sp|Q9M2Z1|BAME2_ARATH ----> Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2

Intron 1 GTACTCTAGC ... TGTGATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	46.15	7	1	6
A2	50	10	10	10
A3	75	3	0	9
A4	-1	0	0	0
A5	-1	0	0	0
A6	57.89	8	3	11
A7	70	3	0	7
A8	-1	0	0	0
A9	50	2	0	2
A10	100	0	0	1

>TRINITY_DN36516_c0_g1_i1 from sample A6 / Example spliced isoform

GTAAAACCCCAACTTTGGCAATGGTCGATTTTGCCCCGATTCTTGATCTCTGCAGAGAAACTATTACCATTTGAAGAGCCAATCCCCATAAATACTCACTGCAACTTGTTCGCCATTGAGAATGATGCCTCTATACACAACTCCCGCTCCTCCTTTGCCGATGATGTTCTCTTCTTTTATGCATTCTAGAATGTCATCGC
TTCCAAAGTTCAGTTTTTGGAAGGCCGGTCATCCTTTAGATGGCTAATAACAACGAAGGGAAGTTCCAGCTTGATGTGGGGCAAATGGTGCTTTGGAACAGAGTCCGCCCTTTGTCATTTCCTAATTACAAGCTATACAAACCCAATGGGGGACTCTTAAGGGCAAGGAAGCGCTGGCTTCTCATTGCTGCTCTCAGGTT
GGACTTGGAAATTTATACTAATGGGTTATCTGCTTCAATATTGGCAGCATCACGATTAGGATTCTGACCCCAACCACATATAATCTCCAAATCGTGCCCTAAGGATAATAGGATAAGCTTTCTTTCGTGTTGGTGGGTCTCCATACACATAAGCTTGGACTTCTCTTAGCGCTGGGACTCTCGTCTGCTCGCTGATGTTG
GGAATTGGGGCATTCATAATTCAGACGAGAGCCATCAAGAAAGAAGGCCACGGCAGGTCCTGGAAAATGCACGGCCTTCCATAAGTTGAACTTACATCCTAGATGCATAAAATAAGACAACTTCATCGGCAAGGAGGAACGGGAGCTGTGTATAGAGGCATCATGCCCAGTGGCGAATAAATTGCAGTAAGGACTTATGG
GGTTTGGCTCTGCAAATGATCATGGTTTTTCTGCATAGATCAAGACTCTCGGCAAAATCCGACCTCTGCACATAGTTAGATTTTCGGGGTTTTACTCCAGACATGACACTAATCTTCTGCTCTATGAATACATGCCTTTCGGAAGCATGGGGAAGCTGTCGCATTGAAGTAATGGCGGTTAGGGTACTAGATACAAAATT
GCAGTGGAGGCTACCAAGAGGTTGTACTATCTTTACCATGTTTGTTGGTTGCTTATCTTTAAAATCCAACAGGATTCTTCATGGGGACTCCAACTTTGAAGCCCATGTTGCAGATTTCAAGTTCTTGCATCAATCCCGTGCCTCCTAAATGCATGCTTTTATGGTAGGCTCCTTTGGCTACACAGCTCCAGATCAGCGGG
TCAACATCAATAATATTGTCTGTTGTTGCTGTATATGATTAGAATATTGCAGAACGTTTGTAGAAGTCGAAATATTTTGCTGAATTGCTTGATATTGTTCGGGAGCAGCAAGTTATCCAAAATTCTAGTTTGATTTTTTAATATGTAAACACAGAATACAAAATCCTTTATCCAACGTTCTGAGATTATGATGTTTGAGA
CTGTATTTATGCGCTTCTCAAAGTGTGTTTTGTATTATAACTGTTTTAATGTATTTGATGTGTG

>TRINITY_DN36516_c0_g1_i3 from sample A6 / Example unspliced isoform:

