sp|O24629|SIGA_ARATH ----> RNA polymerase sigma factor sigA
Intron 1 GTAAAGACCA ... TTCCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.35 | 23.3 | 2 | 4.5 |
| A2 | 12.5 | 25.7 | 2 | 4.5 |
| A3 | 4.17 | 9.7 | 2 | 0.5 |
| A4 | 29.17 | 6 | 2.5 | 2.5 |
| A5 | 33.33 | 2 | 2 | 1 |
| A6 | 12.72 | 32.7 | 1.5 | 5.5 |
| A7 | 13.29 | 49 | 3.5 | 8.5 |
| A8 | 11.9 | 32.2 | 7 | 5 |
| A9 | 17.02 | 55.8 | 5.5 | 12.5 |
| A10 | 11.95 | 48.5 | 8 | 7 |
>TRINITY_DN43091_c0_g1_i6 from sample A9 / Example spliced isoformCGAAGAAACTTTATTCTATTTATTCTGTCTTCTTCCATCTGGCATTTTGGTTTTAGAATCCTGCAAACTTAAAAAAGTTTTGCAAAATGCAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATGCAAGTGATACTTTGCATAGTTATATTGCAGATACTAATCTTGAAAATCAG
CCATGGTTTACTGTAGAAAGGAACGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTTTATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGGCTTGACAAACAGCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTA
CGTTACAAATATTGTTGGTTGCAAGTATCGAACCACAGTATAGTACACCTATAGTACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTC
CCTGTCCTTTCTCTTTGCAATTGTGGCCACGCATTTCTCTGTTACACACTTTAAAGTTTGAGGTTTAATTAACGTATGAAATGTCTTGAGAATGGTACAGCATTAATATGATAATGCATAAAATTGTACTGCTGTTTGAATATGGCAGATATTGGTTCAGTTCAATTTCAAGTTTTGTGTTGGATAGTGTAACATGGGAT
CCATTATACTGTTAAACCAAAAATTTATATTTATTTTTCAAGAATGGTTACCGAATAGCCATTTTAAGTACCAAACACGACACTTGTATTGATATATAGTGCTATTACTATAGGCCCCTTGTACATTTTCCAAAGATGCCAATATCTAGAGTCTAGACAGAGGATTGTGTGGGTACACATGTGTTCTTATCCAATATAGA
AGATACAGCTGAGCGACAAGCTATTACGAAGTTTAAAGCTGTAGCAAGGCTTCTATAGCTGAATGGGAGTCTTGAACCTCTGTCCACGAATGTTATCAATGTTAAATTTTGTTCATATATATTTCCAATTTAATAGATTTGATTTACAAACAAAAGC
>TRINITY_DN43091_c0_g1_i12 from sample A9 / Example unspliced isoform:GAAACTCCCAACCAAAATAGTACTAACAGATACCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACA
GAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTAC
TAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGT
TGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCC
ATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTAGG
ATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGTTGC
TACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTT
GAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATGCAAGTGATACTTTGCATAGTgtaaagaccagccaattgttgtgattaactattttaattgtttcaagaaattcttaaaaattgca
actctgaaaattttgtttcagttcacagatattaagaaatcacaattatgaaatatgtcactcctatagcttcttagttttttcgaggtcagtgagctttgttttccttgcagTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGTAAGTTTTGTCAAGTGTACTAAA
TATTTGTTGAGAAAGTATGATCATTTTCAAAAAATTCAAGGAGCTGCTGAAAAGATGCTCTTAATTTTTGAATGTTTGTTATCATTATGCGATGCAGGAG
Intron 2 GCAAGTGATA ... TTCCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.52 | 25 | 1.6 | 5.2 |
| A2 | 7.5 | 26 | 2.4 | 5.4 |
| A3 | 18.79 | 10 | 2.6 | 0.6 |
| A4 | 37.33 | 6 | 3.6 | 2.6 |
| A5 | 33.33 | 2 | 1 | 1 |
| A6 | 4.76 | 37 | 2 | 6.4 |
| A7 | 5.62 | 49 | 3.2 | 9.8 |
| A8 | 14.95 | 35 | 6.6 | 5.8 |
| A9 | 7.78 | 63 | 5.8 | 14 |
| A10 | 17.29 | 49 | 10.8 | 7.8 |
>TRINITY_DN98790_c0_g1_i2 from sample A4 / Example spliced isoformGCCGATGCCACCTCCAGAATGAGCGATCGACTCTTTACGGGAAAAGATTTAGTTTGAAAATTTATCAGCGAAGGAAATTTAAGCTCGTCACAGCATATAGGGAAATATGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTAT
CATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTAC
AGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAA
GAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAA
AGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAG
TCAAATTAGGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTA
ATTGGGCTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATACGTCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGA
CCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATA
AATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTTTATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATT
TTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCA
>TRINITY_DN98790_c0_g1_i8 from sample A4 / Example unspliced isoform:GTGAAAAATGCAACAGAGGTACGAAGAAACTTTATTCTATTTATTCTGTCTTCTTCCATCTGGCATTTTGGTTTTAGAATCCTGCAAACTTAAAAAAGTTTTGCAAAATGCAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATgcaagtgatactttgcatagtgtaaagacc
agccaattgttgtgattaactattttaattgtttcaagaaattcttaaaaattgcaactctgaaaattttgtttcagttcacagatattaagaaatcacaattatgaaatatgtcactcctatagcttcttagttttttcgaggtcagtgagctttgttttccttgcagTATATTGCAGATACTAATCTTGAAAATCAGC
CATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTTTATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAA
AAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCA
Intron 3 GTGCACCTTT ... TCCGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.67 | 22 | 4 | 12 |
| A2 | 27.87 | 22 | 8 | 9 |
| A3 | 43.59 | 11 | 6 | 11 |
| A4 | 24.39 | 31 | 12 | 8 |
| A5 | 24.32 | 14 | 5 | 4 |
| A6 | 16.67 | 5 | 0 | 2 |
| A7 | 21.21 | 13 | 0 | 7 |
| A8 | 27.27 | 8 | 3 | 3 |
| A9 | 27.27 | 20 | 9 | 6 |
| A10 | 16.13 | 13 | 0 | 5 |
>TRINITY_DN107110_c0_g1_i3 from sample A3 / Example spliced isoformCAGATACCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAAT
AAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTG
CAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAA
TCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAA
GCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTAGGATATGAACCATCAGATGCACAATGGG
CTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGTTGCTACATGGCATTGAGAAATTTGATTCC
TCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTTGAGAGAATTGCGACAACCCTAAGCAT
GTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATGCAAGTGATACTTTGCATAGTTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGA
CATTGACCAAGAGAGAGCAAATGATAATCAGGCTATATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGA
CAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTACGTTACAAATATTGTTGGATGCAAGTATCGAACCACAGTATAGTACACCTATAGTACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCA
AGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTCCCTGTCCTTTCTCTTTGCAATTGTGGCCACGCATTTCTCTGTTACACACTTTAAAGTTTGAGGTTTAAGTAACGTATGAAATGTCTTGAGAATGGTACAGCATTAATATGATAATGCATAAAATTGTACTGCTGTTTGAATATGGCAGATATTGG
TTCAGTTCAATTTCAAGTTTTGTGTTGGATAGTGTAACATGGGATCCATTATACTGTTAAACCAAAAATTTATATTTATTTTTCAAGA
>TRINITY_DN107110_c0_g1_i1 from sample A3 / Example unspliced isoform:CAGATACCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAAT
AAGgtgcacctttgtgccagtaaatccccattaagtgaatctataaagtaggagaattctggttttattaaagtgtgaaaacaaaagatctaatgtggagaatgatattatctgaatttttggcatccgttgcagAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCA
TCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAG
GCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAA
GCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGC
TAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTAGGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAA
ACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGTTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAGGGTATCACAAGAGCGATCGC
TGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCC
ATGACAGATTCGACAACAATGCAAGTGATACTTTGCATAGTTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTATATTATGGTCTGGATACACACAAGAGCTGTACA
TGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTACGTTACAAATATTGTTGGATGCA
AGTATCGAACCACAGTATAGTACACCTATAGTACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTCCCTGTCCTTTCTCTTTGCAATTG
TGGCCACGCATTTCTCTGTTACACACTTTAAAGTTTGAGGTTTAAGTAACGTATGAAATGTCTTGAGAATGGTACAGCATTAATATGATAATGCATAAAATTGTACTGCTGTTTGAATATGGCAGATATTGGTTCAGTTCAATTTCAAGTTTTGTGTTGGATAGTGTAACATGGGATCCATTATACTGTTAAACCAAAAA
TTTATATTTATTTTTCAAGA
Intron 4 GTTAAAATAC ... ATTTACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.77 | 6 | 7.3 | 8.7 |
| A2 | 72.2 | 7.7 | 20.3 | 19.7 |
| A3 | 82.81 | 1.7 | 8 | 10 |
| A4 | 76.39 | 5 | 10 | 19.3 |
| A5 | 67.25 | 3.7 | 4.3 | 10.7 |
| A6 | 91.67 | 0.3 | 3 | 3 |
| A7 | 72.69 | 2.3 | 6.7 | 6 |
| A8 | 64.45 | 3 | 6.3 | 4.7 |
| A9 | 85.22 | 4 | 20 | 24.7 |
| A10 | 71.08 | 5.3 | 12 | 15.3 |
>TRINITY_DN45149_c0_g1_i3 from sample A7 / Example spliced isoformGTGGACGTACCAACATGCTCGAGATTTATGCGTATCCCACGTCCTCATGCTTTGTGCTGACGTGTCGCGGTATAAACCACAGTTCATGCATATCCTCATCTGCCAGTTCTCCAGGTGATATATCAAGAAACTCCCAACTAAAATAGTACTAACAGATACCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTT
TCCAACAGCCGATGCCACCTCCAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGA
AAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCA
TGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGG
AAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTT
ACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTAGGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAA
TATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGTTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAA
TAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAAC
AATGCAAGTGATACTTTGCATAGTTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTATATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAA
GGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTACGTTACAAATATTGTTGGATGCAAGTATCGAACCACAGTA
TAGTACACCTATAGTACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTCCCTGTCCTTTCTCTTTGCAATTGTGGCCACGCATTTCTCT
GTTACACACTTTAAAGTTTGAGGTTTAAGTAACGTATGAAATGTCTTGAGAATGGTACAGCATTAATATGATAATGCATAAAATTGTACTGCTGTTTGAATATGGCAGATATTGGTTCAGTTCAATTTCAAGTTTTGTGTTGGATAGTGTAACATGGGATCCATTATACTGTTAAACCAAAAATTTATATTTATTTTTCA
AGAATGGTTACCGAATAGCCATTTTAAGTACCAAACACGACACTTGTATTGATATATAGTGCTATTACTATAGGCCCCTTGTACATTTTCCAAAGATGCCAATATCTAGAGTCTAGACAGAGGATTGTGTGGGTACACATGTGTTCTTATCCAATATAGAAGATACAGCTGAGCGACAAGCTATTACGAAGTTTAAAGCT
GTAGCAAGGCTTCTATAGCTGAATGGGAGTCTTGAACCTCTGTCCACG
