sp|Q9ZW96|LBD40_ARATH ----> LOB domain-containing protein 40

Intron 1 GTATGAGCTA ... CTTTTGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	72.88	7	2.8	18.8
A2	55.2	23.5	8.1	29
A3	37.83	55.9	2.7	34
A4	39.53	26	2.8	17
A5	65.22	8	4	15
A6	60.18	27	1.8	40.8
A7	33.7	72.5	5.5	36.8
A8	39.84	58.9	5.8	39
A9	45.95	60	10	51
A10	42.86	72	6	54

>TRINITY_DN111332_c0_g1_i2 from sample A1 / Example spliced isoform

TGCTTGTCTGCGTCCTAAATATTCATGCAAATATAATTTCTGCAGATAAATAAGTGCAATTCTGCGAACAATCCATTGAGAGAAATTCAAGCTTGGAGGAATATACAATGAGGATGAGTTGTAATGGCTGTCGAGTTCTGCGAAAGGGTTGCAGCGATTCATGTGAGCTGCGCCCATGCCTTCAGTGGATAAGAAGCTCT
GAATCCCAGGCAAATGCAACTGTGTTTCTGGCCAAGTTCTATGGACGCTCAGGACTCATGAATCTCATCAACTCTGCCCCTGAGTATTTAAGGCCCACTTTATTCAGGTCCCTTCTGTACGAAGCCTGTGGGAGAATTGTGAATCCAACATACGGATCAGTGGGACTTCTATGGTCTGGTAATTGGCACATCTGCCAGGC
TGCAGTAGAGAATGTTCTGAAGGGATATCCTTTACAACCGGTTAATTTACTGGAAATAGATTCCCCTCCTCCTGCTGCTGCGGCGGCGGCGGCACCTCAGTCGATGGAAACAGTAGCAGACAAGCTTCACAGCATCAAGTCCAGGGGTCGATTCAAGCGCCCTTTGTACAGAAAACCCTCCACAGACATTAAGCAGCTCA
ATCTGCAAACACTGAACGATGAGAGCGTGGAAGGCATTCTAGGAGGATCTCAGGTCTACAATCTACGTTGGAGGAGATGTTATCCAAAGGAATTCCAGTTAATCAGTGGCCAGCCAGCCACCAACTTCTTATCGACTGATTCCAGCAGTGACTCTGATGATTTAGCCCGTCTTAAATCTGGGTTTCAAAACGTGAAATCC
AACTATAATCCAATCGAGAATAGAGCAGAGACCCGGACCCAATCTGAAGGAATCGAAGCTCAAAGTGAAGACCCACTTCAAAACTTACTTCAGCAGAACGATAATAATGAGGTGGAGAATATTATGAGCGCAGAATTAACAGATGAGAAGAATTTGGCACTGGAGCTTACGCTTGGATCTCCAATGTCAGAAACAACAAA
TGCCCACAGCAGACAATTGAGTAGTAGCCATATGGATCGTTCCCCTCTTCATGTAAGTTCTCTACGTCTGTCTTTAAGCCAATAGATTCAACGGCTTCGCAAGTTTCAATTGTATATAATATGAACGAGAGGTTAAATAATCGCATCATCGAATACGTGAGACTCGTTTTCTGTAAATGCATGAACCAGTTTGAGAAGGT
TTAGGGACGGGTTTAAGATTGTGTAAGCTTCTACGATGC

>TRINITY_DN111332_c0_g1_i3 from sample A1 / Example unspliced isoform:

