sp|F4IDY7|DDR4_ARATH ----> DDT domain-containing protein DDR4
Intron 1 GTGAGTGTTT ... TCCTCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.8 | 69 | 2.8 | 11.4 |
| A2 | 30 | 30 | 7.2 | 13 |
| A3 | 10.33 | 59 | 6.8 | 7 |
| A4 | 19.68 | 57 | 3.6 | 14.6 |
| A5 | 16.26 | 23 | 1.8 | 4.6 |
| A6 | 5 | 21 | 0 | 1.2 |
| A7 | 11.17 | 107 | 0 | 15.6 |
| A8 | 10.21 | 35 | 0 | 4.8 |
| A9 | 8.66 | 76 | 0 | 8.4 |
| A10 | 10.91 | 109 | 1.6 | 15.4 |
>TRINITY_DN110032_c0_g2_i1 from sample A2 / Example spliced isoformGGGCAAGGGATGCATTTGTCTCTGGTCAAAAACAGGAAACGCGGACAATTAACCCTGGGTTAATAAAGACGAGATTTGAGGGGGGGTGGGTACAGGTCCTTTGACGTATTTCACGACATTGGTCCTCAGCTTCTACTATTATTGCATCCCGTGCTTTTTCCTTCTCACCCAATTGGAGGTGGAGGCTACCTTAATTCTTT
TACGGGATTCGATCTCTGCTCCATCTGAAAGGCCCTGCATACTGCAAACGCTTTCATCTAATTCTCAAGGATCAATGCGCTTGTGATCATTTTTTGCACTTTCTGCCATCAATTTTGACGGCAGCAGGTTTTAAATTTCACTGATTGATTGATTTGATGATGATGGTGGAAGGAGGAGGAAACAGCTTCGATCAAGTACA
TGGGGAAACCAGAAACCGTCGTCCAGCAAGAGCGTGTACTGCACGGACCCCGGCTCGCCTCGCGCCTCTCGCTCCGGTCGTCGAGCGCTCCGCTCCCCGGAGGAACATCAGCAGCAATGAAGACCGAGATTTCTGCACCGTCTTAACTACTCCTCCTCCTCCTACCCAGAAGCGCCGATGGCTCCTTCGAAGCATGTGGG
AGTTGGCTTCGATTCTCAGCTTCTTTCACACTGCAGGTCTTTCGACCAATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACACCAAACGGCATGCTAGGCGATATACACATACCGCTACTGAAGGCCATCCCTCCTGTAATCAGAAGTGCGCTTGGGCGTGACACATGGGTGTCTGT
ATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGGTAGCTGAAGGTGAATTTCCAATTGTTGCATCTCGTGGAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGCGAGATTCGTGTTGAGCAAGAGGACATTCAACCCCATATCTATAGTTCTCTAAAGCATGGAG
TCCAGATCTCAGCATTTCGTAATGAGCGGATTGGGGGGGATTCACATGGAACTTCCTACTGGTACGAGGATGATCCCATTATTGGTCACCGTTTATATAGGGAGATTCGGAAGATTGAGGTAAAAAATAAGACTAAGGGTAAAGGTCGTTTGTCCTTGCCAGTGGTGACCTGTCAGTGGGAAACCATAGCAACCAATTTT
GATGAATTTCAGGCTGTAGCGGAAAAACTTGCTTCAAGTAGAAATAAGATGGAAGCTGGGGTTGGAAAGAAACTTAATAATGATATTCTCCCGGAGCTTGAAAAGAACCAGAAGATGAAGGAAAAGGCACTGAGAAAGCAACAGAGACAAGCTATGCTTCTTGATAGCTTCATAAGCTCACAAGGACCATCTTCAGGCCG
TTCTCTTCGTTATCGTAAACCTGTTACTTACACATTTGATGAATTTGACCGATCCATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTTTACTCAGAAGATTTCCGGTTAGACCTGACTATCCAGCTGCAAATGGTAGACAGAATGGTAACCTGGAATATTCTGGTGCGACTTCTTCCAGTT
TGAGGAATGGAAGTGGAGAAACTGATGCAGAACATACAGCTGAACCTTCGAGGTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTGGAAGCTGTTTCAGATAATGAAGCAGATTTTGACAGTGACGAGGAGATAGTTGGGGAGGCGATATATGATGATGAATATATCAAAAGA
CGAAGACGTAAAAAATCATCTAGTAGCTCGGAAGGTGATGAAGAATATAGAGGAGATGATGAGAATATTGAAGAAGAAGATGATGATTATGGCAATGCTTTAAGTACTAGTGAAGAGATGGATGATTCTCGCAATGGAAAATGGGGACACGGTAAGAATATAGGATGGGCAAGTGGAAGAAAAAGGAAGGGCCTCAAGTT
GAAGTCCGTTGGTGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAGCCACTCACAACATTGATTATAGACTATATGATATGTCAAGTTCCGAGGAAGAATATGCTGAAGACGTGGAGAAGCTAGCTGGATCAAGTAATGAAATTGATATGCCTAAAAGCCAATCTGATGTAAGTGACAGTGCTGATTATTATATGGAAA
GTGAAGATTGTCTTGATGATATTACGGAAAAACGTAATGATGGAGAACAGTTTATGAAGTCCGTTAATGCTGTGGATGGCCCACTTGGGAAAGCATCTTTTGAGGAAAGGACGAAAGTTACAAGGGAACAACCTGCTGATGTGAAGAAACGGCGTTTCATTGACCTGAATGAGTTAGCTCCTTTTTCAGGACATGATGAT
GGACCAGCGGCATGAGAAGTTAAACAGCACAAGGATTTTAATCTGCCTTGCACAAGAAATATGAATGCTGCATTGCCAGGGCATGCTATTGCTGTTGCAGATCATCCCATACTTTAATTGCCATGCTGAATATCTGCAATTTTCTTTCAGGAGAAAGATGACCTAATAATCCTGTAGATGCTTATTGTTGTATCACGTTC
ATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTCAATAATAAGAAACCTT
>TRINITY_DN110032_c0_g2_i3 from sample A2 / Example unspliced isoform:GGGCAAGGGATGCATTTGTCTCTGGTCAAAAACAGGAAACGCGGACAATTAACCCTGGGTTAATAAAGACGAGATTTGAGGGGGGGTGGGTACAGGTCCTTTGACGTATTTCACGACATTGGTCCTCAGCTTCTACTATTATTGCATCCCGTGCTTTTTCCTTCTCACCCAATTGGAGGTGGAGGCTACCTTAATTCTTT
TACGGGATTCGATCTCTGCTCCATCTGAAAGGCCCTGCATACTGCAAACGCTTTCATCTAATTCTCAAGGATCAATGCGCTTGTGATCATTTTTTGCACTTTCTGCCATCAATTTTGACGGCAGCAGGTTTTAAATTTCACTGATTGATTGATTTGATGATGATGGTGGAAGGAGGAGGAAACAGCTTCGATCAAGTACA
TGGGGAAACCAGAAACCGTCGTCCAGCAAGAGCGTGTACTGCACGGACCCCGGCTCGCCTCGCGCCTCTCGCTCCGGTCGTCGAGCGCTCCGCTCCCCGGAGGAACATCAGCAGCAATGAAGACCGAGATTTCTGCACCGTCTTAACTACTCCTCCTCCTCCTACCCAGAAGCGCCGATGGCTCCTTCGAAGCATGTGGG
AGTTGGCTTCGATTCTCAGCTTCTTTCACACTGCAGGTCTTTCGACCAATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACACCAAACGGCATGCTAGGCGATATACACATACCGCTACTGAAGGCCATCCCTCCTGTAATCAGAAGTGCGCTTGGGCGTGACACATGGGTGTCTGT
ATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGGTAGGTTATACCAATAGGACAGGATCTTTGTAGTTTAATGGTATAGTTCTTAATCTGTTATTCGACATTGAAGGCAAGCAAATTTTTGAATGTGTTGTGGATGAAGTAGCTTATTTGCTTTCATCTGTAGGTAGCTGAAGGTGAATTTCCAATTGTTGCATCTCGT
GGgtgagtgttttagtatcaagtatatttgtatttcatatggattttatttctatttgtaatctgaggcgtcctttcctctgtagAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGCGAGATTCGTGTTGAGGTATAAAATACACATGCATTGATATTTTGGTAA
TAGCATCAAAATGAAATGATTCTATGCTTCATGCTTTGTGACTAAGTTTAAAGAAAGGCATGAATTTGTTTGTTTTCTTCCTTTTTGTTCTTTTTGGTGATAATATTTATTTTTACAAAAAAATGCATTTTTTTCTGAGTAAGAATGTTCCTGGTTGACTCACGATCAGCATCTCAGTTATGCTGTAGTACTTCCAAATA
TAGTTCATAGATAACAATATTTGTGTTTTTGATGTCC
Intron 2 GTTTGAATTC ... TTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.96 | 15 | 32 | 26.1 |
| A2 | 69.77 | 13 | 44 | 16 |
| A3 | 80.48 | 4.4 | 20 | 16 |
| A4 | 48.94 | 12 | 18 | 5 |
| A5 | 66.67 | 1 | 2 | 2 |
| A6 | 81.17 | 27 | 78 | 154.6 |
| A7 | 75.7 | 65.3 | 188.9 | 217.6 |
| A8 | 73.34 | 143.6 | 336 | 454.1 |