>TRINITY_DN45149_c0_g1_i6 from sample A7 / Example unspliced isoform:GTGGACGTACCAACATGCTCGAGATTTATGCGTATCCCACGTCCTCATGCTTTGTGCTGACGTGTCGCGGTATAAACCACAGTTCATGCATATCCTCATCTGCCAGTTCTCCAGGTGATATATCAAGAAACTCCCAACTAAAATAGTACTAACAGATACCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTT
TCCAACAGCCGATGCCACCTCCAGgttaaaatacattcttccttgcattcgatttacacagGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACC
GATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAA
AACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCA
AGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGAC
AGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTAGGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGG
AGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGTTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAG
GGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGAT
TTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATGCAAGTGATACTTTGCATAGTTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTATATTATGGTCTGG
ATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTACGT
TACAAATATTGTTGGATGCAAGTATCGAACCACAGTATAGTACACCTATAGTACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTCCCT
GTCCTTTCTCTTTGCAATTGTGGCCACGCATTTCTCTGTTACACACTTTAAAGTTTGAGGTTTAAGTAACGTATGAAATGTCTTGAGAATGGTACAGCATTAATATGATAATGCATAAAATTGTACTGCTGTTTGAATATGGCAGATATTGGTTCAGTTCAATTTCAAGTTTTGTGTTGGATAGTGTAACATGGGATCCA
TTATACTGTTAAACCAAAAATTTATATTTATTTTTCAAGAATGGTTACCGAATAGCCATTTTAAGTACCAAACACGACACTTGTATTGATATATAGTGCTATTACTATAGGCCCCTTGTACATTTTCCAAAGATGCCAATATCTAGAGTCTAGACAGAGGATTGTGTGGGTACACATGTGTTCTTATCCAATATAGAAGA
TACAGCTGAGCGACAAGCTATTACGAAGTTTAAAGCTGTAGCAAGGCTTCTATAGCTGAATGGGAGTCTTGAACCTCTGTCCACG
Intron 5 GTACGAAGAA ... CAAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 20 | 7 | 3 |
| A2 | 31.54 | 19.7 | 5 | 13 |
| A3 | 21.05 | 15 | 5 | 3 |
| A4 | 40 | 9 | 5 | 7 |
| A5 | 6.67 | 7 | 0 | 1 |
| A6 | 22.67 | 29 | 7 | 10 |
| A7 | 23.58 | 47 | 12 | 17 |
| A8 | 26.98 | 43.3 | 17 | 15 |
| A9 | 26 | 74 | 23 | 29 |
| A10 | 26.5 | 41.7 | 10 | 20 |
>TRINITY_DN42127_c0_g2_i2 from sample A8 / Example spliced isoformAAGAAACTCCCAACTAAAATAGTACTAACAGATACCTGTGATCCTTGAGCTTTACTACGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGA
CAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACT
ACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTC
GTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAAT
CCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTA
GGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGTACTTACACATACCGT
GTTCAAAAGGTCAATTGGTACAAAAGCTTATGGAACAACCAATGAGGGCTTAATTGGGTTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGA
GATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATGCAAGTGATACTTTGCATAGTTAT
ATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTATATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGT
GAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACAGCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTACGTTACAAATATTGTTGGATGCAAGTATCGAACCACAGTATAGTACACCTATAGTACACCTCCTTGC
ATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTCCCTGTCCTTTCTCTTTGCAATTGTGGCCACGCATTTCTCTGTTACACACTTTAAAGTTTGAGGTTTA
AGTAACGTATGAAATGTCTTGAGAATGGTACAGCATTAATATGATAATGCATAAAATTGTACTGCTGTTTGAATATGGCAGATATTGGTTCAGTTCAATTTCAAGTTTTGTGTTGGATAGTGTAACATGGGATCCATTATACTGTTAAACCAAAAATTTATATTTATTTTTCAAGAATGGTTACCGAATAGCCATTTTAA
