sp|Q8RWB1|SRL1_ARATH ----> Pre-mRNA splicing factor SR-like 1
Intron 1 GTTAGTATCA ... GCTGTAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.5 | 138 | 56.5 | 55 |
| A2 | 35.47 | 111 | 46.7 | 61 |
| A3 | 39.02 | 100 | 37.3 | 64 |
| A4 | 36.6 | 97 | 54 | 56 |
| A5 | 30 | 42 | 10.8 | 18 |
| A6 | 32.39 | 48 | 11.7 | 23 |
| A7 | 33.08 | 261 | 50.2 | 129 |
| A8 | 39.42 | 229 | 52.7 | 149 |
| A9 | 33.76 | 257 | 54.2 | 131 |
| A10 | 31.98 | 285 | 58.7 | 134 |
>TRINITY_DN132447_c2_g1_i21 from sample A1 / Example spliced isoformAGAAAATCAAACAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCG
CGTTCTTCGCATGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAA
ACTGGTGTTGATATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTT
TGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTG
AAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGG
CCAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCAC
CACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGG
GAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGA
TTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGC
GTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGG
AGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGG
TGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGAC
CCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGC
>TRINITY_DN132447_c2_g1_i23 from sample A1 / Example unspliced isoform:GGTATCAACATATTTCGGTGACATATATTTTGGATATATCTGTAGCCATTAATTTATGCCACTTTGCAGGTTTAGATTTTTGTAATTTGTTGAGGGAGAATCCATTGTTTTTGCAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAA
GGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACTTGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAG
GTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCA
TGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGgttagta
tcataaccttaaaacattatcgttccaaggaagattgagcttgtgttgtggatgtctgatgcacttggttaaaagcttatttttttcaaaatagtctcaatgtactttagccttgtcaagtacttcattataatccttctcataggacgatgccataaattacctttgtttgcagcttgagaaagctgccagtttaaagt
ataaattctttctttggttttatatatggtgcaattccatttcaagattggagctttagagagtacattcagtcatttaatatgtaatcttggtgcaaagattttggatgtcagtttcattgtctttctatttcttgaccgctcatggttgttcatgcgagccttgagcatggggtcatcctctggaggtgttattgaaa
gagaaggcgagcagatctttatcagcatcgctgtaaaagTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAA
AGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGG
AACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGAT
TATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGA
TTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCA
GTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATG
AACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAA
TTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGC
Intron 2 GTATCAACAT ... GTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.23 | 87.5 | 31 | 8 |
| A2 | 17.27 | 69.5 | 24 | 5 |
| A3 | 17.42 | 78.3 | 20 | 13 |
| A4 | 20.95 | 79.3 | 30 | 12 |
| A5 | 24.21 | 42.3 | 21 | 6 |
| A6 | 8.45 | 16.3 | 3 | 0 |
| A7 | 11.19 | 67.5 | 12 | 5 |
| A8 | 19.81 | 40.5 | 15 | 5 |
| A9 | 12.65 | 89.8 | 22 | 4 |
| A10 | 13.9 | 105.3 | 24 | 10 |
>TRINITY_DN108906_c0_g1_i3 from sample A3 / Example spliced isoformCAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCA
TGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGA
TATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAG
GTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCA
TGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGTACTATT
TTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCT
TCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAG
GGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAAGG
AACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACA
>TRINITY_DN108906_c0_g1_i19 from sample A3 / Example unspliced isoform:CAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCA
TGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGA
TATTGATGCAATGTACATGCATCTTAAAGgtatcaacatatttcggtgacatatattttggatatatctgtagccattaatttatgccactttgcaggtttagatttttgtaatttgttgagggagaatccattgtttttgcagTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTG
CTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACTTGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGG
GAAGCCTATTGATTCTTTGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTA
CCATGAAGTTGACAGTGAAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTT
CGTGATTTACTTCTAGGCCAGGTTAGTATCATAACCTTAAAACATTATCGTTCCAAGGAAGATTGAGCTTGTGTTGTGGATGTCTGATGCACTTGGTTAAAAGCTTATTTTTTTCAAAATAGTCTCAATGTACTTTAGCCTTGTCAAGTACTTCATTATAATCCTTCTCATAGGACGATGCCATAAATTACCTTTGTTTG
CAGCTTGAGAAAGCTGCCAGTTTAAAGTATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGGTGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATG
GGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATG
ACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAG
GACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAA
GGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAG
AAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAAT
GCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGG
AACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGG
GGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTT
GTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTTGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTATCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAATTCCTAGATATATATTTTAATCATTACCTGGG
Intron 3 GTTAGTATCA ... CTGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.73 | 138 | 58.3 | 53 |
| A2 | 29.07 | 111 | 48 | 43 |
| A3 | 27.54 | 100 | 38 | 38 |
| A4 | 31.45 | 97 | 55 | 34 |
| A5 | 29.41 | 42 | 11 | 24 |
| A6 | 22.58 | 48 | 12 | 16 |
| A7 | 20.91 | 261 | 52 | 86 |
| A8 | 26.84 | 229 | 54 | 114 |
| A9 | 21.41 | 257 | 56 | 84 |
| A10 | 21.27 | 285 | 61 | 93 |
>TRINITY_DN37104_c0_g1_i1 from sample A8 / Example spliced isoformACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCATGTCTG
AGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGATATTGA
TGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACT
TGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAA
GTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTG
GTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAG
TGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTAT
CATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGA
TAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGG
ACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTAT
GGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTA
GTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTC
ATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTT
GTGCACATCAGATCTAATTACATTTAGGAAGTTGTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTAGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTATCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAG
>TRINITY_DN37104_c0_g1_i6 from sample A8 / Example unspliced isoform:ACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCATGTCTG
AGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGATATTGA
TGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAGGTTCTC
TGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCATGGGCT
TCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGgttagtatcataa
ccttaaaacattatcgttccaaggaagattgagcttgtgttgtggatgtctgatgcacttggttaaaagcttatttttttcaaaatagtctcaatgtactttagccttgtcaagtacttcattataatccttctcataggacgatgccataaattacctttgtttgcagcttgagaaagctgccagtttaaagtataaat
tctttctttggttttatatatggtgcaattccatttcaagattggagctttagagagtacattcagtcatttaatatgtaatcttggtgcaaagattttggatgtcagtttcattgtctttctatttcttgaccgctcatggttgttcatgcgagccttgagcatggggtcatcctctggaggtgttattgaaagagaag
gcgagcagatctttatcagcatcgctgtaaaaggtttgtaatgttgatcttgaagaagtgatacatggtccaaacatgttatgtgaaccaatctgctatgttagatttttgtgcttactattttgaaagcctgaatgcttgatattacctactaatgatcaaatttgtttccataaaagtttatattcttttgtgatata
aatgttttccttttctcttcctgtttagttttctttataaacaagaaaatgcatgccctaatctgtagttgagattcttctcatgtcatagtttgaatcaaacttcatggtcaaggcacataattttgattttctacaaacatgtctagatgaagatacatgttttttattctgggctgcagcaagtccagcaacttggt
ttgcttacaggcacagtgtgcatggttactggatatcagaaaaagtcatctctcttgtgtttttgtaaggttttttaatttctggctagatatagactacccttattcgaatatatatatagaatcattgtcaagttttactggtgataaactgttctccataattgcacaaggaatgtgattttattatgtttatcttt
caccggtttttacgttgaaataccattgctaagtctcccttacggttaacctctcctgtgataactggaataactgattattttgtatgaattaacaaagcttgttctattggagtttatttgtttttttttcattaatttggggggaggggttggtgttaatgtgttttcaaagcagcgttgtctgttttcatttgtag