| A9 | 67.5 | 104.3 | 205.3 | 227.9 |
| A10 | 67.97 | 48.4 | 115 | 90.3 |
>TRINITY_DN110032_c0_g2_i1 from sample A2 / Example spliced isoformGGGCAAGGGATGCATTTGTCTCTGGTCAAAAACAGGAAACGCGGACAATTAACCCTGGGTTAATAAAGACGAGATTTGAGGGGGGGTGGGTACAGGTCCTTTGACGTATTTCACGACATTGGTCCTCAGCTTCTACTATTATTGCATCCCGTGCTTTTTCCTTCTCACCCAATTGGAGGTGGAGGCTACCTTAATTCTTT
TACGGGATTCGATCTCTGCTCCATCTGAAAGGCCCTGCATACTGCAAACGCTTTCATCTAATTCTCAAGGATCAATGCGCTTGTGATCATTTTTTGCACTTTCTGCCATCAATTTTGACGGCAGCAGGTTTTAAATTTCACTGATTGATTGATTTGATGATGATGGTGGAAGGAGGAGGAAACAGCTTCGATCAAGTACA
TGGGGAAACCAGAAACCGTCGTCCAGCAAGAGCGTGTACTGCACGGACCCCGGCTCGCCTCGCGCCTCTCGCTCCGGTCGTCGAGCGCTCCGCTCCCCGGAGGAACATCAGCAGCAATGAAGACCGAGATTTCTGCACCGTCTTAACTACTCCTCCTCCTCCTACCCAGAAGCGCCGATGGCTCCTTCGAAGCATGTGGG
AGTTGGCTTCGATTCTCAGCTTCTTTCACACTGCAGGTCTTTCGACCAATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACACCAAACGGCATGCTAGGCGATATACACATACCGCTACTGAAGGCCATCCCTCCTGTAATCAGAAGTGCGCTTGGGCGTGACACATGGGTGTCTGT
ATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGGTAGCTGAAGGTGAATTTCCAATTGTTGCATCTCGTGGAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGCGAGATTCGTGTTGAGCAAGAGGACATTCAACCCCATATCTATAGTTCTCTAAAGCATGGAG
TCCAGATCTCAGCATTTCGTAATGAGCGGATTGGGGGGGATTCACATGGAACTTCCTACTGGTACGAGGATGATCCCATTATTGGTCACCGTTTATATAGGGAGATTCGGAAGATTGAGGTAAAAAATAAGACTAAGGGTAAAGGTCGTTTGTCCTTGCCAGTGGTGACCTGTCAGTGGGAAACCATAGCAACCAATTTT
GATGAATTTCAGGCTGTAGCGGAAAAACTTGCTTCAAGTAGAAATAAGATGGAAGCTGGGGTTGGAAAGAAACTTAATAATGATATTCTCCCGGAGCTTGAAAAGAACCAGAAGATGAAGGAAAAGGCACTGAGAAAGCAACAGAGACAAGCTATGCTTCTTGATAGCTTCATAAGCTCACAAGGACCATCTTCAGGCCG
TTCTCTTCGTTATCGTAAACCTGTTACTTACACATTTGATGAATTTGACCGATCCATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTTTACTCAGAAGATTTCCGGTTAGACCTGACTATCCAGCTGCAAATGGTAGACAGAATGGTAACCTGGAATATTCTGGTGCGACTTCTTCCAGTT
TGAGGAATGGAAGTGGAGAAACTGATGCAGAACATACAGCTGAACCTTCGAGGTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTGGAAGCTGTTTCAGATAATGAAGCAGATTTTGACAGTGACGAGGAGATAGTTGGGGAGGCGATATATGATGATGAATATATCAAAAGA
CGAAGACGTAAAAAATCATCTAGTAGCTCGGAAGGTGATGAAGAATATAGAGGAGATGATGAGAATATTGAAGAAGAAGATGATGATTATGGCAATGCTTTAAGTACTAGTGAAGAGATGGATGATTCTCGCAATGGAAAATGGGGACACGGTAAGAATATAGGATGGGCAAGTGGAAGAAAAAGGAAGGGCCTCAAGTT
GAAGTCCGTTGGTGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAGCCACTCACAACATTGATTATAGACTATATGATATGTCAAGTTCCGAGGAAGAATATGCTGAAGACGTGGAGAAGCTAGCTGGATCAAGTAATGAAATTGATATGCCTAAAAGCCAATCTGATGTAAGTGACAGTGCTGATTATTATATGGAAA
GTGAAGATTGTCTTGATGATATTACGGAAAAACGTAATGATGGAGAACAGTTTATGAAGTCCGTTAATGCTGTGGATGGCCCACTTGGGAAAGCATCTTTTGAGGAAAGGACGAAAGTTACAAGGGAACAACCTGCTGATGTGAAGAAACGGCGTTTCATTGACCTGAATGAGTTAGCTCCTTTTTCAGGACATGATGAT
