sp|P51091|LDOX_MALDO ----> Leucoanthocyanidin dioxygenase

Intron 1 GTATGTTCAT ... TGATTAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.72	8.6	17	19.8
A2	66.94	6.4	14	11.8
A3	41.98	8.2	4	7.2
A4	32.8	11.2	6	4
A5	59.86	7.4	4	17.4
A6	23.28	26	10	5.8
A7	16.84	56	14.6	8.4
A8	22.4	40.6	19.6	3.8
A9	15.13	54.2	12.2	7.2
A10	8.82	52.8	5.2	5.6

>TRINITY_DN117514_c0_g1_i2 from sample A1 / Example spliced isoform

GAAGCTATGGATTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTGGGCCTAGAGAGTGAAAACTCTCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCT
GATCCCAACGTCCTGATCATTATTCTTCATGACCAACCCCGGGGCTGCAAATTCGCAAAGATGGAGCTCTGATTGATGTCCAGTGCGTTCCAGGCACTTTGGTTGTGAATATTGCTGATCATATGGAGATAGTGAGTAACGGGAAATACAAGAGCATTGAACGCAGGGGCGTGGTGCACAAGGATCGCTCAAGAATGTCA
TGGTCCGTGTTTTGAGCTCCACCGCGTGATGTGGTGCTCTTACGGTGT

>TRINITY_DN117514_c0_g1_i1 from sample A1 / Example unspliced isoform:

TTGAATCATAACGGATTCTCGATCGAAAAGCCAAATTTGAATTTACGAACGGAAAAATCCTTTAATGGAATGGAATCCGATGGTGATCGTGTAGTTTGAAATTCAACCGTTAGGTTACTTCCATATTTGTCGAAAAAGCTACTTTCATATTCCTTGAAAAAGCTTCTATCTTACCTGGTTAGGCTACTTTGAAAAAGCTT
TCTATCAAACCTGGTTAGGCTACTTTGAAAAAGCTTTCTATCATACCTGGTTAGGTTACTTACAGCAACGATCTAGCCTCCTGCAACATGATCATTTCTGCAAGGATCAATTTGACACCCTCGCTGCACAAATTTCAAGGGCTGCAGAGAATTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTCTCCTATT
GCTCGAGTGCAACGTCTCCCCTTCAAGAGAAGGAAGCCTACGCTAACGATGCACAGAACACCTTCGGTTATGGCAGCAAAGTCGGATATTCGCCCGATTCAGAGGCTATATTGGATTGGGGTGACTATTTTCATAACGCTATTTGGCCTCCTGCTATGCGGGACCTGAGCAGATGGCCCATACAACTGTCTGATTTCACT
TACACTCTCATTTCCATTCAAAAGTTTGCTCTGTGTATACTGTATTTCTGTGGCGATGGGGGAAGCCTTCCCTATAAGATCTGATGAGAGATTTTGTGGTCGCAGGGAAGCTATGGATTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTGGGCCTAGAGAGTGAAAACTC
TCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCTGATCCCAACGTCCTGATCATTATTCTTCATGACCAAACCCCGGGGCTGCAAATTCGCAAAGATGGAGCTCTGATTGATGTCCAGTGCGTTCCAG
GCACTTTGGTTGTGAATATTGCTGATCATATGGAGgtatgttcataataacgaccaatgtaagcttagatccaatgctttaggaaagaagattgatgttactgtagtaggttaataagttgtatgttgattagcagATAGTGAGTAACGGGAAATACAAGAGCATTGAACGCAGGGGCGTGGTGCACAAGGATCGCTCAA
GAATGTCATGGTCCGTGTTTTGAGCTCCACCGCGTGATGTGGTGCTCTTACGGTGT

Intron 2 GTCTGATTTC ... GTGGTCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	48.72	40	35	41
A2	41.18	15	5	16
A3	70	6	7	21
A4	50	9	4	14
A5	55.39	8.5	6	15
A6	65.72	11.5	20	24
A7	51.89	55	29	89.6
A8	55.22	30	29	45
A9	44.34	59	29	65
A10	48.22	53.5	22	77.6

