAGAGCAGAGAAGAGGCATCTAGGCCAGAGCCATGCCCATCAGAGAAGAGGCATTTAGGCCAGAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAGTTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTTTTTGA
GTTTTTATTTTTATTTTTACCTGTGATTCTATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATCGAGGGGTGGAGTAATAAAATGATGGTGTGAAGAATAGCAGATGAT
ATAAGGGATTCTATGTTTTCTGGACATCATTGAAAGCGCAACAGCCACAAGGGCAGAGGCAAAGTTACAAGACAAGATACCATATATGCAGCTGCAATTCAGCTCACCCTTCAAATTTCATTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCATGAACTTAGTTGTTGTTTTGTTGATGTGCTTGTCAAATAAA
GATTATCAAGGCACTGGAGTGGCAATGAAGTGGTGGATGTTTTGACAAACATGATGGCATATCAAAAGAAAGATAGATATTTCTTTTTCATGCAATGTTTGAAGAAGCTGGAGAATACTTGCATGGATTAATGAAAATTCATTCTCATTTGTTTAATTGTAAATAATATTTTTTTTATGTAACACTAGACTGGTATATCA
ATAAAATTATTTTTTATTTTTTGAGAAAGGGCTTGCCCTTTCTCAAATCTCTCGAGGATAGCTATGGCCAAAGCTATCCTTGAGAAGTCTCTCTTCTTATTGTC
Intron 6 GCGCCGAGCA ... GAAGAGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.33 | 44 | 28 | 34 |
| A2 | 39.66 | 54 | 34 | 37 |
| A3 | 39.9 | 61 | 37 | 44 |
| A4 | 26.5 | 43 | 13 | 18 |
| A5 | 23.08 | 40 | 11 | 13 |
| A6 | 41.52 | 50 | 32 | 39 |
| A7 | 38.24 | 147 | 80 | 102 |
| A8 | 33.76 | 103 | 45 | 60 |
| A9 | 37.5 | 80 | 45 | 51 |
| A10 | 34.2 | 126 | 65 | 66 |
>TRINITY_DN43109_c2_g1_i5 from sample A8 / Example spliced isoformTTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGGGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCC
AGGCCGAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGG
CAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGC
CCGAGCAGAGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAGCCACGCCGAGGAGAGTTTGGGAGTTCTATGAATGTCTCTCTGTTTACATTTTCTTTGTTTTGTCTTAAATTTAAATTGAAGCATGGCCATGCTCTTTTTTTAGTTTTTTTTTTGTATTTTT
GTTTTACCTGTGATTCTGTCTTCTCTTTCATTTTTTTTTTCATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACAATGATGGAGTGATACAATGATATAAGGGATTCTGATGATACAAGGGATTCTATGTTTTCTGGACGTCATTGAGAG
CGCAACGGCCACAAGAGTCCAAGTTACAAGACAAGATACCATATATACAGCTGGAATTCACATGGCCCTCGAAGATTACA
>TRINITY_DN43109_c2_g1_i11 from sample A8 / Example unspliced isoform:TTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGGGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCC
AGGCCGAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCGGGCCGAGCAAAGAAGAGCCAGgcgccgagcaaagaagagccagGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCAT
GGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAG
TGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAGCCACGCCGAGGAGAGTTTGGGAGTTCTATGAATGTCTCTCTGTTTACATTTTCTTTGTTTTGTCTT