GTACCAAACACGACACTTGTATTGATATATAGTGCTATTACTATAGGCCCCTTGTACATTTTCCAAAGATGCCAATATCTAGAGTCTAGACAGAGGATTGTGTGGGTACACATGTGTTCTTATCCAATATAGAAGATACAGCTGAGCGACAAGCTATTACGAAGTTTAAAGCTGTAGCAAGGCTTCTATAGCTGAATGGG
AGTCTTGAACCTCTATCCACGAATGTTATCAATGTTAAATTTTGTTCATATATTTCCAATTTAATAGATTTGATTTACAA
>TRINITY_DN42127_c0_g2_i5 from sample A8 / Example unspliced isoform:AAGAAACTCCCAACTAAAATAGTACTAACAGATACCTGTGATCCTTGAGCTTTACTACGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGA
CAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACT
ACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTC
GTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAAT
CCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTA
GGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGTT
GCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCAC
TTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGgtacgaagaaactttattattctatttattctgtcttcttccatctggcattttggttttagaatcctgcaaacttaaaaaagttttgcaaaatgcagGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACA
GATTCGACAACAATGCAAGTGATACTTTGCATAGTTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTATATTATGGTCTGGATACACACAAGAGCTGTACATGGGAA
GATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACAGCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTACGTTACAAATATTGTTGGATGCAAGTATC
GAACCACAGTATAGTACACCTATAGTACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTCCCTGTCCTTTCTCTTTGCAATTGTGGCCA
CGCATTTCTCTGTTACACACTTTAAAGTTTGAGGTTTAAGTAACGTATGAAATGTCTTGAGAATGGTACAGCATTAATATGATAATGCATAAAATTGTACTGCTGTTTGAATATGGCAGATATTGGTTCAGTTCAATTTCAAGTTTTGTGTTGGATAGTGTAACATGGGATCCATTATACTGTTAAACCAAAAATTTATA
TTTATTTTTCAAGAATGGTTACCGAATAGCCATTTTAAGTACCAAACACGACACTTGTATTGATATATAGTGCTATTACTATAGGCCCCTTGTACATTTTCCAAAGATGCCAATATCTAGAGTCTAGACAGAGGATTGTGTGGGTACACATGTGTTCTTATCCAATATAGAAGATACAGCTGAGCGACAAGCTATTACGA
AGTTTAAAGCTGTAGCAAGGCTTCTATAGCTGAATGGGAGTCTTGAACCTCTATCCACGAATGTTATCAATGTTAAATTTTGTTCATATATTTCCAATTTAATAGATTTGATTTACAA
Intron 6 GTAATCTGAT ... TTTCTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70 | 3 | 7 | 7 |
| A2 | 39.68 | 19 | 16 | 9 |
| A3 | 45.45 | 6 | 3 | 7 |
| A4 | 42.86 | 8 | 2 | 10 |
| A5 | 46.67 | 4 | 3 | 4 |
| A6 | 25 | 3 | 0 | 2 |
| A7 | 23.81 | 8 | 4 | 1 |
| A8 | 28.57 | 5 | 1 | 3 |
| A9 | 28.57 | 20 | 4 | 12 |
| A10 | 37.93 | 9 | 3 | 8 |
>TRINITY_DN110587_c0_g1_i8 from sample A2 / Example spliced isoformCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTACATTGGCTACCAAGAATGAGCGATCGACTCTTTACGGGAAAAGATTTAGTTTGAAAATTTATCAGCGAAGGAAATTTAAGCTCGTCACAGCATATAGGGAAATATGTTAAAATACATTCTTCCTTGCATTCG
ATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACG
CTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCAT
CTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCT
GGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGT
TGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTAGGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTG
TCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGCTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATACGTCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACT
CACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATGCAAGTGATAC
TTTGCATAGTTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAACGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTTTATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGT
CCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCAGCTTCTACGTTACAAATATTGTTGGATGCAAGTATCGAACCACAGTATAGTACACCTATAG
TACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTCACTCTCCACCTGCTCTCCCTGTCCTTTCTCTTTGCAATTGTGGCCACGCATTTCTCTGTTACACACTTTAA
AGTTTGAGGTTTAATTAACGTATGAAATGTCTTGAG
>TRINITY_DN110587_c0_g1_i15 from sample A2 / Example unspliced isoform:CTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTACATTGGCTACCAAGAATGAGCGATCGACTCTTTACGGGAAAAGATTTAGTTTGAAAATTTATCAGCGAAGGAAATTTAAGCTCGTCACAGCATATAGGGAAATATgtaatctgattaacggttcaagattca
tacctttctatcatttttgtttcgaaagtcgctcgcttcgagttttatgctctttccttttattcggagtgaataaatatctccgtatgcttttatatcttgttcatgttactcgttatgcagtacaacctgcagaagtttcataaccttttggacattatactgtatatactggctttaattgattctgttattgttga
attcttgctggaatagtagacaagaactgtcaaatttgcatttacatcatatatttccctttaatgagtattttattcgtttgaagtgcgactgaagctttttcttgtagGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGT
ATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTT
ACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGG
AAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTT
AAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTTGC
CAATATTTTCTGAACCCACTCTGTACAGTTAGAATTACTTGTGCACTGCCTGGAAATAAAGATAAGTTTGGATAGGAGAATTGCATAGTTTAGGCTTAAGTACGAATTTGTCAGTCCCTTGCTGTGCTGGACCTATTTACTTATAGGTCGTACTACTTAGTCAAACTTGGTCCAACTTTACTGCTAGCATAATGCATTGC
TGGTTATTATTAGCCAGCAATTTGATCAAACCAGGCTTTGGAATGTTAATCATAG
Intron 7 GTACATTGGC ... TTTCTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.71 | 9 | 3 | 7 |
| A2 | 42.22 | 13 | 10 | 9 |
| A3 | 27.27 | 12 | 2 | 7 |
| A4 | 29.73 | 13 | 1 | 10 |
| A5 | 40 | 3 | 0 | 4 |
| A6 | 25 | 3 | 0 | 2 |
| A7 | 38.46 | 4 | 4 | 1 |
| A8 | 40 | 3 | 1 | 3 |
| A9 | 29.82 | 20 | 5 | 12 |
| A10 | 29.73 | 13 | 3 | 8 |
>TRINITY_DN110587_c0_g1_i5 from sample A2 / Example spliced isoformCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTG
GAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAA
GGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGT
TGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGAT
CCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAGTCAAATTAGGATATGAACCATCAGATGCACAATGGGCTGCTTC
GATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTAATTGGGCTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAG
GTTTCAGGCTTTCAACATATGTGTATTGGTGGATTCGCCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGACCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTC
AAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAACGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAAT
CAGGCTTTATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTA
AGTTGATCCAGCTTCTACGTTACAAATATTGTTGGATGCAAGTATCGAACCACAGTATAGTACACCTATAGTACACCTCCTTGCATACAGATTGTACATTTCCTGTAATTCATATTTTTGTAGGTGATTTTTAGATGATAAAATGTCGATAAGCTACACATCAAATATTTCAAGTAGCTTGTCTCCTCCACCCCTCTTTC
ACTCTCCACCTGCTCTCCCTGTCCTTTCTCTTTGCAATTGTGGCCACGCATTTCTCTGTTACACACTTTAAAGTTTGAGGTTTAATTAACGTATGAAATGTCTTGAG