aaggatcatgtgatttattgactgcagagtttatctttataatggggatgttgtgaataatttgttgataaagcttgctaatgcagtctgactcaatctgtgtgcagTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCAT
GCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGA
TCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGG
ATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGA
GGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGA
TCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCA
GAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGA
TTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATT
TCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTTGTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTAGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTATCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAG
Intron 4 ATGTGGGAAG ... CTTCTCAAAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.79 | 60 | 127 | 194 |
| A2 | 75.56 | 35 | 100.5 | 116 |
| A3 | 80.69 | 22 | 102 | 82 |
| A4 | 81.39 | 24 | 101 | 109 |
| A5 | 72.13 | 20 | 55.5 | 48 |
| A6 | 80.6 | 6 | 25 | 25 |
| A7 | 65.22 | 70 | 110.5 | 152 |
| A8 | 64.94 | 44 | 48 | 115 |
| A9 | 74.47 | 36 | 111 | 99 |
| A10 | 75.04 | 40 | 118.5 | 122 |
>TRINITY_DN37104_c0_g1_i5 from sample A8 / Example spliced isoformACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCATGTCTG
AGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGATATTGA
TGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACT
TGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAA
TGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGGTTAGTATCATAACCTTAAAACATTATCGTTCCAAGGAAGATTGAGCTTGTGTTGTGGATGTCTGATGCACTTGGTTAAAAGCTTATTTTTTTCAAAATAGTCTCAATGTACTTTAGCCTTGTCAAGTACTTCATTATAATCCTTCTC
ATAGGACGATGCCATAAATTACCTTTGTTTGCAGCTTGAGAAAGCTGCCAGTTTAAAGTATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGGTGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCG
CTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGGTTTGTAATGTTGATCTTGAAGAAGTGATACATGGTCCAAACATGTTATGTGAACCAATCTGCTATGTTAGATTTTTGTGCTTACTATTTTGAAAGCCTGAA
TGCTTGATATTACCTACTAATGATCAAATTTGTTTCCATAAAAGTTTATATTCTTTTGTGATATAAATGTTTTCCTTTTCTCTTCCTGTTTAGTTTTCTTTATAAACAAGAAAATGCATGCCCTAATCTGTAGTTGAGATTCTTCTCATGTCATAGTTTGAATCAAACTTCATGGTCAAGGCACATAATTTTGATTTTCT
ACAAACATGTCTAGATGAAGATACATGTTTTTTATTCTGGGCTGCAGCAAGTCCAGCAACTTGGTTTGCTTACAGGCACAGTGTGCATGGTTACTGGATATCAGAAAAAGTCATCTCTCTTGTGTTTTTGTAAGGTTTTTTAATTTCTGGCTAGATATAGACTACCCTTATTCGAATATATATATAGAATCATTGTCAAG
TTTTACTGGTGATAAACTGTTCTCCATAATTGCACAAGGAATGTGATTTTATTATGTTTATCTTTCACCGGTTTTTACGTTGAAATACCATTGCTAAGTCTCCCTTACGGTTAACCTCTCCTGTGATAACTGGAATAACTGATTATTTTGTATGAATTAACAAAGCTTGTTCTATTGGAGTTTATTTGTTTTTTTTTCAT
TAATTTGGGGGGAGGGGTTGGTGTTAATGTGTTTTCAAAGCAGCGTTGTCTGTTTTCATTTGTAGAAGGATCATGTGATTTATTGACTGCAGAGTTTATCTTTATAATGGGGATGTTGTGAATAATTTGTTGATAAAGCTTGCTAATGCAGTCTGACTCAATCTGTGTGCAGTACTATTTTGATACACTTTTTCCTCGCA
TACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCT
GTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGA
CAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTC
GCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAA
AGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAA
TAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATT
ATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAA
TTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTTGTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTAGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTA
TCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAG
>TRINITY_DN37104_c0_g1_i4 from sample A8 / Example unspliced isoform:ACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCATGTCTG
AGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGATATTGA
TGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACT
TGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACatgtgggaagcctattgattctttgcttgagaaggttctctgcatgaacatcctgtcttcagattacttcaaggaactatacaggctgaagacctaccatgaagttattgatgagatctataatcaa
gttgatcatgtagaaccatggatgacagggaattgtaggggtccatctacagcattttgtcttctttacaagtattttaccatgaagttgacagtgaagcaaatgcatgggcttctcaaacATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTG
GTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGGTTAGTATCATAACCTTAAAACATTATCGTTCCAAGGAAGATTGAGCTTGTGTTGTGGATGTCTGATGCACTTGGTTAAAAGCTTATTTTTTTCAAAATA
GTCTCAATGTACTTTAGCCTTGTCAAGTACTTCATTATAATCCTTCTCATAGGACGATGCCATAAATTACCTTTGTTTGCAGCTTGAGAAAGCTGCCAGTTTAAAGTATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGG
TGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGGTTTGTAATGTTGATCTTGAAGAAGTGATACATGGTCCAAACATGTTATGTGAA
CCAATCTGCTATGTTAGATTTTTGTGCTTACTATTTTGAAAGCCTGAATGCTTGATATTACCTACTAATGATCAAATTTGTTTCCATAAAAGTTTATATTCTTTTGTGATATAAATGTTTTCCTTTTCTCTTCCTGTTTAGTTTTCTTTATAAACAAGAAAATGCATGCCCTAATCTGTAGTTGAGATTCTTCTCATGTC
ATAGTTTGAATCAAACTTCATGGTCAAGGCACATAATTTTGATTTTCTACAAACATGTCTAGATGAAGATACATGTTTTTTATTCTGGGCTGCAGCAAGTCCAGCAACTTGGTTTGCTTACAGGCACAGTGTGCATGGTTACTGGATATCAGAAAAAGTCATCTCTCTTGTGTTTTTGTAAGGTTTTTTAATTTCTGGCT
AGATATAGACTACCCTTATTCGAATATATATATAGAATCATTGTCAAGTTTTACTGGTGATAAACTGTTCTCCATAATTGCACAAGGAATGTGATTTTATTATGTTTATCTTTCACCGGTTTTTACGTTGAAATACCATTGCTAAGTCTCCCTTACGGTTAACCTCTCCTGTGATAACTGGAATAACTGATTATTTTGTA
TGAATTAACAAAGCTTGTTCTATTGGAGTTTATTTGTTTTTTTTTCATTAATTTGGGGGGAGGGGTTGGTGTTAATGTGTTTTCAAAGCAGCGTTGTCTGTTTTCATTTGTAGAAGGATCATGTGATTTATTGACTGCAGAGTTTATCTTTATAATGGGGATGTTGTGAATAATTTGTTGATAAAGCTTGCTAATGCAGT
CTGACTCAATCTGTGTGCAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCA
TTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAG
CAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACA
GGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGT
CGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCT
CGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGT
CATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAA
CCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTTGTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTA
GCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTATCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAG
Intron 5 GTTTGTAATG ... CTGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.04 | 55.1 | 10 | 53 |
| A2 | 41.45 | 60.8 | 2 | 43 |
| A3 | 37.48 | 63.4 | 13 | 38 |
| A4 | 37.78 | 56 | 10 | 34 |
| A5 | 57.23 | 17.9 | 3 | 24 |
| A6 | 41.1 | 22.9 | 1 | 16 |
| A7 | 40.08 | 128.6 | 14 | 86 |
| A8 | 43.42 | 148.6 | 7 | 114 |
| A9 | 39.09 | 130.9 | 7 | 84 |
| A10 | 41.02 | 133.8 | 4 | 93 |
>TRINITY_DN37104_c0_g1_i8 from sample A8 / Example spliced isoformACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCATGTCTG
AGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGATATTGA
TGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACT
TGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAA
GTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTG
GTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGGTTAGTATCATAACCTTAAAACATTATCGTTCCAAGGAAGATTGAGCTTGTGTTGTGGATGTCTGATGCACTTGGTTAAAAGCTTATTTTTTTCAAAATA
GTCTCAATGTACTTTAGCCTTGTCAAGTACTTCATTATAATCCTTCTCATAGGACGATGCCATAAATTACCTTTGTTTGCAGCTTGAGAAAGCTGCCAGTTTAAAGTATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGG
TGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATT
ACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAG
GAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGA
GGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGG
GAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGA
GAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTC
ACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCAT
GTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGCTAAATGGT
CTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTTGTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTAGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTATCATTTTCACATTTGACTTGGTGAAA
CTATTATATATAGCAGAG
>TRINITY_DN37104_c0_g1_i5 from sample A8 / Example unspliced isoform:ACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCATGTCTG
AGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGATATTGA
TGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACT
TGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAA
TGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGGTTAGTATCATAACCTTAAAACATTATCGTTCCAAGGAAGATTGAGCTTGTGTTGTGGATGTCTGATGCACTTGGTTAAAAGCTTATTTTTTTCAAAATAGTCTCAATGTACTTTAGCCTTGTCAAGTACTTCATTATAATCCTTCTC