GGACCAGCGGCATGAGAAGTTAAACAGCACAAGGATTTTAATCTGCCTTGCACAAGAAATATGAATGCTGCATTGCCAGGGCATGCTATTGCTGTTGCAGATCATCCCATACTTTAATTGCCATGCTGAATATCTGCAATTTTCTTTCAGGAGAAAGATGACCTAATAATCCTGTAGATGCTTATTGTTGTATCACGTTC
ATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTCAATAATAAGAAACCTT
>TRINITY_DN110032_c0_g2_i4 from sample A2 / Example unspliced isoform:GGATTTTCTTCTTACTTCTTTTAAAATGTAATGTGCAGGAAAAACTTGCTTCAAGTAGAAATAAGATGGAAGCTGGGGTTGGAAAGAAACTTAATAATGATATTCTCCCGGAGCTTGAAAAGAACCAGAAGATGAAGGAAAAGGCACTGAGAAAGCAACAGAGACAAGCTATGCTTCTTGATAGCTTCATAAGCTCACAA
GGACCATCTTCAGGCCGTTCTCTTCGTTATCGTAAACCTGTTACTTACACATTTGATGAATTTGACCGATCCATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTTTACTCAGAAGATTTCCGGTTAGACCTGACTATCCAGCTGCAAATGGTAGACAGAATGGTAACCTGGAATATTCTGG
TGCGACTTCTTCCAGTTTGAGGAATGGAAGTGGAGAAACTGATGCAGAACATACAGCTGAACCTTCGAGGTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTGGAAGCTGTTTCAGATAATGAAGCAGATTTTGACAGTGACGAGGAGATAGTTGGGGAGGCGATATATGATG
ATGAATATATCAAAAGACGAAGACGTAAAAAATCATCTAGTAGCTCGGAAGGTGATGAAGAATATAGAGGAGATGATGAGAATATTGAAGAAGAAGATGATGATTATGGCAATGCTTTAAGTACTAGTGAAGAGATGGATGATTCTCGCAATGGAAAATGGGGACACGGTAAGAATATAGGATGGGCAAGTGGAAGAAAA
AGGAAGGGCCTCAAGTTGAAGTCCGTTGGTGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAGCCACTCACAACATTGATTATAGACTATATGATATGTCAAGTTCCGAGGAAGAATATGCTGAAGACGTGGAGAAGCTAGCTGGATCAAGTAATGAAATTGATATGCCTAAAAGCCAATCTGATGTAAGTGACAGTGC
TGATTATTATATGGAAAGTGAAGATTGTCTTGATGATATTACGGAAAAACGTAATGATGGAGAACAGTTTATGAAGTCCGTTAATGCTGTGGATGGCCCACTTGGGAAAGCATCTTTTGAGGAAAGGACGAAAGTTACAAGGGAACAACCTGCTGATGTGAAGAAACGGCGTTTCATTGACCTGAATGAGTTAGCTCCTT
TTTCAGGACATGATGATGGACCAGCGGCATGAGAAGTTAAACAGCACAAGGATTTTAATCTGCCTTGCACAAGAAATATGAATGCTGCATTGCCAGGGCATGCTATTGCTGTTGCAGATCATCCCATACTTTAATTGCCATGCTGAATATCTGCAATTTTCTTTCAGgtttgaattccttattaggctattggacatttg
ttgtgtagtcctgatgatttcaaagatcagctgtaagataacaagtctaagaagggtaggagattagtttaacaaaatttttgtaatgagcaacagtcattccagttgtaatctagtctaacgcgaacattttaacattgtggcatattggttaattttattgcagGAGAAAGATGACCTAATAATCCTGTAGATGCTTA
TTGTTGTATCACGTTCATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTCAATAATAAGAAACCTT
Intron 3 GTAAAGCTGG ... TGATTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.18 | 89.5 | 7 | 27 |
| A2 | 20.55 | 58 | 3 | 15 |
| A3 | 25.62 | 37.8 | 6 | 13 |
| A4 | 22.08 | 60 | 3 | 17 |
| A5 | 25 | 36 | 0 | 12 |
| A6 | 25 | 27 | 0 | 9 |
| A7 | 18.92 | 150 | 2 | 35 |
| A8 | 25.74 | 75 | 0 | 26 |
| A9 | 21.88 | 125 | 4 | 35 |
| A10 | 24.9 | 193 | 3 | 64 |