AAATTTAAATTGAAGCATGGCCATGCTCTTTTTTTAGTTTTTTTTTTGTATTTTTGTTTTACCTGTGATTCTGTCTTCTCTTTCATTTTTTTTTTCATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGTCTGGGTTTGGATAGAGGGGTGGAGTGATACAATGATGGAGTGATACAATGA
TATAAGGGATTCTGATGATACAAGGGATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGAGTCCAAGTTACAAGACAAGATACCATATATACAGCTGGAATTCACATGGCCCTCGAAGATTACA
Intron 7 GCCGAGCAAA ... TTTAGGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.19 | 41 | 55 | 69 |
| A2 | 64.44 | 40 | 66 | 79 |
| A3 | 63.56 | 43 | 69 | 81 |
| A4 | 68.63 | 24 | 47 | 58 |
| A5 | 50 | 35 | 43 | 27 |
| A6 | 58.02 | 51 | 57 | 84 |
| A7 | 56.95 | 127 | 161 | 175 |
| A8 | 58.68 | 75 | 112 | 101 |
| A9 | 55.17 | 78 | 87 | 105 |
| A10 | 59.23 | 95 | 152 | 124 |
>TRINITY_DN42815_c1_g1_i19 from sample A9 / Example spliced isoformGCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAG
GCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGG
CCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGTCACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAG
AGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAAGCCTTGTTGCTCAGAGCAGAGAAGAGGCATCTAGGCCAGAGCCATGCCCATCAGAGAAGAGGCATTTAGGCCAGAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAG
TTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTTTTTGAGTTTTTATTTTTATTTTTACCTGTGATTCTATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGG
GCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATCGAGGGGTGGAGTAATAAAATGATGGTGTGAAGAATAGCAGATGATATAAGGGATTCTATGTTTTCTGGACATCATTGAAAGCGCAACAGCCACAAGGGCAGAGGCAAAGTTACAAGACAAGATACCATATATGCAGCTGCAATTCAGCTCACCCTTCAAATTTC
ATTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCATGAACTTAGTTGTTGTTTTGTTGATGTGCTTGTCAAATAAAGATTATCAAGGCACTGGAGTGGCAATGAAGTGGTGGATGTTTTGACAAACATGATGGCATATCAAAAGAAAGATAGATATTTCTTTTTCATGCAATGTTTGAAGAAGCTGGAGAATACT
TGCATGGATTAATGAAAATTCATTCTCATTTGTTTAATTGTAAATAATATTTTTTTTATGTAACACTAGACTGGTATATCAATAAAATTATTTTTTATTTTTTGAGAAAGGGCTTGCCCTTTCTCAAATCTCTCGAGGATAGCTATGGCCAAAGCTATCCTTGAGAAGTCTCTCTTCTTATTGTC
>TRINITY_DN42815_c1_g1_i12 from sample A9 / Example unspliced isoform:GCCGGTTTGAAAGGTTATTATTGTATTACAGGAGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGAGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGgccgagcaaagaagagccag
gctgaggcgtttaggccaggcccagcaaagaagagccgggccgagcaaagaagagccaggccgaggccgagcaaagaagagccaggctgaggcgtttaggcaagGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTT
TAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGTATTTAAGCCAGAGCCACGCCCAGCCGAGAAGAGGAGCCAGCCGAGAGT
CACGCCATGCCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCCGAGCAGAAAAAGTGCCGAGCAAAGAAGAGGAAACCCACGCCCAGCTTTGAATAGGAGCCTTGTTGGCCCGAGCAGAGAAGAGGCATTTAGGCCAGAGCGATGCCCAAGCAGAGACAGGCCGCAGCAGAGAAGAAAAGCCTTGAAAAGCCTT
GTTGCTCAGAGCAGAGAAGAGGCATCTAGGCCAGAGCCATGCCCATCAGAGAAGAGGCATTTAGGCCAGAGCCACGCCCAGCAGAGAAGAGAAGCCACGCCAAGGGGAGTTGAGCCGAATAGAGTTTGGGAGTTCTATGAATGTCTCTCGATTTATATTTTCTTTCTTTTGTCTTAAATTGAAGCATGGCCATGCTCTTT
TTTGAGTTTTTATTTTTATTTTTACCTGTGATTCTATCTTCTTTTTCTTTTGTTCTTTTCATTTTCTTTTGTTCTTTTTATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATCGAGGGGTGGAGTAATAAAATGATGGTGTGAAGAATAGCAG
ATGATATAAGGGATTCTATGTTTTCTGGACATCATTGAAAGCGCAACAGCCACAAGGGCAGAGGCAAAGTTACAAGACAAGATACCATATATGCAGCTGCAATTCAGCTCACCCTTCAAATTTCATTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCATGAACTTAGTTGTTGTTTTGTTGATGTGCTTGTCAA
ATAAAGATTATCAAGGCACTGGAGTGGCAATGAAGTGGTGGATGTTTTGACAAACATGATGGCATATCAAAAGAAAGATAGATATTTCTTTTTCATGCAATGTTTGAAGAAGCTGGAGAATACTTGCATGGATTAATGAAAATTCATTCTCATTTGTTTAATTGTAAATAATATTTTTTTTATGTAACACTAGACTGGTA
TATCAATAAAATTATTTTTTATTTTTTGAGAAAGGGCTTGCCCTTTCTCAAATCTCTCGAGGATAGCTATGGCCAAAGCTATCCTTGAGAAGTCTCTCTTCTTATTGTC
Intron 8 GCCGAGGCCG ... GAAGAGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.26 | 51 | 58 | 63 |
| A2 | 51.81 | 60 | 65 | 64 |
| A3 | 47.16 | 79 | 66 | 75 |
| A4 | 54.05 | 51 | 58 | 62 |
| A5 | 37.5 | 40 | 27 | 21 |
| A6 | 50.45 | 55 | 50 | 62 |
| A7 | 49.3 | 162 | 160 | 155 |
| A8 | 46.92 | 112 | 97 | 101 |
| A9 | 52.57 | 83 | 90 | 94 |
| A10 | 46.58 | 129 | 120 | 105 |
>TRINITY_DN120049_c1_g2_i10 from sample A1 / Example spliced isoformGAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGGGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAG
AGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCCGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAG
CAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAGAGGCATTTAAGCCAGAGCCACGCCGAGAGTCACGCCGTGCCAAGCAGAGAAGAGGCATTTAAGCCAGAAGAACTACGCC
GAGCAGAGAAGAGGAAACCCATGCCCAGAAGATAGGATAGGAGAGTTGAGCTTACGGCTGTGTGACAGCCTCTATGTAGATTTCATGAGCCAGGCCGCATCAGATAATTTCAAGAGCTAGGCGGCAGCAGAGAAGAAGCGTTTAGGCCACGCCGAACAGAGAAGAGCCTTGTTAGCTAGAGCAGAGAAGAGGCGTTTAGG
CCAGAGCCACGCCCAGTAGAGAAGAGAAGCCGGGCCGAGGAGAGTTGAGCCGAATAGAATTTGGGAGTTCTATGAATGTCTCTCGGTTTACATTTTCTTTCTTTTGTCTTTAATTGAAGCATGGCCATGCTCGTCTTTTGAGATTTTTTTTAACCTGTGATTCTGTTTTCTCTTTCTATGTTTTCTGGACGTCATTGAGA
GCGCAACGGCCACAAGAGGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTTTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCACGAAGGAACTTGTTATGTTTAAGGTATGATTTGAGATTAAATTTTTGGCCATGTAGATGATATTTCAGAACATGTC