TGCTTGTCTGCGTCCTAAATATTCATGCAAATATAATTTCTGCAGATAAATAAGTGCAATTCTGCGAACAATCCATTGAGAGgtatgagctaatattttttgaatgttttgcccaaaaaatgtatgagcagtgatatggatagcggttttgttgtgtgctcttttgacagAAATTCAAGCTTGGAGGAATATACAATGAG
GATGAGTTGTAATGGCTGTCGAGTTCTGCGAAAGGGTTGCAGCGATTCATGTGAGCTGCGCCCATGCCTTCAGTGGATAAGAAGCTCTGAATCCCAGGCAAATGCAACTGTGTTTCTGGCCAAGTTCTATGGACGCTCAGGACTCATGAATCTCATCAACTCTGCCCCTGAGTATTTAAGGCCCACTTTATTCAGGTCCC
TTCTGTACGAAGCCTGTGGGAGAATTGTGAATCCAACATACGGATCAGTGGGACTTCTATGGTCTGGTAATTGGCACATCTGCCAGGCTGCAGTAGAGAATGTTCTGAAGGGATATCCTTTACAACCGGTTAATTTACTGGAAATAGATTCCCCTCCTCCTGCTGCTGCGGCGGCGGCGGCACCTCAGTCGATGGAAACA
GTAGCAGACAAGCTTCACAGCATCAAGTCCAGGGGTCGATTCAAGCGCCCTTTGTACAGAAAACCCTCCACAGACATTAAGCAGCTCAATCTGCAAACACTGAACGATGAGAGCGTGGAAGGCATTCTAGGAGGATCTCAGGTCTACAATCTACGTTGGAGGAGATGTTATCCAAAGGAATTCCAGTTAATCAGTGGCCA
GCCAGCCACCAACTTCTTATCGACTGATTCCAGCAGTGACTCTGATGATTTAGCCCGTCTTAAATCTGGGTTTCAAAACGTGAAATCCAACTATAATCCAATCGAGAATAGAGCAGAGACCCGGACCCAATCTGAAGGAATCGAAGCTCAAAGTGAAGACCCACTTCAAAACTTACTTCAGCAGAACGATAATAATGAGG
TGGAGAATATTATGAGCGCAGAATTAACAGATGAGAAGAATTTGGCACTGGAGCTTACGCTTGGATCTCCAATGTCAGAAACAACAAATGCCCACAGCAGACAATTGAGTAGTAGCCATATGGATCGTTCCCCTCTTCATGTAAGTTCTCTACGTCTGTCTTTAAGCCAATAGATTCAACGGCTTCGCAAGTTTCAATTG
TATATAATATGAACGAGAGGTTAAATAATCGCATCATCGAATACGTGAGACTCGTTTTCTGTAAATGCATGAACCAGTTTGAGAAGGTTTAGGGACGGGTTTAAGATTGTGTAAGCTTCTACGATGC

Intron 2 GTATGAGCTA ... GTATGAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60	10	3	15
A2	80	5	8	20
A3	55.88	15	6	19
A4	75	3	3	9
A5	100	0	4	9
A6	71.43	10	2	25
A7	56.25	14	7	18
A8	81.82	4	6	18
A9	73.91	12	10	34
A10	75	9	6	27

>TRINITY_DN34487_c0_g1_i3 from sample A8 / Example spliced isoform

GGTGGACAGGCTTCATGAACCGACCTTGAGAAATTGGATCCCACCACCATCTTAAAAAATGGGCTGGCTGCGTGCTTGTCTGCGTCCTAAATATTCATGCAAATATAATTTCTGCAGATAAATAAGTGCAATTCTGCGAACAATCCATTGAGAGTGATATGGATAGCGGTTTTGTTGTGTGCTCTTTTGACAGAAATTCA
AGCTTGGAGGAATATACAATGAGGATGAGTTGTAATGGCTGTCGAGTTCTGCGAAAGGGTTGCAGCGATTCATGTGAGCTGCGCCCATGCCTTCAGTGGATAAGAAGCTCTGAATCCCAGGCAAATGCAACGGTGTTTCTGGCCAAGTTCTATGGACGCTCAGGACTCATGAATCTCATCAACTCTGCCCCTGAGTATTT
AAGGCCCACTTTATTCAGGTCCCTTCTGTACGAAGCCTGTGGGAGAATTGTGAATCCAACATACGGATCAGTGGGACTTCTATGGTCTGGTAATTGGCACATCTGCCAGGCTGCAGTAGAGAATGTTCTGAAGGGATATCCTTTACAACCGGTTAATTTACTGGAAATAGATTCCCCTCCTCCTGCTGCTGCGGCGGCGG
CGGCACCTCAGTCGATGGAAACAGTAGCAGACAAGCTTCACAGCATCAAGTCCAGGGGTCGATTCAAGCGCCCTTTGTACAGAAAACCCTCCACAGACATTAAGCAGCTCAATCTGCAAACACTGAACGATGAGAGCGTGGAAGGCATTCTAGGAGGATCTCAGGTCTACAATCTACGTTGGAGGAGATGTTATCCAAAG
GAATTCCAGTTAATCAGTGGCCAGCCAGCCACCAACTTCTTATCGACTGATTCCAGCAGTGACTCTGATGATTTAGCCCGTCTTAAATCTGGGTTTCAAAACGTGAAATCCAACTATAATCCAATCGAGAATAGAGCAGAGACCCGGACCCAATCTGAAGGAATCGAAGCTCAAAGTGAAGACCCACTTCAAAACTTACT
TCAGCAGAACGATAATAATGAGGTGGAGAATATTATGAGCGCAGAATTAACAGATGAGAAGAATTTGGCACTGGAGCTTACGCTTGGATCTCCAATGTCAGAAACAACAAATGCCCACAGCAGACAATTGAGTAGTAGCCATATGGATCGTTCCCCTCTTCATGTAAGTTCTCTACGTCTGTCTTTAAGCCAATAGATTC
AACGGCTTCGCAAGTTTCAATTGTATATAATATGAACGAGAGGTTAAATAATCGCATCATCGAATACGTGAGACTCGTTTTCTGTAAATGCATGAACCAGTTTGAGAAGGTTTAGGGACGGGTTTAAGATTGTGTAAGCTTCTACGATGCAAAATGTGAAGTTTGAAAATATTTCTATCAATTTTGAAATTTTACTTTCT
TAAGAAAATACCATTGATTTTGATTTTTTCCATTATGAAGGTGA

