NA ----> NA

Intron 1 GTTTTTTTTT ... TTCGGCGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	62.81	12.5	21	2
A2	40.54	22	15	2
A3	56.16	12.5	16	0
A4	60.56	15	23	0
A5	37.5	5	3	0
A6	0	1	0	0
A7	-1	0	0	0
A8	-1	0	0	0
A9	0	1	0	0
A10	-1	0	0	0

>TRINITY_DN133383_c2_g1_i26 from sample A1 / Example spliced isoform

GGGAAGTTGGCAACAACCAAGCACACAGAGTTATGTGTGTGAGTGACAACAATTTGGGCCCTAAGAAGGCCGAGTGGAGAAGATACCATAACCATTGCAACTCGTGGCACAGGATTGATGACCTATAGGAATCATGAGTGTACAAAATGGACATTCTATCTTTATAAAACAATTTCTAAGGGAGGGGAAGAAAGAACATT
GCAGAAAAGATGATCTACAGAGAGAGGAAGTTTGCAATCTTTTGGTTTTTTTTTGTCCTTCAGTTTCTTGAGTTTAATCATGGCCATGCTTTGTTTAGTTTGTCGTTGTTATGATTGTGTTTCTTTGTTTTGCAATTTTTTTTATGGTTTGGTTTTGCGTGTTTTGGCCCAGGGGGAGTGGTACAAATAGTATACAAA

>TRINITY_DN133383_c2_g1_i15 from sample A1 / Example unspliced isoform:

GAGAGGAAGTTTGCAATCTTTTGgtttttttttgtccttcagtttcttgagtttaatcatggccatgctttgtttagtttgtcatgtgttatgactgtttctctttgttttgcaatttttttatggtttggttttggtttggttttgcttgttttggccggagggggaaagtggtactaatggtatacataagagatgag
atggggattattgttcaaacatgaagccagtgattgcaggtgtagaatctaagaaggtagagtggtgaagattccttgcaaatggaaaaagtagcgcggaggatagggcactatcatgtttctaatgggtgggtgattcataagtttcttggaactatcatagagacattatattgctgttgttatcatgtcgatttgtc
caatgagtccacggaaattggcaatggccaagcagtacacatagcgagtgactacactttgggcccttagaaggccaagcgacatgttgctaatgggtgggaaattcaaaagtttcttggaattatcatagagacattatattagaagataccataaatattgaaaattcatggcaaaggattgggaagaaagcacattg
caggaaagataattttggatttggtttgatttttctgttcggcgaagGTTTTTTTTTGTCCTTCAGTTTCTTGAGTTTAATCATGGCCATGCTTTGTTTAGTTTGTCGTTGTTATGATTGTGTTTCTTTGTTTTGCAATTTTTTTTATGGTTTGGTTTTGCGTGTTTTGGCCCAGGGGGAGTGGTACAAATAGTATACAA
A

Intron 2 GTATGTTTCC ... TTTATCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	42.86	12	9	3
A2	63.89	13	23	5
A3	31.82	15	7	1
A4	40	12	8	4
A5	66.67	4	8	0
A6	-1	0	0	0
A7	100	0	2	0
A8	50	1	1	0
A9	0	2	0	0
A10	-1	0	0	0

>TRINITY_DN133383_c2_g1_i6 from sample A1 / Example spliced isoform

GGGAAGTTGGCAACAACCAAGCACACAGAGTTATGTGTGTGAGTGACAACAATTTGGGCCCTAAGAAGGCCGAGTGGAGAAGATACCATAACCATTTATCTTATTACGGCTACGTTGTAGATGGCCTATAGGAATCATGAGCGTACAAAATGGACTTTCTATCTTTATAAAACAATTTCTAAGGGAGGGGAAGAAAGAAC
ATTTCAGAAAAGATGATGTACAAAGAGAGGAAGTTTGCAATCTTTTGTTTGTTTTATTTGTGTGTGTCCTTCAGTTTCTTGAGTTT

>TRINITY_DN133383_c2_g1_i8 from sample A1 / Example unspliced isoform:

GGGAAGTTGGCAACAACCAAGCACACAGAGTTATGTGTGTGAGTGACAACAATTTGGGCCCTAAGAAGGCCGAGTGGAGAAGATACCATAACCATTTATCTTATTACGGCTACGTTGTAGATGGCCTATAGGAATCATGAGCGTACAAAATGGACTTTCTATCTTTATAAAACAATTTCTAAGGGAGgtatgtttcctat
tatgaaaaaacattggttttgaaatattctcactattattattcatctatgtattttaatctaataattgacacttttttatctcagGGGAAGAAAGAACATTGCAGA