sp|A2YNP2|TI10B_ORYSI ----> Protein TIFY 10b
Intron 1 GTAAGACGCC ... GCGACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.08 | 24.9 | 8 | 3.2 |
| A2 | 35.36 | 6.5 | 4 | 3.1 |
| A3 | 13.24 | 19.4 | 4.2 | 1.6 |
| A4 | 21.52 | 13.6 | 0 | 7.2 |
| A5 | 23.56 | 3.5 | 2 | 0.1 |
| A6 | 5.95 | 38 | 3 | 1.8 |
| A7 | 15.61 | 37.4 | 8 | 4.8 |
| A8 | 20.59 | 51.1 | 17 | 8.8 |
| A9 | 20.89 | 15.4 | 3 | 4.4 |
| A10 | 14.85 | 28.8 | 6 | 4 |
>TRINITY_DN38157_c0_g1_i5 from sample A6 / Example spliced isoformGGCCAAACAGATCCGGATTCGAGGTATTTTCATGTTCAGACAATTGTCATTTGATTTTTTTTCCGAATCGTCGATACCTGAGCAAGCTTTAATGTTGTGTAAGGCTAACTTTTTTCTTATTGCACTATTTTCAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGG
AATGATGAATGTTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAG
TCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCAC
GCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTA
CAATTGACC
>TRINITY_DN38157_c0_g1_i2 from sample A6 / Example unspliced isoform:GGCCAAACAGATCCGGATTCGAGGTATTTTCATGTTCAGACAATTGTCATTTGATTTTTTTTCCGAATCGTCGATACCTGAGCAAGCTTTAATGTTGTGTAAGGCTAACTTTTTTCTTATTGCACTATTTTCAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGG
AATGATGAATGTTTACAATGTGCCGGCTGAGAAGGTATTATTTTGATCCGAGCAACAAATTTATGCGTTAACAGCAAAATTATGTAATTCTTTACACAAATTGTTTGAATCCTTAGTCCTTTAGCCTTTTTTTTCTAACGGAGTCATTTTGCCATTTTCTTGGCAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACA
CCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGgtaagacgccgattgcacatattttatattgaaggattgtgcaagattgattgtgaaaagattgaaaaagattctgaaga
tagaaaagggtttctaactctgtttacttgttgcgactgcagGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGGTACCTAATCATACGCTCAATTATCACCAATTTATTATTGCCTCTGAATTTAGAAGTTTGAATAGAATCAAACGAATAAATCATTTACTAATTATGATTA
GGGTAAATTTAACTGATTGAATAAGCAAACGTGTATTAACTTGATCAAGTTTTTTTGGTGATCGTGCGAGTACAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTG
TCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTC
ATTGTACAAAATATTTTAAATATTTATTACAATTGACC
Intron 2 GTATTATTTT ... TTCTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.31 | 19.8 | 0.8 | 9 |
| A2 | 37.93 | 18 | 1.5 | 11 |
| A3 | 17.65 | 14 | 0.8 | 3 |
| A4 | 30 | 14 | 0 | 6 |
| A5 | 39.26 | 7.8 | 0 | 5 |
| A6 | 40.72 | 17.5 | 0.8 | 12 |
| A7 | 26.83 | 60 | 2.5 | 22 |
| A8 | 34.68 | 28.3 | 5.5 | 15 |
| A9 | 35.29 | 11 | 1.5 | 6 |
| A10 | 33.53 | 37.8 | 1.8 | 19 |
>TRINITY_DN38157_c0_g1_i5 from sample A6 / Example spliced isoformGGCCAAACAGATCCGGATTCGAGGTATTTTCATGTTCAGACAATTGTCATTTGATTTTTTTTCCGAATCGTCGATACCTGAGCAAGCTTTAATGTTGTGTAAGGCTAACTTTTTTCTTATTGCACTATTTTCAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGG
AATGATGAATGTTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAG
TCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCAC
GCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTA
CAATTGACC
>TRINITY_DN38157_c0_g1_i2 from sample A6 / Example unspliced isoform:GGCCAAACAGATCCGGATTCGAGGTATTTTCATGTTCAGACAATTGTCATTTGATTTTTTTTCCGAATCGTCGATACCTGAGCAAGCTTTAATGTTGTGTAAGGCTAACTTTTTTCTTATTGCACTATTTTCAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGG
AATGATGAATGTTTACAATGTGCCGGCTGAGAAGgtattattttgatccgagcaacaaatttatgcgttaacagcaaaattatgtaattctttacacaaattgtttgaatccttagtcctttagccttttttttctaacggagtcattttgccattttcttggcagGCTCAAGCAATTATGAGACTTGCCAGCGATAACA
CCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGTAAGACGCCGATTGCACATATTTTATATTGAAGGATTGTGCAAGATTGATTGTGAAAAGATTGAAAAAGATTCTGAAGA
TAGAAAAGGGTTTCTAACTCTGTTTACTTGTTGCGACTGCAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGGTACCTAATCATACGCTCAATTATCACCAATTTATTATTGCCTCTGAATTTAGAAGTTTGAATAGAATCAAACGAATAAATCATTTACTAATTATGATTA
GGGTAAATTTAACTGATTGAATAAGCAAACGTGTATTAACTTGATCAAGTTTTTTTGGTGATCGTGCGAGTACAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTG
TCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTC
ATTGTACAAAATATTTTAAATATTTATTACAATTGACC
Intron 3 GTATGTTTTC ... TATGCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 38 | 10 | 9 |
| A2 | 24.14 | 11 | 4 | 3 |
| A3 | 19.15 | 19 | 7 | 2 |
| A4 | 17.39 | 19 | 4 | 4 |
| A5 | 62.5 | 3 | 1 | 9 |
| A6 | 15.22 | 39 | 8 | 6 |
| A7 | 12.24 | 43 | 5 | 7 |
| A8 | 22.03 | 23 | 7 | 6 |
| A9 | 22.86 | 27 | 7 | 9 |
| A10 | 19.23 | 21 | 2 | 8 |
>TRINITY_DN41919_c0_g2_i7 from sample A8 / Example spliced isoformTGGTTATGGCGTTATTCGACCAGACTTCTGTAGTGGAGACCGGTACATCAAGAACGTGGCTTTTACTTTTAACGGAAAATATCTCCACTTGGCTTGCGAATGCTGATCTCCACATGCGGATTAAACAGCTGTAACTTGCAAAGCACCGTCTTGTAGTCACCAAATCCCATGTCTGCTCGCCAATTATTTATTTTCTTGTT
TGCCACGGACTACGCAGAATTCCGTCCATTTATTCGGCGCTTTGATTGATCTCCATCTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAA
GTTGTGAAAGGCAGTAGCAGTTTCGAATTCGGCCGTGAAAAACATCTAGCGAAGCTGAGATTCATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATC
AAGCCACACGGAAACGTTAGAATTGTTTCCCATGAGCACTTCTGGTTTCAGTTCAAACCCTAGAGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATG
TTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAGTCAGGAAATTG
TCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCT
TTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTACAATTGACCAA
TTTTTATTATTAAAAAAAAAAC
>TRINITY_DN41919_c0_g2_i1 from sample A8 / Example unspliced isoform:TGGTTATGGCGTTATTCGACCAGACTTCTGTAGTGGAGACCGGTACATCAAGAACGTGGCTTTTACTTTTAACGGAAAATATCTCCACTTGGCTTGCGAATGCTGATCTCCACATGCGGATTAAACAGCTGTAACTTGCAAAGCACCGTCTTGTAGTCACCAAATCCCATGTCTGCTCGCCAATTATTTATTTTCTTGTT
TGCCACGGACTACGCAGAATTCCGTCCATTTATTCGGCGCTTTGATTGATCTCCATCTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAA
GTTGTGAAAGGCAGTAGCAGTTTCGAATTCGGCCGTGAAAAACATCTAGCGAAGCTGAGATgtatgttttcttttgcagtttaattttattttcagatcggcctgtgcaatttgctgtctgtccataaatttccttccgttcttgttttggtaatttgttttggctgattttgtatcggttcttgatgtatgcaacagTC
ATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATCAAGCCACACGGAAACGTTAGAATTGTTTCCCATGAGCACTTCTGGTTTCAGTTCAAACCCTAG
AGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATGTTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGA
GCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGATTGAACAGAGTGGCTCCTTACAGCAGG
ATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGT
ATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTACAATTGACCAATTTTTATTATTAAAAAAAAAAC
Intron 4 GTATTTTCAT ... CTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 14 | 8 | 6 |
| A2 | 30.12 | 29 | 15 | 10 |
| A3 | 21.74 | 9 | 1 | 4 |
| A4 | 38.18 | 17 | 10 | 11 |
| A5 | 25 | 9 | 5 | 1 |
| A6 | 11.11 | 16 | 3 | 1 |
| A7 | 30.12 | 29 | 14 | 11 |
| A8 | 32.11 | 37 | 17 | 18 |
| A9 | 27.27 | 16 | 6 | 6 |
| A10 | 22.77 | 39 | 18 | 5 |
>TRINITY_DN41919_c0_g2_i6 from sample A8 / Example spliced isoformTGGTTATGGCGTTATTCGACCAGACTTCTGTAGTGGAGACCGGTACATCAAGAACGTGGCTTTTACTTTTAACGGAAAATATCTCCACTTGGCTTGCGAATGCTGATCTCCACATGCGGATTAAACAGCTGTAACTTGCAAAGCACCGTCTTGTAGTCACCAAATCCCATGTCTGCTCGCCAATTATTTATTTTCTTGTT
TGCCACGGACTACGCAGAATTCCGTCCATTTATTCGGCGCTTTGATTGATCTCCATCTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAA
GTTGTGAAAGGCAGTAGCAGTTTCGAATTCGGCCGTGAAAAACATCTAGCGAAGCTGAGATTCATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATC
AAGCCACACGGAAACGTTAGAATTGTTTCCCATGAGCACTTCTGGTTTCAGTTCAAACCCTAGAGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATG
TTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGTAAGACGCCGATTGCACATATT
TTATATTGAAGGATTGTGCAAGATTGATTGTGAAAAGATTGAAAAAGATTCTGAAGATAGAAAAGGGTTTCTAACTCTGTTTACTTGTTGCGACTGCAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGGTACCTAATCATACGCTCAATTATCACCAATTTATTATTGCCT
CTGAATTTAGAAGTTTGAATAGAATCAAACGAATAAATCATTTACTAATTATGATTAGGGTAAATTTAACTGATTGAATAAGCAAACGTGTATTAACTTGATCAAGTTTTTTTGGTGATCGTGCGAGTACAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAAT
CAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGG
TCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTACAATTGACCAATTTTTATTATTAAAAAAAAAAC
>TRINITY_DN41919_c0_g2_i4 from sample A8 / Example unspliced isoform:TGGTTATGGCGTTATTCGACCAGACTTCTGTAGTGGAGACCGGTACATCAAGAACGTGGCTTTTACTTTTAACGGAAAATATCTCCACTTGGCTTGCGAATGCTGATCTCCACATGCGGATTAAACAGCTGTAACTTGCAAAGCACCGTCTTGTAGTCACCAAATCCCATGTCTGCTCGCCAATTATTTATTTTCTTGTT
TGCCACGGACTACGCAGAATTCCGTCCATTTATTCGGCGCTTTGATTGATCTCCATCTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAA
GTTGTGAAAGGCAGTAGCAGTTTCGAATTCGGCCGTGAAAAACATCTAGCGAAGCTGAGATTCATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATC
AAGCCACACGGAAACGTTAGAATTGTTTCCCATGAGCACTTCTGGTTTCAGTTCAAACCCTAGAGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGgtattttcatgttcagacaattgtcatttgattttttttccgaatcgtcgatacctgagcaagctttaatgttgtgt
aaggctaactttttttcttattgcactattttcagCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATGTTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAG
CAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGTAAGACGCCGATTGCACATATTTTATATTGAAGGATTGTGCAAGATTGATTGTGAAAAGATTGAAAAAGATTCTGAAGATAGAAAAGGGTTTCTAACTCTGTTTACTTGT
TGCGACTGCAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGGTACCTAATCATACGCTCAATTATCACCAATTTATTATTGCCTCTGAATTTAGAAGTTTGAATAGAATCAAACGAATAAATCATTTACTAATTATGATTAGGGTAAATTTAACTGATTGAATAAGCAAACG
TGTATTAACTTGATCAAGTTTTTTTGGTGATCGTGCGAGTACAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCACGC
GACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTACA
ATTGACCAATTTTTATTATTAAAAAAAAAAC
Intron 5 GTACCTAATC ... GCGAGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.16 | 17 | 2.4 | 0 |
| A2 | 41.92 | 5 | 3.6 | 0 |
| A3 | 9.09 | 20 | 2.1 | 1.6 |
| A4 | 23.33 | 23 | 7 | 2.6 |
| A5 | 0 | 5 | 0 | 0.8 |
| A6 | 15.51 | 48 | 9.4 | 7.4 |
| A7 | 15.26 | 52 | 9.5 | 9.4 |
| A8 | 14.86 | 59 | 10.9 | 5.9 |
| A9 | 10.55 | 31 | 3.8 | 2.6 |
| A10 | 29.88 | 35 | 15.3 | 8.1 |
>TRINITY_DN91673_c0_g1_i2 from sample A4 / Example spliced isoformACTACGCAGAATTCCGTCCATTTATTCGGCGCTTTGATTGATCTCCATCTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAAGTTGTGAA
AGGCAGTAGCAGTTTCGAATTCGGCCGTGAAAAACATCTAGCGAAGCTGAGATTCATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATCAAGCCACA
CGGAAACGTTAGAATTGTTTCCCATGAGCACTTCTGGTTTCAGTTCAAACCCTAGAGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGGTATTTTCATGTTCAGACAATTGTCATTTGATTTTTTTTCCGAATCGTCGATACCTGAGCAAGCTTTAATGTTGTGTAAGGCTAA
CTTTTTTCTTATTGCACTATTTTCAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATGTTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAAT
CGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGA
AGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAAC
TCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTA
>TRINITY_DN91673_c0_g1_i3 from sample A4 / Example unspliced isoform:ACTACGCAGAATTCCGTCCATTTATTCGGCGCTTTGATTGATCTCCATCTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAAGTTGTGAA
AGGCAGTAGCAGTTTCGAATTCGGCCGTGAAAAACATCTAGCGAAGCTGAGATTCATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATCAAGCCACA
CGGAAACGTTAGAATTGTTTCCCATGAGCACTTCTGGTTTCAGTTCAAACCCTAGAGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATGTTTACAAT
GTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCA
ACGCTTCCTCGAAAAGCGAAAGGAGAGgtacctaatcatacgctcaattatcaccaatttattattgcctctgaatttagaagtttgaatagaatcaaacgaataaatcatttactaattatgattagggtaaatttaactgattgaataagcaaacgtgtattaacttgatcaagtttttttggtgatcgtgcgagtac
agATTGAACAGAG