AGGATTCTGACCCCAACCACATAgtactctagcttctcctacagattggatctgtaacttaatcatattttaccctaagtacatagtactgtagcttctcctacagatcgaatccataacttagtcatatttctgggctgcttttggacattaagtttttacattcttctggctagtgggtcatattaattagcttcttt
tggatgtgtgatgcagTAATCTCCAAATCGTGCCCTAAGGATAATAGGATAAGCTTTCTTTCGTGTTGGTGGGTCTCCATACACATAAGCTTGGACTTCTCTTAGCGCTGGGACTCTCGTCTGCTCGCTGATGTTGGGAATTGGGGCATTCATAATTCAGACGAGAGCCATCAAGAAAGAAGGCCACGGCAGGTCCTGGA
AAATGCACGGCCTTCCATAAGTTGAACTTACATCCTAGATGCATAAAATAAGACAACTTCATCGGCAAGGAGGAACGGGAGCTGTGTATAGAGGCATCATGCCCAGTGGCGAATAAATTGCAGTAAGGACTTATGGGGTTTGGCTCTGCAAATGATCATGGTTTTTCTGCATAGATCAAGACTCTCGGCAAAATCCGACC
TCTGCACATAGTTAGATTTTCGGGGTTTTACTCCAGACATGACACTAATCTTCTGCTCTATGAATACATGCCTTTCGGAAGCATGGGGAAGCTGTCGCATTGAAGTAATGGCGGTTAGGGTACTAGATACAAAATTGCAGTGGAGGCTACCAAGAGGTTGTACTATCTTTACCATGTTTGTTGGTTGCTTATCTTTAAAA
TCCAACAGGATTCTTCATGGGGACTCCAACTTTGAAGCCCATGTTGCAGATTTCAAGTTCTTGCATCAATCCCGTGCCTCCTAAATGCATGCTTTTATGGTAGGCTCCTTTGGCTACACAGCTCCAGATCAGCGGGTCAACATCAATAATATTGTCTGTTGTTGCTGTATATGATTAGAATATTGCAGAACGTTTGTAGA
AGTCGAAATATTTTGCTGAATTGCTTGATATTGTTCGGGAGCAGCAAGTTATCCAAAATTCTAGTTTGATTTTTTAATATGTAAACACAGAATACAAAATCCTTTATCCAACGTTCTGAGATTATGATGTTTGAGACTGTATTTATGCGCTTCTCAAAGTGTGTTTTGTATTATAACTGTTTTAATGTATTTGATGTGTG

Intron 2 GTTGGACTTG ... TGTGATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	8	2	6
A2	38.89	11	4	10
A3	55.56	4	1	9
A4	27.27	8	6	0
A5	0	1	0	0
A6	35.14	12	2	11
A7	25	12	1	7
A8	-1	0	0	0
A9	23.08	5	1	2
A10	33.33	1	0	1

>TRINITY_DN25158_c0_g1_i3 from sample A9 / Example spliced isoform

CTGCAGAGAAACTATTACCATTTGAAGAGCCAATCCCCAAAAATACTCACTGCAACTTGTTCGCCATTGAGAATGATGCCTCTATACACAACTCCCGCTCCTCCTTTGCCGATGATGTTCTCTTCTTTTATGCATTCTAGAATGTCATCGCTTCCAAAGTTCAGTTTTTGGAAGGCCGGTCATCCTTTAGATGGCTAATA
ACAACGAAGGGAAGTTCCAGCTTGATGTGGGGCAAATGGTGCTTTGGAACAGAGTCTGCCCTTTGTCATTTCCTAATTACAAGCTATACAAACCCACTGGGGGACTCTTAAGGGCAAGGAAGCGCTGGCTTCTCATTGCTGCTCTCAGTAATCTCCAAATCGTGCCCTAAGGATAATAGGATAAGCTTTCTTTCGTGTTG
GTGGGTCTCCATACACATAAGCTTGGACTTCTCTTAGCGCTGGGACTCTCGTCTGCTCGCTGATGTTGGGAATTGGGGCATTCATAATTCAGACGAGAGCCATCAAGAAAGAAGGCCACGGCAGGTCCTGGAAAATGCACGGCCTTCCATAAGTTGAACTTACATCCTAGATGCATAAAATAAGACAACTTCATCGGCAA
GGAGGAACGGGAGCTGTGTATAGAGGCATCATGCCCAGTGGCGAATAAATTGCAGTAAGGACTTATGGGGTTTGGCTCTGCAAATGATCATGGTTTTTCTGCATAGATCAAGACTCTCGGCAAAATCCGACCTCTGCACATAGTTAGATTTTCGGGGTTTTACTCCAGACATGACACTAATCTTCTGCTCTATGAATACA
TGCCTTTCGGAAGCATGGGGAAGCTGTCGCATTGAAGTAATGGCGGTTAGGGTACTAGATACAAAATTGCAGTGGAGGCTACCAAGAGGTTGTACTATCTTTACCATGTTTGTTGGTTGCTTATCTTTAAAATCCAACAGGATTCTTCATGGGGACTCCAACTTTGAAGCCCATGTTGCAGATTTCAAGTTCTTGCATCA
ATCCCGTGCCTCCTAAATGCATGCTTTTATGGTAGGCTCCTTTGGCTACACAGCTCCAGATCAGCGGGTCAACATCAATAATATTGTCTGTTGTTGCTGTATATGATTAGAATATTGCAGAACGTTTGTAGAAGTCGAAATATTTTGCTGAATTGCTTGATATTGTTCGGGAGCAGCAAGTTATCCAAAATTCTAGTTTG
ATTTTTTAATATGTAAACACAGAATACAAAATCCTTTATCCAACGTTCTGAGATTATGATGTTTGAGACTGTATTTATGCGCA