ATAGGACGATGCCATAAATTACCTTTGTTTGCAGCTTGAGAAAGCTGCCAGTTTAAAGTATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGGTGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCG
CTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGgtttgtaatgttgatcttgaagaagtgatacatggtccaaacatgttatgtgaaccaatctgctatgttagatttttgtgcttactattttgaaagcctgaa
tgcttgatattacctactaatgatcaaatttgtttccataaaagtttatattcttttgtgatataaatgttttccttttctcttcctgtttagttttctttataaacaagaaaatgcatgccctaatctgtagttgagattcttctcatgtcatagtttgaatcaaacttcatggtcaaggcacataattttgattttct
acaaacatgtctagatgaagatacatgttttttattctgggctgcagcaagtccagcaacttggtttgcttacaggcacagtgtgcatggttactggatatcagaaaaagtcatctctcttgtgtttttgtaaggttttttaatttctggctagatatagactacccttattcgaatatatatatagaatcattgtcaag
ttttactggtgataaactgttctccataattgcacaaggaatgtgattttattatgtttatctttcaccggtttttacgttgaaataccattgctaagtctcccttacggttaacctctcctgtgataactggaataactgattattttgtatgaattaacaaagcttgttctattggagtttatttgtttttttttcat
taatttggggggaggggttggtgttaatgtgttttcaaagcagcgttgtctgttttcatttgtagaaggatcatgtgatttattgactgcagagtttatctttataatggggatgttgtgaataatttgttgataaagcttgctaatgcagtctgactcaatctgtgtgcagTACTATTTTGATACACTTTTTCCTCGCA
TACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCT
GTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGA
CAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTC
GCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAA
AGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAA
TAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATT
ATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAA
TTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTTGTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTAGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTA
TCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAG
Intron 6 GTTAGTATCA ... TTCATGCGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.06 | 47 | 58 | 25.7 |
| A2 | 50.09 | 37 | 48 | 26.7 |
| A3 | 53.07 | 32 | 38 | 34.7 |
| A4 | 53.72 | 34 | 55 | 24 |
| A5 | 56.09 | 6 | 11 | 4.3 |
| A6 | 47.62 | 12 | 12 | 10 |
| A7 | 42.75 | 59 | 52 | 36.3 |
| A8 | 48.82 | 44 | 54 | 30.3 |
| A9 | 42.93 | 60 | 56 | 34.7 |
| A10 | 48.86 | 46 | 61 | 27 |
>TRINITY_DN132447_c2_g1_i20 from sample A1 / Example spliced isoformAGAAAATCAAACAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCG
CGTTCTTCGCATGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAA
ACTGGTGTTGATATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTT
TGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTG
AAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGG
CCAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATC
GCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAG
AGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAG
AAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGA
GGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAA
AAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTA
AAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAG
TACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGC
>TRINITY_DN132447_c2_g1_i8 from sample A1 / Example unspliced isoform:AGAAAATCAAACAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCG
CGTTCTTCGCATGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAA
ACTGGTGTTGATATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTT
TGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTG
AAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGG
CCAGgttagtatcataaccttaaaacattatcgttccaaggaagattgagcttgtgttgtggatgtctgatgcacttggttaaaagcttatttttttcaaaatagtctcaatgtactttagccttgtcaagtacttcattataatccttctcataggacgatgccataaattacctttgtttgcagcttgagaaagctgc
cagtttaaagtataaattctttctttggttttatatatggtgcaattccatttcaagattggagctttagagagtacattcagtcatttaatatgtaatcttggtgcaaagattttggatgtcagtttcattgtctttctatttcttgaccgctcatggttgttcatgcgagCCTTGAGCATGGGGTCATCCTCTGGAGG
TGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGGTTTGTAATGTTGATCTTGAAGAAGTGATACATGGTCCAAACATGTTATGTGAACCAATCTGCTATGTTAGATTTTTGTGCTTACTATTTTGAAAGCCTGAATGCTTGATATTACCTACTAATGATCAAATTTGTTTCCATT
Intron 7 GTTAGTATCA ... TGGTGCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.71 | 41.3 | 56.6 | 28 |
| A2 | 51.63 | 35.7 | 46.8 | 21 |
| A3 | 53.44 | 28.4 | 37.4 | 24 |