>TRINITY_DN123079_c0_g1_i2 from sample A1 / Example spliced isoformGCGGACAATTAACCCTGGGTTAATAAAGACGAGATTTGAGGGGGGGTGGGTACAGGTCCTTTGACGTATTTCACGACATTGGTCCTCAGCTTCTACTATTATTGCATCCCGTGCTTTTTCCTTCTCACCCAATTGGAGGTGGAGGCTACCTTAATTCTTTTACGGGATTCGATCTCTGCTCCATCTGAAAGGCCCTGCAT
ACTGCAAACGCTTTCATCTAATTCTCAAGGATCAATGCGCTTGTGATCATTTTTTGCACTTTCTGCCATCAATTTTGACGGCAGCAGGTTTTAAATTTCACTGATTGATTGATTTGATGATGATGGTGGAAGGAGGAGGAAACAGCTTCGATCAAGTACATGGGGAAACCAGAAACCGTCGTCCAGCAAGAGCGTGTACT
GCACGGACCCCGGCTCGCCTCGCGCCTCTCGCTCCGGTCGTCGAGCGCTCCGCTCCCCGGAGGAACATCAGCAGCAATGAAGACCGAGATTTCTGCACCGTCTTAACTACTCCTCCTCCTCCTACCCAGAAGCGCCGATGGCTCCTTCGAAGCATGTGGGAGTTGGCTTCGATTCTCAGCTTCTTTCACGTCTTTCGACC
AATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACACCAAACGGCATGCTAGGCGATATACACATACCGCTACTGAAGGCCATCCCTCCTGTAATCAGAAGTGCGCTTGGGCGTGACACATGGGTGTCTGTATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGGTAGCTGAAGGTG
AATTTCCAATTGTTGCATCTCGTGGAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGCGAGATTCGTGTTGAGCAAGAGGACATTCAACCCCATATCTATAGTTCTCTAAAGCATGGAGTCCAGATCTCAGCATTTCGTAATGAGCGGATTGGGGGGGATTCACAT
GGAACTTCCTACTGGTACGAGGATGATCCCATTATTGGTCACCGTTTATATAGGGAGATTCGGAAGATTGAGGTAAAAAATAAGACTAAGGGTAAAGGTCGTTTGTCCTTGCCAGTGGTGACCTGTCAGTGGGAAACCATAGCAACCAATTTTGATGAATTTCAGGCTGTAGCGGAAAAACTTGCTTCAAGTAGAAATAA
GATGGAAGCTGGGGTTGGAAAGAAACTTAATAATGATATTCTCCCGGAGCTTGAAAAGAACCAGAAGATGAAGGAAAAGGCACTGAGAAAGCAACAGAGACAAGCTATGCTTCTTGATAGCTTCATAAGCTCACAAGGACCATCTTCAGGCCGTTCTCTTCGTTATCGTAAACCTGTTACTTACACATTTGATGAATTTG
ACCGATCCATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTGTACTCAGAAGATTTCCGGTTAGACCTGACTATCCAGCTGCAAATGGTAGACAGAATGGTAACCTGGAATATTCTGGTGCGACTTCTTCCAGTTTGAGGAATGGAAGTGGAGAAACTGATGCAGAACATACAGCTGAACCT
TCGAGGTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTGGAAGCTGTTTCAGATAATGAAGCAGATTTTGACAGTGACGAGGAGATAGTTGGGGAGGCGATATATGATGATGAATATATCAAAAGACGAAGACGTAAAAAATCATCTAGTAGCTCGGAAGGTGATGAAGAATA
TAGAGGAGATGATGAGAATATTGAAGAAGAAGATGATGATTATGGCAATGCTTTAAGTACTAGTGAAGAGATGGACGATTCTCGCAATGGAAAATGGGGACACGGTAAGAATATAGGATGGGCAAGTGGAAGAAAAAGGAAGGGCCTCAAGTTGAAGTCCGTTGGTGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAG
CCACTCACAACATTGATTATAGACTATATGATATGTCAAGTTCCGAGGAAGAATATGCTGAAGACGTGGAGAAGCTAGCTGGATCAAGTAATGAAATTGATATGCCTAAAAGCCAATCTGATGTAAGTGACAGTGCTGATTATTATATGGAAAGTGAAGATTGTCTTGATGATATTACGGAAAAACGTAATGATGGAGAA
CAGTTTATGAAGTCCGTTAATGCTGTGGATGGCCCACTTGGGAAAGCATCTTTTGAGGAAAGGACGAAAGTTACAAGGGAACAACCTGCTGATGTGAAGAAACGGCGTTTCATTGACCTGAATGAGTTAGCTCCTTTTTCAGGACATGATGATGGACCAGCGGCATGAGAAGTTAAACAGCACAAGGATTTTAATCTGCC
TTGCACAAGAAATATGAATGCTGCATTGCCAGGGCATGCTATTGCTGTTGCAGATCATCCCATACTTAAATTGCCATGCTGAATATCTGCAATTTTCTTTCAGGTTTGAATTCCTTATTAGGCTATTGGACATTTGTTGTGTAGTCCTGATGATTTCAAAGATCAGCTGTAAGATAACAAGTCTAAGAAGGGTAGGAGAT