>TRINITY_DN117514_c0_g1_i4 from sample A1 / Example spliced isoform

TTGAATCATAACGGATTCTCGATCGAAAAGCCAAATTTGAATTTACGAACGGAAAAATCCTTTAATGGAATGGAATCCGATGGTGATCGTGTAGTTTGAAATTCAACCGTTAGGTTACTTCCATATTTGTCGAAAAAGCTACTTTCATATTCCTTGAAAAAGCTTCTATCTTACCTGGTTAGGCTACTTTGAAAAAGCTT
TCTATCAAACCTGGTTAGGCTACTTTGAAAAATGCTTTCTATCATACCTGGTTAGGTTACTTACAGCAACGATCTAGCCTCCTGCAACATGATCATTTCTGCAAGGATCAATTTGACACCCTCGCTGCACAAATTTCAAGGGCTGCAGAGAATTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTCTCCTAT
TGCTCGAGTGCAACGTCTCCCCTTCAAGAGAAGGAAGCCTACGCTAACGATGCACAGAACACCTTCGGTTATGGCAGCAAAGTCGGATATTCGCCCGATTCAGAGGCTATATTGGATTGGGGTGACTATTTTCATAACGCTATTTGGCCTCCTGCTATGCGGGACCTGAGCAGATGGCCCATACAACTGGAAGCTATGGA
TTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTGGGCCTAGAGAGTGAAAACTCTCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCTGATCCCAACGT
CCTGATCATTATTCTTCATGACCAAACCCCGGGGCTGCAAATTCGCAAAGATGGAGCTCTGATTGATGTCCAGTGCGTTCCAGGCACTTTGGTTGTGAATATTGCTGATCATATGGAGGTATGTTCATAATAACGACCAATGTAAGCTTAGATCCAATGCTTTAGGAAAGAAGATTGATGTTACTGTAGTAGGTTAATAA
GTTGTATGTTGATTAGCAGATAGTGAGTAACGGGAAATACAAGAGCATTGAACGCAGGGGCGTGGTGCACAAGGATCGCTCAAGAATGTCATGGTCCGTGTTTTGAGCTCCACCGCGTGATGTGGTGCTCTTACGGTGT

>TRINITY_DN117514_c0_g1_i1 from sample A1 / Example unspliced isoform:

TTGAATCATAACGGATTCTCGATCGAAAAGCCAAATTTGAATTTACGAACGGAAAAATCCTTTAATGGAATGGAATCCGATGGTGATCGTGTAGTTTGAAATTCAACCGTTAGGTTACTTCCATATTTGTCGAAAAAGCTACTTTCATATTCCTTGAAAAAGCTTCTATCTTACCTGGTTAGGCTACTTTGAAAAAGCTT
TCTATCAAACCTGGTTAGGCTACTTTGAAAAAGCTTTCTATCATACCTGGTTAGGTTACTTACAGCAACGATCTAGCCTCCTGCAACATGATCATTTCTGCAAGGATCAATTTGACACCCTCGCTGCACAAATTTCAAGGGCTGCAGAGAATTGGGGCTTCTTCCAGGTCATAAATCATGGCATCACCGACTCTCCTATT
GCTCGAGTGCAACGTCTCCCCTTCAAGAGAAGGAAGCCTACGCTAACGATGCACAGAACACCTTCGGTTATGGCAGCAAAGTCGGATATTCGCCCGATTCAGAGGCTATATTGGATTGGGGTGACTATTTTCATAACGCTATTTGGCCTCCTGCTATGCGGGACCTGAGCAGATGGCCCATACAACTgtctgatttcact
tacactctcatttccattcaaaagtttgctctgtgtatactgtatttctgtggcgatgggggaagccttccctataagatctgatgagagattttgtggtcgcagGGAAGCTATGGATTAATACGAGAGTTAATGTACGAGTTATTCGAAGTGTTGATCAAGGTACTTTCGCGTGATCTGGGCCTAGAGAGTGAAAACTC
TCCGAACGAGAGCGTGGGAGGGAAGAGGAAGGGGATGTATATAGGAATGAATTACTACCCACCATGTCCTCAGCCGAATCTGGTGGTAGTACTGGCTCCCCATTCTGATCCCAACGTCCTGATCATTATTCTTCATGACCAAACCCCGGGGCTGCAAATTCGCAAAGATGGAGCTCTGATTGATGTCCAGTGCGTTCCAG
GCACTTTGGTTGTGAATATTGCTGATCATATGGAGGTATGTTCATAATAACGACCAATGTAAGCTTAGATCCAATGCTTTAGGAAAGAAGATTGATGTTACTGTAGTAGGTTAATAAGTTGTATGTTGATTAGCAGATAGTGAGTAACGGGAAATACAAGAGCATTGAACGCAGGGGCGTGGTGCACAAGGATCGCTCAA
GAATGTCATGGTCCGTGTTTTGAGCTCCACCGCGTGATGTGGTGCTCTTACGGTGT