>TRINITY_DN110587_c0_g1_i15 from sample A2 / Example unspliced isoform:CTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGgtacattggctaccaagaatgagcgatcgactctttacgggaaaagatttagtttgaaaatttatcagcgaaggaaatttaagctcgtcacagcatatagggaaatatgtaatctgattaacggttcaagattca
tacctttctatcatttttgtttcgaaagtcgctcgcttcgagttttatgctctttccttttattcggagtgaataaatatctccgtatgcttttatatcttgttcatgttactcgttatgcagtacaacctgcagaagtttcataaccttttggacattatactgtatatactggctttaattgattctgttattgttga
attcttgctggaatagtagacaagaactgtcaaatttgcatttacatcatatatttccctttaatgagtattttattcgtttgaagtgcgactgaagctttttcttgtagGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGT
ATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTT
ACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGG
AAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTT
AAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTTGC
CAATATTTTCTGAACCCACTCTGTACAGTTAGAATTACTTGTGCACTGCCTGGAAATAAAGATAAGTTTGGATAGGAGAATTGCATAGTTTAGGCTTAAGTACGAATTTGTCAGTCCCTTGCTGTGCTGGACCTATTTACTTATAGGTCGTACTACTTAGTCAAACTTGGTCCAACTTTACTGCTAGCATAATGCATTGC
TGGTTATTATTAGCCAGCAATTTGATCAAACCAGGCTTTGGAATGTTAATCATAG
Intron 8 GTTCAAGATT ... TTTCTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.33 | 5 | 7 | 7 |
| A2 | 34.48 | 19 | 11 | 9 |
| A3 | 42.86 | 6 | 2 | 7 |
| A4 | 37.5 | 10 | 2 | 10 |
| A5 | 36.84 | 6 | 3 | 4 |
| A6 | 33.33 | 2 | 0 | 2 |
| A7 | 11.11 | 4 | 0 | 1 |
| A8 | 22.22 | 7 | 1 | 3 |
| A9 | 27.27 | 20 | 3 | 12 |
| A10 | 35.48 | 10 | 3 | 8 |
>TRINITY_DN110587_c0_g1_i13 from sample A2 / Example spliced isoformCTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGAATGAGCGATCGACTCTTTACGGGAAAAGATTTAGTTTGAAAATTTATCAGCGAAGGAAATTTAAGCTCGTCACAGCATATAGGGAAATATGTAATCTGATTAACGGTTAAAATACATTCTTCCTTGCATTCGAT
TTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCT
CTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCT
TCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGG
GAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTG
TACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTTGCCAATATTTTCTGAACCCACTCTGTACAGTTAGAATTACTTGTGCACTGCCTGGAAATAAAGATAAGTTTGGATAGGAGAATTGCATAGTTTAGGCTTAAGTACGAATTTGTCAGTCCCTTGCTGTGCTGGACCTATTTA
CTTATAGGTCGTACTACTTAGTCAAACTTGGTCCAACTTTACTGCTAGCATAATGCATTGCTGGTTATTATTAGCCAGCAATTTGATCAAACCAGGCTTTGGAATGTTAATCATAG
>TRINITY_DN110587_c0_g1_i15 from sample A2 / Example unspliced isoform:CTGTGTTCCTTGAGCTTTACTTCGCAAGGCACGGATAACTTTCCAACAGCCGATGCCACCTCCAGGTACATTGGCTACCAAGAATGAGCGATCGACTCTTTACGGGAAAAGATTTAGTTTGAAAATTTATCAGCGAAGGAAATTTAAGCTCGTCACAGCATATAGGGAAATATGTAATCTGATTAACGgttcaagattca
tacctttctatcatttttgtttcgaaagtcgctcgcttcgagttttatgctctttccttttattcggagtgaataaatatctccgtatgcttttatatcttgttcatgttactcgttatgcagtacaacctgcagaagtttcataaccttttggacattatactgtatatactggctttaattgattctgttattgttga
attcttgctggaatagtagacaagaactgtcaaatttgcatttacatcatatatttccctttaatgagtattttattcgtttgaagtgcgactgaagctttttcttgtagGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGT
ATCATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTT
ACAGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGG
AAGAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTT
AAAGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTTGC
CAATATTTTCTGAACCCACTCTGTACAGTTAGAATTACTTGTGCACTGCCTGGAAATAAAGATAAGTTTGGATAGGAGAATTGCATAGTTTAGGCTTAAGTACGAATTTGTCAGTCCCTTGCTGTGCTGGACCTATTTACTTATAGGTCGTACTACTTAGTCAAACTTGGTCCAACTTTACTGCTAGCATAATGCATTGC