>TRINITY_DN34487_c0_g1_i2 from sample A8 / Example unspliced isoform:

GGTGGACAGGCTTCATGAACCGACCTTGAGAAATTGGATCCCACCACCATCTTAAAAAATGGGCTGGCTGCGTGCTTGTCTGCGTCCTAAATATTCATGCAAATATAATTTCTGCAGATAAATAAGTGCAATTCTGCGAACAATCCATTGAGAGgtatgagctaatattttttgaatgttttgcccaaaaaatgtatgag
cagTGATATGGATAGCGGTTTTGTTGTGTGCTCTTTTGACAGAAATTCAAGCTTGGAGGAATATACAATGAGGATGAGTTGTAATGGCTGTCGAGTTCTGCGAAAGGGTTGCAGCGATTCATGTGAGCTGCGCCCATGCCTTCAGTGGATAAGAAGCTCTGAATCCCAGGCAAATGCAACGGTGTTTCTGGCCAAGTTCT
ATGGACGCTCAGGACTCATGAATCTCATCAACTCTGCCCCTGAGTATTTAAGGCCCACTTTATTCAGGTCCCTTCTGTACGAAGCCTGTGGGAGAATTGTGAATCCAACATACGGATCAGTGGGACTTCTATGGTCTGGTAATTGGCACATCTGCCAGGCTGCAGTAGAGAATGTTCTGAAGGGATATCCTTTACAACCG
GTTAATTTACTGGAAATAGATTCCCCTCCTCCTGCTGCTGCGGCGGCGGCGGCACCTCAGTCGATGGAAACAGTAGCAGACAAGCTTCACAGCATCAAGTCCAGGGGTCGATTCAAGCGCCCTTTGTACAGAAAACCCTCCACAGACATTAAGCAGCTCAATCTGCAAACACTGAACGATGAGAGCGTGGAAGGCATTCT
AGGAGGATCTCAGGTCTACAATCTACGTTGGAGGAGATGTTATCCAAAGGAATTCCAGTTAATCAGTGGCCAGCCAGCCACCAACTTCTTATCGACTGATTCCAGCAGTGACTCTGATGATTTAGCCCGTCTTAAATCTGGGTTTCAAAACGTGAAATCCAACTATAATCCAATCGAGAATAGAGCAGAGACCCGGACCC
AATCTGAAGGAATCGAAGCTCAAAGTGAAGACCCACTTCAAAACTTACTTCAGCAGAACGATAATAATGAGGTGGAGAATATTATGAGCGCAGAATTAACAGATGAGAAGAATTTGGCACTGGAGCTTACGCTTGGATCTCCAATGTCAGAAACAACAAATGCCCACAGCAGACAATTGAGTAGTAGCCATATGGATCGT
TCCCCTCTTCATGTAAGTTCTCTACGTCTGTCTTTAAGCCAATAGATTCAACGGCTTCGCAAGTTTCAATTGTATATAATATGAACGAGAGGTTAAATAATCGCATCATCGAATACGTGAGACTCGTTTTCTGTAAATGCATGAACCAGTTTGAGAAGGTTTAGGGACGGGTTTAAGATTGTGTAAGCTTCTACGATGCA
AAATGTGAAGTTTGAAAATATTTCTATCAATTTTGAAATTTTACTTTCTTAAGAAAATACCATTGATTTTGATTTTTTCCATTATGAAGGTGA