| A4 | 61.9 | 28.2 | 54 | 30 |
| A5 | 54.74 | 8.1 | 10.8 | 6 |
| A6 | 63.06 | 6.8 | 11.7 | 10 |
| A7 | 51.4 | 45.2 | 50.3 | 33 |
| A8 | 58.42 | 34.5 | 52.8 | 34 |
| A9 | 48.15 | 50.4 | 54.3 | 30 |
| A10 | 48.32 | 56.6 | 58.8 | 32 |
>TRINITY_DN132447_c2_g1_i7 from sample A1 / Example spliced isoformAGAAAATCAAACAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCG
CGTTCTTCGCATGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAA
ACTGGTGTTGATATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTT
TGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTG
AAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGG
CCAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACG
GCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAA
TGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGG
ACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAA
AGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAA
AAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACA
ACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTT
TTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGC
>TRINITY_DN132447_c2_g1_i8 from sample A1 / Example unspliced isoform:AGAAAATCAAACAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCG
CGTTCTTCGCATGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAA
ACTGGTGTTGATATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTT
TGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTG
AAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGG
CCAGgttagtatcataaccttaaaacattatcgttccaaggaagattgagcttgtgttgtggatgtctgatgcacttggttaaaagcttatttttttcaaaatagtctcaatgtactttagccttgtcaagtacttcattataatccttctcataggacgatgccataaattacctttgtttgcagcttgagaaagctgc
cagtttaaagtataaattctttctttggttttatatatggtgcaattccatttcaagattggagctttagagagtacattcagtcatttaatatgtaatcttggtgcaaagATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGG
TGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGGTTTGTAATGTTGATCTTGAAGAAGTGATACATGGTCCAAACATGTTATGTGAACCAATCTGCTATGTTAGATTTTTGTGCTTACTATTTTGAAAGCCTGAATGCTTGATATTACCTACTAATGATCAAATTTGTTTCCATT
Intron 8 GTTAGTATCA ... TGGATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.25 | 48 | 58 | 28 |
| A2 | 46.1 | 38 | 48 | 17 |
| A3 | 50.79 | 31 | 38 | 26 |
| A4 | 56.94 | 31 | 55 | 27 |
| A5 | 48.39 | 8 | 11 | 4 |
| A6 | 55 | 9 | 12 | 10 |
| A7 | 41.36 | 56 | 52 | 27 |
| A8 | 53.85 | 36 | 54 | 30 |
| A9 | 41.67 | 56 | 56 | 24 |
| A10 | 42.86 | 62 | 61 | 32 |
>TRINITY_DN108906_c0_g1_i8 from sample A3 / Example spliced isoformCAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCA
TGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGA
TATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTT
AGCACTTGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTAT
AATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATG
GGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGC
GAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTT
TATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGGAACATGAC
AGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGATTATGATAG
GGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGA
GGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGAT
GTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATGAACCAAGT
TTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAATTGTGTTA
GGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTTGTATTGTTGGTTAGTAAAATTACCACTGTATTTCTC
TTGCTAAATTTGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTATCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAATTCCTAGATATATATTTTAATCATTACCTGGG
>TRINITY_DN108906_c0_g1_i19 from sample A3 / Example unspliced isoform:CAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCGCGTTCTTCGCA
TGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAAACTGGTGTTGA
TATTGATGCAATGTACATGCATCTTAAAGGTATCAACATATTTCGGTGACATATATTTTGGATATATCTGTAGCCATTAATTTATGCCACTTTGCAGGTTTAGATTTTTGTAATTTGTTGAGGGAGAATCCATTGTTTTTGCAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTG
CTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACTTGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGG
GAAGCCTATTGATTCTTTGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTA
CCATGAAGTTGACAGTGAAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTT
CGTGATTTACTTCTAGGCCAGgttagtatcataaccttaaaacattatcgttccaaggaagattgagcttgtgttgtggatgtctgatgcacttggttaaaagcttatttttttcaaaatagtctcaatgtactttagccttgtcaagtacttcattataatccttctcataggacgatgccataaattacctttgtttg
cagcttgagaaagctgccagtttaaagtataaattctttctttggttttatatatggtgcaattccatttcaagattggagctttagagagtacattcagtcatttaatatgtaatcttggtgcaaagattttggatgtcagTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATG
GGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATG
ACACTGCACGGAGACCACCGTCAGTAAAAGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAG
GACAGGGAAGCCAAAAACAGAGACAAGGAACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAA
GGAACAAGACAGGGAAAAGAGCAGGGATTATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAG
AAAATGAGAGAAGATCTCGTGATAGGGATTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAAT
GCTCTTTCCCATCCAAAGGATTCAAGCAGTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGG
AACATCTTATAGATTTGATTTGGTAATGAACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGG
GGTACTATCTGGTTGCATTGATGAATAATTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGCTAAATGGTCTGTTAACGAAAACCTGTCTATAAACTCAATGAGTGATTTCCAGTTGTGCACATCAGATCTAATTACATTTAGGAAGTT
GTATTGTTGGTTAGTAAAATTACCACTGTATTTCTCTTGCTAAATTTGCGTTTAATCATTACCTGGTAGGTTTTCCAAAATATTAAGATTCATTATCATTTTCACATTTGACTTGGTGAAACTATTATATATAGCAGAATTCCTAGATATATATTTTAATCATTACCTGGG
Intron 9 GTTAGTATCA ... TTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.81 | 66 | 56.6 | 31 |
| A2 | 40.08 | 58 | 46.8 | 31 |
| A3 | 47.5 | 30 | 37.4 | 17 |
| A4 | 42.81 | 48 | 54 | 18 |
| A5 | 39.82 | 18 | 10.8 | 13 |
| A6 | 43.85 | 19 | 11.7 | 18 |
| A7 | 40.29 | 77 | 50.3 | 54 |
| A8 | 45.24 | 70 | 52.8 | 63 |
| A9 | 39.06 | 85 | 54.3 | 55 |
| A10 | 41.37 | 76 | 58.8 | 49 |
>TRINITY_DN132447_c2_g1_i13 from sample A1 / Example spliced isoformAGAAAATCAAACAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCG
CGTTCTTCGCATGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAA
ACTGGTGTTGATATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTT
TGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTG
AAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGG
CCAGCTTGAGAAAGCTGCCAGTTTAAAGTATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGGTGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCAT
GGGGTCATCCTCTGGAGGTGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGGTTTGTAATGTTGATCTTGAAGAAGTGATACATGGTCCAAACATGTTATGTGAACCAATCTGCTATGTTAGATTTTTGTGCTTACTATTTTGAAAGCCTGAATGCTTGATATTACCTACTAATGATCAAATT
TGTTTCCATT
>TRINITY_DN132447_c2_g1_i23 from sample A1 / Example unspliced isoform:GGTATCAACATATTTCGGTGACATATATTTTGGATATATCTGTAGCCATTAATTTATGCCACTTTGCAGGTTTAGATTTTTGTAATTTGTTGAGGGAGAATCCATTGTTTTTGCAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAA
GGGTCAAGGGAGAGAGAGGTTCAGTACTCTTTACATGCTACCTTGCTCCAATTCAAAGAAGCCCCTGCTGCATTTTATTTGTCTTTTAGCACTTGTGCTTCACAAATAAGGACCTTAAACTTTGTGTTCAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAG
GTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCA
TGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGgttagta
tcataaccttaaaacattatcgttccaaggaagattgagcttgtgttgtggatgtctgatgcacttggttaaaagcttatttttttcaaaatagtctcaatgtactttagccttgtcaagtacttcattataatccttctcataggacgatgccataaattacctttgtttgcagCTTGAGAAAGCTGCCAGTTTAAAGT
ATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGGTGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAA
GAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAA
AGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGG
AACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGAT
TATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGA
TTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCA
GTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATG
AACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAA
TTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGC
Intron 10 GTTCAGTACT ... TTGTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.79 | 93.5 | 57.7 | 94 |
| A2 | 43.24 | 70.5 | 43.4 | 64 |
| A3 | 44.7 | 83.5 | 64.1 | 71 |
| A4 | 40.9 | 84.6 | 39.1 | 78 |
| A5 | 35.12 | 28.7 | 12.1 | 19 |
| A6 | 38.71 | 14.9 | 8.8 | 10 |
| A7 | 46.29 | 78.4 | 51.2 | 84 |
