NA ----> NA

Intron 1 GTGAGGATGT ... TACATTGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	82.61	22	105	104
A2	81.58	14	64	60
A3	72.86	27	63	82
A4	77.27	15	47	55
A5	79.31	9	39	30
A6	39.37	278	162	199
A7	40.41	202	156	118
A8	43.12	213	167	156
A9	41.23	211	139	157
A10	44.31	142	97	129

>TRINITY_DN42918_c0_g2_i13 from sample A9 / Example spliced isoform

CATAAATCGCTTAATCCCATCCGATTTCCTCAGGGATGAGTTGCTGGAAACATGATCGAAAGGCAGTCTCTTCGCCTTGGACAGTTTTGGACGAGCCGACAACTCCGTGAGTCCAGGCATTTGCTTCATGCCAACGATGAAGGCTATGGGCTATGAGAGCTGAAGACCTGATATTCTAATCAGCTTACACTGAAGGCACT
TACTTTGACGCCATCGATGAAGGCTAAGCCATGAGAGGCACTTTTAACGCTGGGGCTTACATTGAAGGCACTTACTTTGATGCCATGGATGAATGCTAAACTACGAGAGCTGAGGACTTGATATCTTACTAGTTTTGCTTTTATAGCTGGTTTCATTGATTGATTTCTTAATTAGTTGATATTAGTTTTGCTTAAATGAG
TTTCCATACATGACATCATAAATGCATGTTTTCAGTTATGTCTTTCAATAGTTTTATGTCTGATTTCTTAAGGGGACCAAATATTCTATTTGGGTATCAATAAAACTGAGGCATCATCTTTCAATCTTCTTATTTTCAAGAATATTTTTTCTTGTCAATCTATATTTCTTTGAGATTTTGAGATGTGATTTGTACTACAT
ATATCTG

>TRINITY_DN42918_c0_g2_i6 from sample A9 / Example unspliced isoform:

CATAAATCGCTTAATCCCATCCGATTTCCTCAGGGATGAGTTGCTGGAAACATGATCGAAAGGCAGTCTCTTCGCCTTGGACAGTTTTGGACGAGCCGACAACTCCGTGAGTCCAGGCATTTGCTTCATGCCAACGATGAAGGCTATGGGCTATGAGAGCTGAAGACCTGATATTCTAATCAGCTTACACTGAAGGCACT
TACTTTGACGCCATCGATGAAGGCTAAGCCATGAGAGgtgaggatgtgatgatgacttgtggacattaaatttcaattaaattaactttgggtatacatactaaattaacgctggggcttacattgaagGCACTTTTAACGCTGGGGCTTACATTGAAGGCACTTACTTTGATGCCATGGATGAATGCTAAACTACGAGA
GCTGAGGACTTGATATCTTACTAGTTTTGCTTTTATAGCTGGTTTCATTGATTGATTTCTTAATTAGTTGATATTAGTTTTGCTTAAATGAGTTTCCATACATGACATCATAAATGCATGTTTTCAGTTATGTCTTTCAATAGTTTTATGTCTGATTTCTTAAGGGGACCAAATATTCTATTTGGGTATCAATAAAACTG
AGGCATCATCTTTCAATCTTCTTATTTTCAAGAATATTTTTTCTTGTCAATCTATATTTCTTTGAGATTTTGAGATGTGATTTGTACTACATATATCTG

Intron 2 ATTGAAGGCA ... TGGGGCTTAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	93.37	7	115.3	81.3
A2	90.1	5.7	58	45
A3	90.92	7	79.7	60.7
A4	92.94	3.7	52.7	43.7
A5	93.48	2	30.3	27.3
A6	46.24	183.3	166.7	151.7
A7	44.77	116	102.7	86
A8	51.82	116.3	136.7	114
A9	48.84	130.3	137.7	111.7
A10	56.51	79	112.7	92.3

>TRINITY_DN107941_c0_g2_i1 from sample A4 / Example spliced isoform

CTCTTCGCCTTGGACAGTTTTGGACGAGCCGACAACTCCGTGAGTCCAGGCATTTGCTTCATGCCAACGATGAAGGCTATGGGCTATGAGAGCTGAAGACCTGATATTCTAATCAGCTTACACTGAAGGCACTTACTTTGATGCCATCGATGAAGGCTAAGCCATGAGAGGCACTTTTAACGCTGGGGCTTACATTGAAG
GCACTTACTTTGATGCCATGGATGAATGCTAAACTACGAGAGCTGAGGACTTGATATCTTACTAGTTTTGCTTTTATAGCTGGC