TAGTTTAACAAAATTTTTGTAATGAGCAACAGTCATTCCAGTTGTAATCTAGTCTAACGCGAACATTTTAACATTGTGGCATATTGGTTAATTTTATTGCAGGAGAAAGATGACCTAATAATCCTGTAGATGCTTATTGTTGTATCACGTTCATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTCAATAATAAGAAA
CCTTTCACATATCCGTGTTTCCCTTACCAGTTTGATATTTCC
>TRINITY_DN123079_c0_g1_i10 from sample A1 / Example unspliced isoform:CCCGTATGGAGGTCCCAATACTTGCAAATCATGACATGGGTATCCATGTTTTTTATAGTTTCTCTTTAAATGCATATTTTTCTTAAATTTAATCTTTCTGAGAACAACTAAGTATTATGTTCTTTATCATTTGGCCTTTCATACATGACAGCAAGAGGACATTCAACCCCATATCTATAGTTCTCTAAAGCATGGAGTCC
AGATCTCAGCATTTCGTAATGAGCGGATTGGGGGGGATTCACATGGAACTTCCTACTGgtaaagctggagtctctgatgttgcattcttgtctatagactgttgttattctatgatgaatgggggtcatctaagccttattatgagttcagttgttatgatgtcagtttaccctaaaccttaaatgattgtaaggtggaa
attctggaaatagattgtatgaaagaaataaaactgtagtatgtggttgcctgattttttgagtgggaccataggtagggccatgacgagtattaaagatcaagccccagatctagagtctgttgtgccagatccatctttttgcttcttttttgtccattccagggcgttttattcaagtatttactattgttataatt
gatgtgttcattaggttgcattctttataaaatttgtttaggaagccatgatacattgaccttaatacttatttgttggattgattttaagGTACGAGGATGATCCCATTATTGGTCACCGTTTATATAGGGAGATTCGGAAGATTGAGGTAAAAAATAAGACTAAGGGTAAAGGTCGTTTGTCCTTGCCAGTGGTGACC
TGTCAGTGGGAAACCATAGCAACCAATTTTGATGAATTTCAGGCTGTAGCGGAAAAACTTGCTTCAAGTAGAAATAAGATGGAAGCTGGGGTTGGAAAGAAACTTAATAATGATATTCTCCCGGAGCTTGAAAAGAACCAGAAGATGAAGGAAAAGGCACTGAGAAAGCAACAGAGACAAGCTATGCTTCTTGATAGCTT
CATAAGCTCACAAGGACCATCTTCAGGCCGTTCTCTTCGTTATCGTAAACCTGTTACTTACACATTTGATGAATTTGACCGATCCATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTGTACTCAGAAGATTTCCGGTTAGACCTGACTATCCAGCTGCAAATGGTAGACAGAATGGTAACC
TGGAATATTCTGGTGCGACTTCTTCCAGTTTGAGGAATGGAAGTGGAGAAACTGATGCAGAACATACAGCTGAACCTTCGAGGTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTGGAAGCTGTTTCAGATAATGAAGCAGATTTTGACAGTGACGAGGAGATAGTTGGGGAG
GCGATATATGATGATGAATATATCAAAAGACGAAGACGTAAAAAATCATCTAGTAGCTCGGAAGGTGATGAAGAATATAGAGGAGATGATGAGAATATTGAAGAAGAAGATGATGATTATGGCAATGCTTTAAGTACTAGTGAAGAGATGGACGATTCTCGCAATGGAAAATGGGGACACGGTAAGAATATAGGATGGGC
AAGTGGAAGAAAAAGGAAGGGCCTCAAGTTGAAGTCCGTTGGTGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAGCCACTCACAACATTGATTATAGACTATATGATATGTCAAGTTCCGAGGAAGAATATGCTGAAGACGTGGAGAAGCTAGCTGGATCAAGTAATGAAATTGATATGCCTAAAAGCCAATCTGATG
TAAGTGACAGTGCTGATTATTATATGGAAAGTGAAGATTGTCTTGATGATATTACGGAAAAACGTAATGATGGAGAACAGTTTATGAAGTCCGTTAATGCTGTGGATGGCCCACTTGGGAAAGCATCTTTTGAGGAAAGGACGAAAGTTACAAGGGAACAACCTGCTGATGTGAAGAAACGGCGTTTCATTGACCTGAAT