TGGTTATTATTAGCCAGCAATTTGATCAAACCAGGCTTTGGAATGTTAATCATAG
Intron 9 GTACGAAGAA ... CAAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.89 | 20 | 0 | 1.6 |
| A2 | 25.98 | 18.1 | 3 | 7.1 |
| A3 | 11.5 | 15 | 0 | 2 |
| A4 | 44.22 | 9 | 3 | 7.1 |
| A5 | 5.36 | 7 | 0 | 0.4 |
| A6 | 13.77 | 29 | 0 | 5.3 |
| A7 | 14.48 | 47 | 0 | 9.1 |
| A8 | 14.9 | 42.6 | 0 | 7.9 |
| A9 | 14.91 | 74 | 0 | 14.9 |
| A10 | 20.69 | 40.1 | 0 | 11.6 |
>TRINITY_DN98790_c0_g1_i2 from sample A4 / Example spliced isoformGCCGATGCCACCTCCAGAATGAGCGATCGACTCTTTACGGGAAAAGATTTAGTTTGAAAATTTATCAGCGAAGGAAATTTAAGCTCGTCACAGCATATAGGGAAATATGTTAAAATACATTCTTCCTTGCATTCGATTTACACAGGTGGTTTAATACCTGGAATTGATCAGTTTTAGAGGGCTTTAGATCCTGTTTGTAT
CATATCGACAGAAGAGCGGCTTTTTTCGAGCTTAATAAGAGTGGAATGATAATTATTTTCGGTAAATAAAAGAAAAAAACCACCGATGAGTACAGCTGCAATCATCGGGGTCAGTACAGGAAAGCAGTTTCTACGCTCTTCATTTCTTCCATCAGAACTCGCAGAAAGATTGGCTTCATTTACGGATCAAGGAACTTTAC
AGTTTACTACTAGTGTGCGGAAACATGTAGCGCTTGCAAAGAAGGGTTCGAATCCCAGAACACAAAGTAGGTCTGACAAACAAAAACGAGGAGAGTCTTTGAAGGCATTGGGAGATTCTCATGAATTCTTGGCATCTTCCACCGATGAAACAGCATGCACAACATCGGCTATCCTGGAAAATGATGTGATTTTTCAGGAA
GAACATTCGTTGGAGGCTGTAATTCTTCTTCAGAAATCTATGTTGGAGAAACAATGGGGCCTTTCTCTTGATTTAACCAAATCAAGAGAGCTTAGCTCTTCAAAGCGCCATGAGAAAATGGAAGTTGTCCGTTCTGGGAAACCATCTGCTAGGAAGCGTCGACTAGCTGCAAGAAGCAGATCAACTCAGAATTTGGTTAA
AGTAAAATCCATGGATCAGAAAGTAACTGAAAGGAAGCAAGATCCGGTGTCTCTGAAAGTAGAATCGCTGCAGTATCAGATGACAGATTACATGAAGGGCATGCTAAATAAAGATTTGCTTACACACAAAGAGGTTGTACGCCTTTCAAAGATAATACAGACTGGCCTTTCTTTAAAGAAACACAAATCAAGGTTGAAAG
TCAAATTAGGATATGAACCATCAGATGCACAATGGGCTGCTTCGATGAGTATGTCTGTAGTTGAGCTAAATAAAAAGCTCACGGAGTCTTCTATTGCAACAGAAACAATGGCAGTGAGTAATATACGACTCGTTGTCTCAATTGCCCGAAAGTATAGAAACATGGGCATTGAAATGGCAGATTTGATTCAGGAGGGCTTA
ATTGGGCTGCTACATGGCATTGAGAAATTTGATTCCTCAAAAGGTTTCAGGCTTTCAACATATGTGTATTGGTGGATACGTCAGGGTATCACAAGAGCGATCGCTGAACATTCAAGGACAATAAGATTACCTACTCACTTGCATGAGAGATTGGGTTTAATCAGGAATGCAAAGTTACTCCTAAAGGAGAAAGGTGTGGA
CCCTTCACTTGAGAGAATTGCGACAACCCTAAGCATGTCAGTCAAAAAGGTGAAAAATGCAACAGAGGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATTATATTGCAGATACTAATCTTGAAAATCAGCCATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATA
AATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTTTATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAAAAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATT
TTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCA
>TRINITY_DN98790_c0_g1_i8 from sample A4 / Example unspliced isoform:GTGAAAAATGCAACAGAGgtacgaagaaactttattctatttattctgtcttcttccatctggcattttggttttagaatcctgcaaacttaaaaaagttttgcaaaatgcagGCACCTAAAACTGTGATTTCAATTGACAAGGAAGCCCATGACAGATTCGACAACAATGCAAGTGATACTTTGCATAGTGTAAAGACC
AGCCAATTGTTGTGATTAACTATTTTAATTGTTTCAAGAAATTCTTAAAAATTGCAACTCTGAAAATTTTGTTTCAGTTCACAGATATTAAGAAATCACAATTATGAAATATGTCACTCCTATAGCTTCTTAGTTTTTTCGAGGTCAGTGAGCTTTGTTTTCCTTGCAGTATATTGCAGATACTAATCTTGAAAATCAGC
CATGGTTTACTGTAGAAAGGAGCGCTTTAAGAGAGGATGTGAATAAATTTCTCAGTTCGACATTGACCAAGAGAGAGCAAATGATAATCAGGCTTTATTATGGTCTGGATACACACAAGAGCTGTACATGGGAAGATATTAGTAAGGGACTGGGATTGTCCAGAGAGAGGGTGAGACAAATTGGGCTTGTATCATTGGAA
AAGCTGAAACGTGCAGCTAGACATGGTAATCATCTGGAGCCTATTTTCATGCAGGCTTGACAAACACCAGCAGCAGTTATACCCACTAAGTTGATCCA