>TRINITY_DN107941_c0_g2_i3 from sample A4 / Example unspliced isoform:

CTCTTCGCCTTGGACAGTTTTGGACGAGCCGACAACTCCGTGAGTCCAGGCATTTGCTTCATGCCAACGATGAAGGCTATGGGCTATGAGAGCTGAAGACCTGATATTCTAATCAGCTTACACTGAAGGCACTTACTTTGATGCCATCGATGAAGGCTAAGCCATGAGAGGTGAGGATGTGATGATGACTTGTGGACATT
AAATTTCAATTAAATTAACTTTGGGTATACATACTAAATTAACGCTGGGGCTTACattgaaggcacttttaacgctggggcttacATTGAAGGCACTTACTTTGATGCCATGGATGAATGCTAAACTACGAGAGCTGAGGACTTGATATCTTACTAGTTTTGCTTTTATAGCTGGC

Intron 3 GTAATTAAAC ... TGGGTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80.46	4.8	18.2	21
A2	96.19	0.4	7	11.8
A3	74.03	2	6.4	4.6
A4	88.08	3.4	13.6	24.2
A5	68	0.8	1	2
A6	43.49	14.8	6.2	16.4
A7	66.69	6.8	10	16.6
A8	83.43	4.2	18	22.8
A9	42.86	12	4.8	13
A10	64.3	6.6	8.6	14.2

>TRINITY_DN42943_c2_g1_i7 from sample A6 / Example spliced isoform

ATAAATCGCTTAATCCCATCCGATTTCCTCAGGGATGAGTTGCTGGAAACATGATCGAAAGGCAGTCTCTTCGCCTTGGACAGTTTTGGACGAGCCGACAACTCCGTGAGTCCAGAGCAATTGGGCTTCCTTGAGGGAAGGCACATGAAGCCATTGGGTCTGCGCAGGAGGGATTACACTCTATAAAAATTAATAAATTG
CCCCATCCATCTATAGTAGTATCCCTGTAGTCTATTAGATAATGGTATACAAGCCAATGAATGAACAACGGAGTACCTTGGTTTTGTTTGGTCGGTGATTTGGCTGTACATTGCAATCAGGTCAGGCAACTTACTCAAAATGAGATAGCAGACGTAATTGCGTATACATTTTTATTTGGAAGATGTAGAAATGTAGTTAT
GCAACATTTTTATTTGACTGGGAAATTGGAAGTTGTAGAAATGTAGTCATGCAACTTCTTTATTTGACTGGGAAATAATGCAGACCATTCAATTCTTTTTGGAAATTGTTAGCATATATTTACCTTTTTTTTTCAATTAACTAACAGTGTTTTGGAAATTATCTGTTTGAGTAGTATTAAGTATTAACACAGCGTTTTGG
AAAGTTTATGTTTAAAGTAGTATTGGTCTATGAACATAGGA

>TRINITY_DN42943_c2_g1_i11 from sample A6 / Example unspliced isoform:

ATAAATCGCTTAATCCCATCCGATTTCCTCAGGGATGAGTTGCTGGAAACATGATCGAAAGGCAGTCTCTTCGCCTTGGACAGTTTTGGACGAGCCGACAACTCCGTGAGTCCAGAAATGTAGTCATGCCGTGATATCTCCAGAGCAATTGGGCTTCCTTGAGGGAAGGCACATGAAGCCATTGGGTCTGCGCAGGAGGG
ATTACACTCCATAAAAATTAATAAATTGTCCCATCCATCTATAGTAGgtaattaaacttgatttgtataaagcatatgctaggacttactggttgtatctgatatttttgctgattcatttgggtttcagTATCCCTGTAGTCTATTAGATAATGGTATACAAGCCAATGAATGAACAACGGAGTACCTTGGTTTTGTTT
GGTCGGTGATTTGGCTGTACATTGCAATCAGGTCAGGCAACTTACTCAAAATGAGATAGCAGACGTAATTGCGTATACATTTTTATTTGGAAGATGTAGAAATGTAGTTATGCAACATTTTTATTTGACTGGGAAATTGGAAGTTGTAGAAATGTAGTCATGCAACTTCTTTATTTGACTGGGAAATAATGCAGACCATT
CAATTCTTTTTGGAAATTGTTAGCATATATTTACCTTTTTTTTTCAATTAACTAACAGTGTTTTGGAAATTATCTGTTTGAGTAGTATTAAGTATTAACACAGCGTTTTGGAAAGTTTATGTTTAAAGTAGTATTGGTCTATGAACATAGGA