NA ----> NA

Intron 1 GTATGTATGG ... GTATGTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	28.21	44.7	10	18.3
A2	44.79	24.7	2	20
A3	29.11	27.7	3	11.3
A4	40.96	23.3	4	16.3
A5	20	18	0	4.7
A6	6.06	10	2	0.7
A7	25.62	26.7	2	9.3
A8	14.26	58.7	2	10.3
A9	10.29	39.3	1	4.7
A10	11.11	30	0	4

>TRINITY_DN121416_c1_g1_i4 from sample A2 / Example spliced isoform

GTTTGCATTGCAAATGAACAACAAAGGATGGGTTTATGATGATTCCATAGGATTTTGCAATGTCCAAGGGCGAGGAGATCTTCCAGGGCTTATTGATGACGGTTTTTGTTGCTATAATGTTCATTGGTTTTACGATGATTCCATAAGAGTTGGTAATGACCAAGGGTGAGGAGTGAGTGATTGCAGTTGCAGAGTCTAAG
AAGGCCAAGTTGTGAAGATACTTTATCCGAAGCAAATGTAGTGCACAGGATGGGTGGTCAGTTTTAGTGTGGATGAGTAGTTGAAATACAAATTGGACTCTTTGTCAGTATAAAACAAACTCTATCCGAGAATACAAATTGGACTCTCTATCAGTATAAAGCAAACTCTATGCGAGGTGGTC

>TRINITY_DN121416_c1_g1_i9 from sample A2 / Example unspliced isoform:

TGCAATGTCCAAGGGCGAGGAGATCTTCCAGGGCTTATTGATGACGGTTTTTGTTGCTATAATGTTCATTGGTTTTACGATGATTCCATAAGAGTTGGTAATGACCAAGGGTGAGGAGgtatgtatggttatttcatcgccctatttatttgttatttaatttcttgtgtagtctatttgtggccccatactcaagtata
cagatcttgtatgtgtagTGAGTGATTGCAGTTTCAGAGTCTAAGAAGGCCAAGTTGTGAAGATACTTTATCCGAAGCAAATGTAGTGCACAGGATGGGTGAGTCATTTTTTCCTCCTATAGAATAATATTTTCATTAACGCAATGAAATAGATGCTTGCACAATGATTTTCCCTTCTGCCATGGTTACCAAGTACGATT
ATTTTGTTAATGCATTTTAGATTAAAGTTCTCCTTCATTAGGCTATTCTAGCCATGGTTTTGTTAAAATAATGTAACTGCGGAAGATATTCTATTTATATTATTGTATTCCTCCTCCGGGTGATGATGGTCATGTAATTAATAATGTAAAGATCATTGAAAGAATCAATGTAAACCCTAGGTCATGTGTCGGCCTAGAAA
ACCCCCCAAAAGATTATTATATTATGTAATTGACCAGTCAAGTAGAGAAGTCGGCC

Intron 2 GTATGTATGG ... TTGTGTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	47.32	29.8	26.5	27.3
A2	35.8	38.3	23.5	18.5
A3	49.8	25.8	26.3	22.8
A4	33.32	26	18	7.5
A5	47.77	19	18	16.5
A6	60.72	1.5	2.3	1
A7	54.94	3.8	5	3
A8	49.37	4	4.5	2.5
A9	-1	0	0	0
A10	26.66	4	1	2

>TRINITY_DN121416_c1_g1_i10 from sample A2 / Example spliced isoform

GTTCCATACGAGTGGGTGTTGCCAAGGGAAAGGAGTGAGTGACTAAAGTTGTAGAGTGTAAGAAGTTCGGGTGGTGAAGATACCGTTTGCATTGCAAATGAACAACAAAGGATGGGTTTATGATGATTCCATAGGATTTGGCAATGTCCAACGGCGAGGAGGAGGAGAAGATACCTTGATACCAAAAATGTAGGACAGAG
GGTGGGCTTATTGATGATGGTTGTTGCTGCTATAATGTTCATTGGTTTACGATGATTCCATAAGAGTTGGCAATGGCCAAGGGTGAGGAGTGAGTGATTGTAGCTGCAGAGTCTAAGAAGGCCAAGTTGTGAAGATACTTTATCCTAGGAAAATGCAGTGCACAAGATGGGTGGTCGGTTTTAGTGTGGATGAGTAGTTG
AAATACAAATTGGACTCTTTGTCAGTATAAAACAAACTCTATCCGAGAATACAAATTGGACTCTCTATCAGTATAAAGCAAACTCTATGCGAGGTGGTC

>TRINITY_DN121416_c1_g1_i14 from sample A2 / Example unspliced isoform:

TTGTAGAGTGTAAGAAGTTCGGGTGGTGAAGATACCGTTTGCATTGCAAATGAACAACAAAGGATGGGTTTATGATGATTCCATAGGATTTGGCAATGTCCAACGGCGAGGAGgtatgtatggttaatttcttttgtggtttttttgtgttcttacactcaacgatgtaatatttctttgtgtccagGAGGAGAAGATAC
CTTGATACCAAAAATGTAGGACAGAGGGTGGGCTTATTGATGATGGTTGTTGCTGCTATAATGTTCATTGGTTTACGATGATTCCATAAGAGTTGGCAATGGCCAAGGGTGAGGAGTGAGTGATTGTAGCTGCAGAGTCTAAGAAGGCCAAGTTGAGAAGATACCTTGATACCAAAAATGTAGGACAGAGGGTGGTAGGG
CTTATTGATGATGGTTGTTGCTGCTATAATGTTCATTGGTTTACGATGATTCCATAAGAGTTGGCAATGGCCAAGGGTGAGGAGTGAGTGATT