Intron 6 GTATTTTCAT ... CTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.24 | 14 | 6.8 | 4.6 |
| A2 | 20.54 | 29 | 12.4 | 7.7 |
| A3 | 16.41 | 9 | 0.8 | 2.1 |
| A4 | 33.13 | 17 | 8.6 | 8.7 |
| A5 | 5.33 | 9 | 4 | 0.5 |
| A6 | 5.88 | 16 | 2.4 | 1 |
| A7 | 20.32 | 29 | 11.6 | 7.7 |
| A8 | 28.88 | 37 | 14.4 | 15.2 |
| A9 | 19.73 | 16 | 5 | 4.1 |
| A10 | 7.23 | 39 | 14.6 | 3.1 |
>TRINITY_DN130228_c3_g1_i2 from sample A1 / Example spliced isoformCGGCGCTTTGATTGATCTCCAACTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAAGTTGTGAAAGGCAGTAGCAGTTTCGAATTCGGCC
GTGAAAAACATCTAGCGAAGCTGAGATTCATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATCAAGCCACACGGAAACGTTAGAATTGTTTCCCATG
AGCACTTCTGGTTTCAGTTCAAACCCTAGAGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGCAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATGTTTACAATGTGCCGGCTGAGAAGGCTCAAGCAAT
TATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTTCCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGA
GATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTTTCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAA
CTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCTCTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTACAATTGACCAATTTTTATTATTACACTCTGGCATCTTGATTGACA
TCATGCAATTGGGAAACTTATTATAATTGAACAATTTTAATCCATGGCATCTTCATTGACATCAAGCAATT
>TRINITY_DN130228_c3_g1_i3 from sample A1 / Example unspliced isoform:CGGCGCTTTGATTGATCTCCAACTCCTGGAGTTTTGGGAAAAGAGAGATTGTTTAACAAATTTTCGGGATTTATACGAGAAATTGAGTTTCCAAGCTATGTCGTCAAGTTCATATATGGCTCTGGATTTTCTCGGTGTTCAGGATGACCCTGAAGCAAACGAAAAAGTTGTGAAAGGCAGTAGCAGTTTCGAATTCGGCC
GTGAAAAACATCTAGCGAAGCTGAGATTCATGCAAGATCTGTCTCGGATAAAACCGCAGATGATGGAAAAGGCGTTTTCGTCGGTCGGGCTTTCAGAGGACAAGAAGGCCAATTTCGCTCATGCCAATCGTCAGGCCAAGGGCTTTAACGGACGATCCGAGGAATCAAGCCACACGGAAACGTTAGAATTGTTTCCCATG
AGCACTTCTGGTTTCAGTTCAAACCCTAGAGTTACAGATAATAAGATAACCTTGCCATTTTTAATAGGCCAAACAGATCCGGATTCGAGgtattttcatgttcagacaattgtcatttgattttttttccgaatcgtcgatacctgagcaagctttaatgttgtgtaaggctaacttttttcttattgcactattttcag
CAAATTCGTTACGGCAAAAGTTCCGGAGCAACAGTCCACTGCTCAACTCACTATTTTTTATAACGGAATGATGAATGTTTACAATGTGCCGGCTGAGAAGGCTCAAGCAATTATGAGACTTGCCAGCGATAACACCTCGAGCAATACAAGAATATCTACGAGCAGCAGCAAAATCGAACAGATGTCGAAACCGTTGCCTT
CCAGTCCAGCATCGAACGTTGTCAATGAAAATCAGGCGCAAAGATCGCCAGTAGGCCTGGAATTAGTCAGGAAATTGTCTCTGCAACGCTTCCTCGAAAAGCGAAAGGAGAGATTGAACAGAGTGGCTCCTTACAGCAGGATGAAGCCAGCGACATTGCCTTCCAAAGCAGGGAAGAAATCAGACGACCAGATCATCCTT
TCGTTGGGTTGTTCATCATAAATTTTCAAAATGTTTGTCAATGCTATTGACTTTTAACTGCATCACGCGACAATTCTTTTACTTTTAACCAGATTGCTGCTATCGACAAAACTGACCGAGGAAAGCCACGCGTTTTGTGTATGCCGATACCGAGTACACCGTGGTCACGGAAACTCATGGTCAGGACTCGGGAGTTTCCT
CTCCATTGTAGAACTATTTCTTTATTCGGCAGCATTCATTGTACAAAATATTTTAAATATTTATTACAATTGACCAATTTTTATTATTACACTCTGGCATCTTGATTGACATCATGCAATTGGGAAACTTATTATAATTGAACAATTTTAATCCATGGCATCTTCATTGACATCAAGCAATT