AAACTTATGCTTAGGTGCTCTCTTAGTTTGTCTTTTAATATATTTGGCATACATAAAATGTGTTATACACATTACATGTTTCAGCATTATCACTATGCCATAAATAATTTCGAGTCTATAATGTACTAATTTTTATTATTCTTAAATCAGTTGTTATTTACTTATATTATATTTTAAATAAATTTTAGTTTCATGTCAGT
TATTATTTTTAAGAACAATATTAATCCACTAGTCAATATTGTGTTTGCCTCTCAGGCAATGAAGCG
>TRINITY_DN120049_c1_g2_i2 from sample A1 / Example unspliced isoform:GAAATTGTAGTCTTATTGTTTTCTTGGACGGAACAAGAAAACAGGAGGAGAATGTGCCGAGCAGAGACTGGGGCTTGCGGCTGTGTGACAGGCCGCAGCAGAGAAGATGCGTCTAGGCCAGGCCGATCAAAGAAGAGCCAGGCTGAGGCCGAGCAAAGAAGAGCCAGGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAG
AGCCAGGCCGAGCAAAGAAGAGCCAGgccgaggccgagcaaagaagagccagGCTGAGGCGTTTAGGCAAGGCCGAGCAAAGAAGAGCCAGgccgaggccgagcaaagaagagccagGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCGGGCCGAGCAAAGAAGAGCCAGgccgaggccgagcaaagaagagcc
agGCTGAGGCGTTTAGGCCAGGCCCAGCAAAGAAGAGCCAGGCCGAGGCGTTTAGGCCAGGCCTTTGGACCATGCCGAGCAAAGAAGAGCCATGTTGGCCAGAGCCACGCCATGGCAAGTATAGAAGAGGCATTTAGGCCAGAAGAACCATGCAGAGCAGAGAAGAGGCAGTTAGGCCAGAGCCATGCCCAACAGAGAAG
AGGCATTTAAGCCAGAGCCACGCCGAGAGTCACGCCGTGCCAAGCAGAGAAGAGGCATTTAAGCCAGAAGAACTACGCCGAGCAGAGAAGAGGAAACCCATGCCCAGAAGATAGGATAGGAGAGTTGAGCTTACGGCTGTGTGACAGCCTCTATGTAGATTTCATGAGCCAGGCCGCATCAGATAATTTCAAGAGCTAGG
CGGCAGCAGAGAAGAAGCGTTTAGGCCACGCCGAACAGAGAAGAGCCTTGTTAGCTAGAGCAGAGAAGAGGCGTTTAGGCCAGAGCCACGCCCAGTAGAGAAGAGAAGCCGGGCCGAGGAGAGTTGAGCCGAATAGAATTTGGGAGTTCTATGAATGTCTCTCGGTTTACATTTTCTTTCTTTTGTCTTTAATTGAAGCA
TGGCCATGCTCGTCTTTTGAGATTTTTTTTAACCTATGATTCTGTTTTCTCTTTCTTTTGTTTTCTTCATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATGTTTTGGGTCTGGGTTTGGATAGAGTGATAAAATGATGCTGTGAAGAATAGCAGATGATATAAGGGATTCTAT
GTTTTCTGGACATCATTGAAAGCGCAACAGCCACAAGGTAATGTGTAAATATGAAAATGTATTTATACCGCATTTTATTTTTGTATTTTTCTGT
Intron 9 GTAATGTGTT ... TTTATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.29 | 28 | 14 | 3 |
| A2 | 38.89 | 11 | 6 | 8 |
| A3 | 3.61 | 40 | 1 | 2 |
| A4 | 19.15 | 19 | 7 | 2 |
| A5 | 31.58 | 13 | 6 | 6 |
| A6 | 15.64 | 89 | 22 | 11 |
| A7 | 16.23 | 222 | 69 | 17 |
| A8 | 13.87 | 264 | 63 | 22 |
| A9 | 17.03 | 134 | 41 | 14 |
| A10 | 12.56 | 268 | 62 | 15 |
>TRINITY_DN43109_c2_g1_i2 from sample A8 / Example spliced isoformGTTGAGCTTACGGCTGTGTAACAGGCCTGTATGTGGATTTCAAGGGCCAGGCCGCAGCAGAGAATTTCAAGAGCTAGGCCGCAACAGAGAAGAGGCGTTTAGGCCAGGCCGAGAAAAGAAGAGCCATGTTAGCCAGAGCCATGCCATGGCAAGCATAGAAGAGGCATTTAGGCCAGAAGAACCACGCCGAGCAGAGAATA
GGCATTCAGGCCAGAGCCATGCCCAACAGAGAAGAGGCATTTAAGCCAGAGCCACGCCGAGAGTCACGCCGTGCCAAGCAGAGAAGAGGCATTTAAGCCAGAAGAACTACGCCGAGCAGAGAAGAGGAAACCCATGCCCAGAAGATAGGATAGGAGAGTTGAGCTTACGGCTGTGTGACAGCCTCTATGTAGATTTCATG