| A8 | 42.11 | 34.7 | 17.4 | 33 |
| A9 | 46.2 | 80.4 | 54.2 | 84 |
| A10 | 38.65 | 101.1 | 45.6 | 82 |
>TRINITY_DN132447_c2_g1_i8 from sample A1 / Example spliced isoformAGAAAATCAAACAATAAACCATATTCATAATCTCACCTTTTCGCCTTTCAAAAACACATATCATTCCCTTTTAAAACGGATTTGGGAGATGTTCGGCCACTCAAACCCTCGTTGTCAGGGTTTCAACTTCATTAGCTCTCATTAGCCGTACCGAACAGCTCCAAATTTCCGGATGTTTCCGTCGATCGGACTTAAATTCG
CGTTCTTCGCATGTCTGAGATTCACGGCGCCTGTAAATTTGCTCCAGGCTTGATAGTTGAAAGTGGAATCACATGGGCTATGCTGACCTCAATTTTATCTGAAGTGGTTTCCGTATTTGATCTTGACCACTGCACAGATATATTTAGACATTAGTGAAAATTGTGTCACCAGAACAACTGTTCAGAATATATTACTCAAA
ACTGGTGTTGATATTGATGCAATGTACATGCATCTTAAAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAAGGGTCAAGGGAGAGAGAGGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTT
TGCTTGAGAAGGTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTG
AAGCAAATGCATGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGG
CCAGGTTAGTATCATAACCTTAAAACATTATCGTTCCAAGGAAGATTGAGCTTGTGTTGTGGATGTCTGATGCACTTGGTTAAAAGCTTATTTTTTTCAAAATAGTCTCAATGTACTTTAGCCTTGTCAAGTACTTCATTATAATCCTTCTCATAGGACGATGCCATAAATTACCTTTGTTTGCAGCTTGAGAAAGCTGC
CAGTTTAAAGTATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGGTGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGG
TGTTATTGAAAGAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGGTTTGTAATGTTGATCTTGAAGAAGTGATACATGGTCCAAACATGTTATGTGAACCAATCTGCTATGTTAGATTTTTGTGCTTACTATTTTGAAAGCCTGAATGCTTGATATTACCTACTAATGATCAAATTTGTTTCCATT
>TRINITY_DN132447_c2_g1_i23 from sample A1 / Example unspliced isoform:GGTATCAACATATTTCGGTGACATATATTTTGGATATATCTGTAGCCATTAATTTATGCCACTTTGCAGGTTTAGATTTTTGTAATTTGTTGAGGGAGAATCCATTGTTTTTGCAGTGTTCAAATTAATAGAAAGTTTTAGAGCATGCGGGCAGAAGAATTTTCTGAGCTTGCTAAGAGCACAGTAAAGATCATCTAGAA
GGGTCAAGGGAGAGAGAGgttcagtactctttacatgctaccttgctccaattcaaagaagcccctgctgcattttatttgtcttttagcacttgtgcttcacaaataaggaccttaaactttgtgttcagGGAAGTTTATTAGTGGAGAATATGGAAGTACAAACATGTGGGAAGCCTATTGATTCTTTGCTTGAGAAG
GTTCTCTGCATGAACATCCTGTCTTCAGATTACTTCAAGGAACTATACAGGCTGAAGACCTACCATGAAGTTATTGATGAGATCTATAATCAAGTTGATCATGTAGAACCATGGATGACAGGGAATTGTAGGGGTCCATCTACAGCATTTTGTCTTCTTTACAAGTATTTTACCATGAAGTTGACAGTGAAGCAAATGCA
TGGGCTTCTCAAACATGAGGACTCTCCATACATAAGATGTGTTGGTTTCCTATACCTGCGTTATGTTGCAGATCCGAAGACATTATGGGGTTGGTTTGAGCCTTATGTTAAAGATGACGAGGAATTTTCTCCAGGATCAAATGGAAGGATGACCACAATGGGTGTTTATGTTCGTGATTTACTTCTAGGCCAGGTTAGTA
TCATAACCTTAAAACATTATCGTTCCAAGGAAGATTGAGCTTGTGTTGTGGATGTCTGATGCACTTGGTTAAAAGCTTATTTTTTTCAAAATAGTCTCAATGTACTTTAGCCTTGTCAAGTACTTCATTATAATCCTTCTCATAGGACGATGCCATAAATTACCTTTGTTTGCAGCTTGAGAAAGCTGCCAGTTTAAAGT
ATAAATTCTTTCTTTGGTTTTATATATGGTGCAATTCCATTTCAAGATTGGAGCTTTAGAGAGTACATTCAGTCATTTAATATGTAATCTTGGTGCAAAGATTTTGGATGTCAGTTTCATTGTCTTTCTATTTCTTGACCGCTCATGGTTGTTCATGCGAGCCTTGAGCATGGGGTCATCCTCTGGAGGTGTTATTGAAA
GAGAAGGCGAGCAGATCTTTATCAGCATCGCTGTAAAAGTACTATTTTGATACACTTTTTCCTCGCATACCAGTACCTATCATGCGTCAAATTACGGCTCATTTGGAACGAATGAATCTTCCTACTCGGCATGCAGGAGTGACTGGTGATACTAATCGCCATGGATCAGATGACACTGCACGGAGACCACCGTCAGTAAA
AGCTGCTTTATCAGTATCATTTGGCCAGCGCGCACCACATCGTGCTTCCACTCGAGATTCCTCACCTGTGCGTCGAGCGCTGCCGCGTGACAGGAATGGCAGTGATGCTGTTCCAAAATCAGCTAGTGGTGATCGTTATCATGATGCAGACAGGGAGAGGGATAGAGACCAGGACAGGGAAGCCAAAAACAGAGACAAGG
AACATGACAGGGACAGGAGCAGGGACTATGACAGGGAGAGGAGCAGGGATCGTGCTAGGGATCATGACAAGGAGAGGAGCAGGGATCCTGCGAGGGACCATGATAGGGAGAGGAGTAGAGATTATGATAGGGATCGTGATAGAGATGAAAGAAGCAGAAAAAGAAGAGACAAGGAACAAGACAGGGAAAAGAGCAGGGAT
TATGATAGGGAACGTGACAGGGAAAGAAGCAGAGATTATGACAGGGAGAGGAACAGGGATTATACTCGCATACGTGACAGAGAACATGATAGGGAAAGGAGTAGGGATTATGATCGAGATGGCAAAGATAGAGGCAGGGACAGGGACACTGATAGGAGGTTAAAGGAAAGAGAAAATGAGAGAAGATCTCGTGATAGGGA
TTCTTGGAGGAGTAGAAGTCGTAGTCCACGAAGGCGTCAGAGGAGTGTCAGTGCTGATCGGCAGCAAAGTCCTTTGAAGGAAACTCCTAAAGAGAAAAGCTCTTTACCGAATAATCTTGCCAAGCTGCGTGATCTGTATGGGGATTCAACTGCTAAAAAAGAGGACAAGAATGCTCTTTCCCATCCAAAGGATTCAAGCA
GTGAAGATGTGATCCGCCTCGGTGGTACCACATGGAGGTAGCTGTGAGAAAGGGATAGGAATGACAATAAATAAACTATATATCAAGAATGTCACAACAGGTTTCTGCTGTCATTCATCAGTCTTGGCTCCAGAACGTAGTTGTAGCTTGATCTGTAAAATTGAAGGGTGGGAACATCTTATAGATTTGATTTGGTAATG
AACCAAGTTTGTGCACAGTCATGGAGCAAGATTGGTGTTCCATTAAGAATTTTTTGAGTCATTCATTATGCCAATCTTCCTGGAGTCTCCCATGTTTTTCAAAATTCCAGGTTTTCAATTTTCCTGGATGGATTTGTTCATATTTTACATTTCCAAGTACATTAAAGAATGGGGTACTATCTGGTTGCATTGATGAATAA
TTGTGTTAGGTTCTTGTAACCATTTCATAGTAGACCCTCTTATTTTAATGGGAGAGTGCAAGTCTAATTGTCTTTTAGTTCTGGC