GAGTTAGCTCCTTTTTCAGGACATGATGATGGACCAGCGGCATGAGAAGTTAAACAGCACAAGGATTTTAATCTGCCTTGCACAAGAAATATGAATGCTGCATTGCCAGGGCATGCTATTGCTGTTGCAGATCATCCCATACTTAAATTGCCATGCTGAATATCTGCAATTTTCTTTCAGGTTTGAATTCCTTATTAGGC
TATTGGACATTTGTTGTGTAGTCCTGATGATTTCAAAGATCAGCTGTAAGATAACAAGTCTAAGAAGGGTAGGAGATTAGTTTAACAAAATTTTTGTAATGAGCAACAGTCATTCCAGTTGTAATCTAGTCTAACGCGAACATTTTAACATTGTGGCATATTGGTTAATTTTATTGCAGGAGAAAGATGACCTAATAATC
CTGTAGATGCTTATTGTTGTATCACGTTCATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTCAATAATAAGAAACCTTTCACATATCCGTGTTTCCCTTACCAGTTTGATATTTCC
Intron 4 GTAGGTTATA ... TCATCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.64 | 87 | 30 | 4 |
| A2 | 36.99 | 46 | 27 | 4 |
| A3 | 20 | 68 | 17 | 11 |
| A4 | 18.18 | 54 | 12 | 2 |
| A5 | 34.88 | 28 | 15 | 1 |
| A6 | 15.38 | 22 | 4 | 0 |
| A7 | 15.24 | 89 | 16 | 0 |
| A8 | 25 | 33 | 11 | 0 |
| A9 | 16.46 | 66 | 13 | 0 |
| A10 | 17.54 | 94 | 20 | 2 |
>TRINITY_DN110032_c0_g2_i1 from sample A2 / Example spliced isoformGGGCAAGGGATGCATTTGTCTCTGGTCAAAAACAGGAAACGCGGACAATTAACCCTGGGTTAATAAAGACGAGATTTGAGGGGGGGTGGGTACAGGTCCTTTGACGTATTTCACGACATTGGTCCTCAGCTTCTACTATTATTGCATCCCGTGCTTTTTCCTTCTCACCCAATTGGAGGTGGAGGCTACCTTAATTCTTT
TACGGGATTCGATCTCTGCTCCATCTGAAAGGCCCTGCATACTGCAAACGCTTTCATCTAATTCTCAAGGATCAATGCGCTTGTGATCATTTTTTGCACTTTCTGCCATCAATTTTGACGGCAGCAGGTTTTAAATTTCACTGATTGATTGATTTGATGATGATGGTGGAAGGAGGAGGAAACAGCTTCGATCAAGTACA
TGGGGAAACCAGAAACCGTCGTCCAGCAAGAGCGTGTACTGCACGGACCCCGGCTCGCCTCGCGCCTCTCGCTCCGGTCGTCGAGCGCTCCGCTCCCCGGAGGAACATCAGCAGCAATGAAGACCGAGATTTCTGCACCGTCTTAACTACTCCTCCTCCTCCTACCCAGAAGCGCCGATGGCTCCTTCGAAGCATGTGGG
AGTTGGCTTCGATTCTCAGCTTCTTTCACACTGCAGGTCTTTCGACCAATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACACCAAACGGCATGCTAGGCGATATACACATACCGCTACTGAAGGCCATCCCTCCTGTAATCAGAAGTGCGCTTGGGCGTGACACATGGGTGTCTGT
ATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGGTAGCTGAAGGTGAATTTCCAATTGTTGCATCTCGTGGAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGCGAGATTCGTGTTGAGCAAGAGGACATTCAACCCCATATCTATAGTTCTCTAAAGCATGGAG
TCCAGATCTCAGCATTTCGTAATGAGCGGATTGGGGGGGATTCACATGGAACTTCCTACTGGTACGAGGATGATCCCATTATTGGTCACCGTTTATATAGGGAGATTCGGAAGATTGAGGTAAAAAATAAGACTAAGGGTAAAGGTCGTTTGTCCTTGCCAGTGGTGACCTGTCAGTGGGAAACCATAGCAACCAATTTT
GATGAATTTCAGGCTGTAGCGGAAAAACTTGCTTCAAGTAGAAATAAGATGGAAGCTGGGGTTGGAAAGAAACTTAATAATGATATTCTCCCGGAGCTTGAAAAGAACCAGAAGATGAAGGAAAAGGCACTGAGAAAGCAACAGAGACAAGCTATGCTTCTTGATAGCTTCATAAGCTCACAAGGACCATCTTCAGGCCG
TTCTCTTCGTTATCGTAAACCTGTTACTTACACATTTGATGAATTTGACCGATCCATCAGTGAGGCAATAAAAGTAACAAAGAAGAAGCAACCCTCACCAGAGCCTTTACTCAGAAGATTTCCGGTTAGACCTGACTATCCAGCTGCAAATGGTAGACAGAATGGTAACCTGGAATATTCTGGTGCGACTTCTTCCAGTT
