NA ----> NA

Intron 1 ATTGTGTATT ... TATATCCAAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	0	3
A2	100	0	0	3
A3	80	1	1	4
A4	-1	0	0	0
A5	100	0	0	3
A6	100	0	0	71
A7	100	0	0	46
A8	100	0	1	74
A9	98	2	2	98
A10	95.16	3	3	59

>TRINITY_DN42248_c0_g3_i5 from sample A9 / Example spliced isoform

TCGGGATAGCTTCGTATTTCAATAGCAGTGTTATCATTTTCAATCTCATACAGTTAATATTATGCCTAAAAGACCATTATTGGTAGCATGCATAAGATATACCTAAAATGTTTCATGGAACAATATATCGAACATTGTGTATTTGACATAATACATTTGGAGTTCATGATTACAAGATGAAAGAGAATTATCTCAAACAT
ATTAAAAAA

>TRINITY_DN42248_c0_g3_i4 from sample A9 / Example unspliced isoform:

TCGGGATAGCTTCGTATTTCAATAGCAGTGTTATCATTTTCAATCTCATACAGTTAATATTATGCCTAAAAGACCATTATTGGTAGCATGCATAAGATATACCTAAAATGTTTCATGGAACAATATATCGAACattgtgtattgtgtatttgacataataccccactcaatttcgggcgcacgtgctgcagtaatattgt
tataatgtcatgcagttcatatagatgccctgctctgtatggctattgcccatgtgggtataaactgagttgtgaagtaactcactaattaaatatcacttatatattttttcgcagttgggtagttgcttccctgaaggtaatccaccagttatttggtttccatgctccttatccctagctagaacctctcaaggtgc
caaaatagctctggtgtaaagcatgcatgaacaatatatccaacATTGTGTATTTGACATAATACATTTGGAGTTCATGATTACAAGATGAAAGAGAATTATCTCAAACATATTAAAAAAGATGTTGTGGGCCCGTGGCATATAAGAGTTCACGTGTTTACCAAATTTTAAAGGTGTACAATATTTTTCGTGGTATTGCT
TGTTGTTGTGTATTCCATCTCATGTGGGGGTGTTTTATACAAAGGAAGTAGGATTTTCAAGCTTTTTGTATAATGCAAAAGATTCATCTTAATAAAAACCAACTATGTTTTCAATATTGATTTGAAGAATCATGTCATAAAAAACAAAGCAACTAAATTTTCAATATTGATTTGAACAATCATGTCATAAAAACCAATAT
GGTTGCATTGATTTTGACAACCATATTTATTACAAAATAATCTGGTGCAGTGATTACAAAATTGATACAATGCAAAGCAATCAATGGACATTGGGCATTCTGTTTCATTAGTG