>TRINITY_DN25158_c0_g1_i1 from sample A9 / Example unspliced isoform:

CTGCAGAGAAACTATTACCATTTGAAGAGCCAATCCCCAAAAATACTCACTGCAACTTGTTCGCCATTGAGAATGATGCCTCTATACACAACTCCCGCTCCTCCTTTGCCGATGATGTTCTCTTCTTTTATGCATTCTAGAATGTCATCGCTTCCAAAGTTCAGTTTTTGGAAGGCCGGTCATCCTTTAGATGGCTAATA
ACAACGAAGGGAAGTTCCAGCTTGATGTGGGGCAAATGGTGCTTTGGAACAGAGTCTGCCCTTTGTCATTTCCTAATTACAAGCTATACAAACCCACTGGGGGACTCTTAAGGGCAAGGAAGCGCTGGCTTCTCATTGCTGCTCTCAGgttggacttggaaatttatactaatgggttatctgcttcaatattggcagca
tcacgattaggattctgaccccaaccacatagtactctagcttctcctacagattggatctgtaacttagtcatattttaccctaagtacatagtactgtagcttctcctacagatcgaatccataacttagtcatatttctgggctgcttttggacattaagtttttacattcttctggctagtgggtcatattaatta
gcttcttttggatgtgtgatgcagTAATCTCCAAATCGTGCCCTAAGGATAATAGGATAAGCTTTCTTTCGTGTTGGTGGGTCTCCATACACATAAGCTTGGACTTCTCTTAGCGCTGGGACTCTCGTCTGCTCGCTGATGTTGGGAATTGGGGCATTCATAATTCAGACGAGAGCCATCAAGAAAGAAGGCCACGGCAG
GTCCTGGAAAATGCACGGCCTTCCATAAGTTGAACTTACATCCTAGATGCATAAAATAAGACAACTTCATCGGCAAGGAGGAACGGGAGCTGTGTATAGAGGCATCATGCCCAGTGGCGAATAAATTGCAGTAAGGACTTATGGGGTTTGGCTCTGCAAATGATCATGGTTTTTCTGCATAGATCAAGACTCTCGGCAAA
ATCCGACCTCTGCACATAGTTAGATTTTCGGGGTTTTACTCCAGACATGACACTAATCTTCTGCTCTATGAATACATGCCTTTCGGAAGCATGGGGAAGCTGTCGCATTGAAGTAATGGCGGTTAGGGTACTAGATACAAAATTGCAGTGGAGGCTACCAAGAGGTTGTACTATCTTTACCATGTTTGTTGGTTGCTTAT
CTTTAAAATCCAACAGGATTCTTCATGGGGACTCCAACTTTGAAGCCCATGTTGCAGATTTCAAGTTCTTGCATCAATCCCGTGCCTCCTAAATGCATGCTTTTATGGTAGGCTCCTTTGGCTACACAGCTCCAGATCAGCGGGTCAACATCAATAATATTGTCTGTTGTTGCTGTATATGATTAGAATATTGCAGAACG
TTTGTAGAAGTCGAAATATTTTGCTGAATTGCTTGATATTGTTCGGGAGCAGCAAGTTATCCAAAATTCTAGTTTGATTTTTTAATATGTAAACACAGAATACAAAATCCTTTATCCAACGTTCTGAGATTATGATGTTTGAGACTGTATTTATGCGCA