AGCCAGGCCGCATCAGATAATTTCAAGAGCTAGGCGGCAGCAGAGAAGAAGCGTTTAGGCCACGCCGAACAGAGAAGAGCCTTGTTAGCTAGAGCAGAGAAGAGGCGTTTAGGCCAGAGCCACGCCCAGTAGAGAAGAGAAGCCGGGCCGAGGAGAGTTGAGCCGAATAGAATTTGGGAGTTCTATGAATGTCTCTCGGT
TTACATTTTCTTTCTTTTGTCTTTAATTGAAGCATGGCCATGCTCGTCTTTTGAGATTTTTTTTAACCTGTGATTCTGTTTTCTCTTTCTTTTGTTTTCTTCATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGTCTGGGTTTGGATAGAGTGATAAAATGATGC
TGTGAAGAATAGCAGATGATATAAGGGATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGAGGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTTTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCACGAAGGAACTTGTTATGTTTA
AGGTATGATTTGAGATTAAATTTTTGGCCATGTAGATGATATTTCAGAACATGTCAAACTTATGCTTAGGTGCTCTCTTAGTTTGTCTTTTAATATATTTGGCATACATAAAATGTGTTATACACATTACATGTTTCAGCATTATCACTATGCCATAAATAATTTCGAGTCTATAATGTACTAATTTTTATTATTCTTAA
ATCAGTTGTTATTTACTTATATTATATTTTAAATAAATTTTAG
>TRINITY_DN43109_c2_g1_i6 from sample A8 / Example unspliced isoform:GTTGAGCTTACGGCTGTGTAACAGGCCTGTATGTGGATTTCAAGGGCCAGGCCGCAGCAGAGAATTTCAAGAGCTAGGCCGCAACAGAGAAGAGGCGTTTAGGCCAGGCCGAGAAAAGAAGAGCCATGTTAGCCAGAGCCATGCCATGGCAAGCATAGAAGAGGCATTTAGGCCAGAAGAACCACGCCGAGCAGAGAATA
GGCATTCAGGCCAGAGCCATGCCCAACAGAGAAGAGGCATTTAAGCCAGAGCCACGCCGAGAGTCACGCCGTGCCAAGCAGAGAAGAGGCATTTAAGCCAGAAGAACTACGCCGAGCAGAGAAGAGGAAACCCATGCCCAGAAGATAGGATAGGAGAGTTGAGCTTACGGCTGTGTGACAGCCTCTATGTAGATTTCATG
AGCCAGGCCGCATCAGATAATTTCAAGAGCTAGGCGGCAGCAGAGAAGAAGCGTTTAGGCCACGCCGAACAGAGAAGAGCCTTGTTAGCTAGAGCAGAGAAGAGGCGTTTAGGCCAGAGCCACGCCCAGTAGAGAAGAGAAGCCGGGCCGAGGAGAGTTGAGCCGAATAGAATTTGGGAGTTCTATGAATGTCTCTCGGT
TTACATTTTCTTTCTTTTGTCTTTAATTGAAGCATGGCCATGCTCGTCTTTTGAGATTTTTTTTAACCTGTGATTCTGTTTTCTCTTTCTTTTGTTTTCTTCATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGTCTGGGTTTGGATAGAGTGATAAAATGATGC
TGTGAAGAATAGCAGATGATATAAGGGATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGgtaatgtgtttcattatagtaaatatcaaaatgtatttataccatatgttattttgtatttttctattgttttgtgtggctaatatttttggtttattttagAGGACAGAGGCAGAGTTAAGACGAGAT
ACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTTTCAAGATTACATGTGTACAAGAAAACATGGTTATGCCACGAAGGAACTTGTTATGTTTAAGGCAATGAAGTGGCAGATGTTTTGACAGACATAGTGGCACATCAAAAGAAAGATGGAGATTTCTTTAAAGTAATGTTTGAAGAAGCAGATGGAGAAT
ACTTGCATGGTCTAATGAGAATTCAATCTCATTTTTCTTAATTGTAAATCATATAATTTCTTTCTATGTAACACTAGACTAGTATATCAATAAAATTATCTTTTTACTTTATTGAGAAAGGGCAAGCCCTTTCTCAAATCTCTCAAAGATAGCCATGGCCAAAGCTATCTTTGAGAAGTCTCCCTTCTTAGTGTTTGATT
TATTTTATGCTTAGCTCTCACTTTATTAATTTTTAATTTAAGGTATGTTATACTTTGTGAATTTGCA