TGAGGAATGGAAGTGGAGAAACTGATGCAGAACATACAGCTGAACCTTCGAGGTTGACTCGCAGTGATAGATGGAGACGGAGGCCTCAAAGGTACTCAGAAAAAGAGTTTGTGGAAGCTGTTTCAGATAATGAAGCAGATTTTGACAGTGACGAGGAGATAGTTGGGGAGGCGATATATGATGATGAATATATCAAAAGA
CGAAGACGTAAAAAATCATCTAGTAGCTCGGAAGGTGATGAAGAATATAGAGGAGATGATGAGAATATTGAAGAAGAAGATGATGATTATGGCAATGCTTTAAGTACTAGTGAAGAGATGGATGATTCTCGCAATGGAAAATGGGGACACGGTAAGAATATAGGATGGGCAAGTGGAAGAAAAAGGAAGGGCCTCAAGTT
GAAGTCCGTTGGTGAACTTCAATCTGGTTTGCGGCGCAGCAAGAGAGCCACTCACAACATTGATTATAGACTATATGATATGTCAAGTTCCGAGGAAGAATATGCTGAAGACGTGGAGAAGCTAGCTGGATCAAGTAATGAAATTGATATGCCTAAAAGCCAATCTGATGTAAGTGACAGTGCTGATTATTATATGGAAA
GTGAAGATTGTCTTGATGATATTACGGAAAAACGTAATGATGGAGAACAGTTTATGAAGTCCGTTAATGCTGTGGATGGCCCACTTGGGAAAGCATCTTTTGAGGAAAGGACGAAAGTTACAAGGGAACAACCTGCTGATGTGAAGAAACGGCGTTTCATTGACCTGAATGAGTTAGCTCCTTTTTCAGGACATGATGAT
GGACCAGCGGCATGAGAAGTTAAACAGCACAAGGATTTTAATCTGCCTTGCACAAGAAATATGAATGCTGCATTGCCAGGGCATGCTATTGCTGTTGCAGATCATCCCATACTTTAATTGCCATGCTGAATATCTGCAATTTTCTTTCAGGAGAAAGATGACCTAATAATCCTGTAGATGCTTATTGTTGTATCACGTTC
ATCTCATTTAAAGAAATCGCTCATTTGGGATTTCTCAATAATAAGAAACCTT
>TRINITY_DN110032_c0_g2_i3 from sample A2 / Example unspliced isoform:GGGCAAGGGATGCATTTGTCTCTGGTCAAAAACAGGAAACGCGGACAATTAACCCTGGGTTAATAAAGACGAGATTTGAGGGGGGGTGGGTACAGGTCCTTTGACGTATTTCACGACATTGGTCCTCAGCTTCTACTATTATTGCATCCCGTGCTTTTTCCTTCTCACCCAATTGGAGGTGGAGGCTACCTTAATTCTTT
TACGGGATTCGATCTCTGCTCCATCTGAAAGGCCCTGCATACTGCAAACGCTTTCATCTAATTCTCAAGGATCAATGCGCTTGTGATCATTTTTTGCACTTTCTGCCATCAATTTTGACGGCAGCAGGTTTTAAATTTCACTGATTGATTGATTTGATGATGATGGTGGAAGGAGGAGGAAACAGCTTCGATCAAGTACA
TGGGGAAACCAGAAACCGTCGTCCAGCAAGAGCGTGTACTGCACGGACCCCGGCTCGCCTCGCGCCTCTCGCTCCGGTCGTCGAGCGCTCCGCTCCCCGGAGGAACATCAGCAGCAATGAAGACCGAGATTTCTGCACCGTCTTAACTACTCCTCCTCCTCCTACCCAGAAGCGCCGATGGCTCCTTCGAAGCATGTGGG
AGTTGGCTTCGATTCTCAGCTTCTTTCACACTGCAGGTCTTTCGACCAATTTTGAACATAAAAGTGGAGTTTACTGCCGAGGAGTTGGAAACTGCACTGATCACACCAAACGGCATGCTAGGCGATATACACATACCGCTACTGAAGGCCATCCCTCCTGTAATCAGAAGTGCGCTTGGGCGTGACACATGGGTGTCTGT
ATTATGTAAGAAGCTTAAGGATCGCTGGTACCAGgtaggttataccaataggacaggatctttgtagtttaatggtatagttcttaatctgttattcgacattgaaggcaagcaaatttttgaatgtgttgtggatgaagtagcttatttgctttcatctgtagGTAGCTGAAGGTGAATTTCCAATTGTTGCATCTCGT
GGGTGAGTGTTTTAGTATCAAGTATATTTGTATTTCATATGGATTTTATTTCTATTTGTAATCTGAGGCGTCCTTTCCTCTGTAGAGAGGAGAACATAGCATACAAAGAACTTGATCCTGGTTCCCGGGTGTTGATTTTGAAAGCACTATGCGAGATTCGTGTTGAGGTATAAAATACACATGCATTGATATTTTGGTAA
TAGCATCAAAATGAAATGATTCTATGCTTCATGCTTTGTGACTAAGTTTAAAGAAAGGCATGAATTTGTTTGTTTTCTTCCTTTTTGTTCTTTTTGGTGATAATATTTATTTTTACAAAAAAATGCATTTTTTTCTGAGTAAGAATGTTCCTGGTTGACTCACGATCAGCATCTCAGTTATGCTGTAGTACTTCCAAATA
TAGTTCATAGATAACAATATTTGTGTTTTTGATGTCC