sp|Q8L730|SDI2_ARATH ----> Protein SULFUR DEFICIENCY-INDUCED 2

Intron 1 GTGGATTTCA ... TTGCAAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	17.38	48.5	1.5	7.5
A2	11.43	49	0.5	4
A3	13.92	63.5	3.5	9
A4	23.48	40	1	10
A5	12.5	24.5	0	3
A6	5.79	122.5	1	5.5
A7	15.24	214	7.5	29.5
A8	16.66	186.5	11.5	32.5
A9	16.77	286.5	16.5	47
A10	13.98	198.5	6	23.5

>TRINITY_DN106934_c0_g3_i5 from sample A3 / Example spliced isoform

TATGGGTGTTGGCAGAGTAATTTGGGATTGGCATATATGCAACAACATGACTCCTGTTCTGCAGAAATCGTTTATAGGAAAGCACAGGTATTGGAGCCAGATGAGAACAAGGCCTGTAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAA
TTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAG
GAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAATGTATTTAACAGTGTAT
ATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATGGTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAA
TTGTCTACATGTCGAATGTCAGCTTCATTGCAATGCCTTTGCATAATAATACAACTTTTAACAGGGCAATTGTGCGTTGAAACAATCTCGCATAAGAGGGGACTTCAGGGAGGCACCTCAAACTGGTAGTGAGGGTGGATGAGAATACCACATTAGGAGACAATGTGAAGAATTGTTGACTGATCAAACAGTTGAGAACA
AAAGAGACAAGTTGTTTGGAACATGACTAGGGATAGAGTAAATATCTCCTAGTTCCCATGAGAGACAATAGAGACAAGTGGAACATCAATCTCTACTTTCTTATCTAAAATGATAACAAAGTTGTTTGGAACATGACTAGG

>TRINITY_DN106934_c0_g3_i1 from sample A3 / Example unspliced isoform:

GTTCTGCAGAAATCGTTTATAGgtggatttcatttgaatatgattcaattttctattattcaattacaatgctagaaagaggaatagatgatgtattgaatgaataattgcaagcagGAAAGCACAGGTATTGGAGCCAGATGAGAACAAGGCCTGTAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGG
CCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGG
TGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTG
CATTTGCGATGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATGGTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCA
AAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATTGTCTACATGTCGAATGTCAGCTTCATTGCAATGCCTTTGCATAATAATACAACTTTTAACAGGGCAATTGTGCGTTGAAACAATCTCGCATAAGAGGGGACTTCAGGGAGGCACCTCAAACTGGTAGTGAGGGTGGATGAGAATACCACATTAGGAGA
CAATGTGAAGAATTGTTGACTGATCAAACAGTTGAGAACAAAAGAGACAAGTTGTTTGGAACATGACTAGGGATAGAGTAAATATCTCCTAGTTCCCATGAGAGACAATAGAGACAAGTGGAACATCAATCTCTACTTTCTTATCTAAAATGATAACAAAGTTGTTTGGAACATGACTAGG

Intron 2 GTTGATTTCA ... TTCCTCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	3.64	53	2	2
A2	11.29	55	10	4
A3	5.19	64	3	4
A4	14.53	50	13	4
A5	19.05	34	14	2
A6	7.51	154	16	9
A7	18.18	243	62	46
A8	14.29	216	39	33
A9	13.38	288	49	40
A10	10.09	263	38	21

>TRINITY_DN46327_c0_g2_i1 from sample A7 / Example spliced isoform

CGCAGCAAAACTGCACGTTCGCATGGAAGAAAGATTCAGGTTTCCATAAGGCAAGAGACCGCTCGGCTTCTGGGTAATTTGGGATGGGCGTATATGCAACAGCATGACTACTGTTCCGCAGAAAGCGTTTACAGGGAAGCACAGGCATTGGAGCCTGATGACAACAAGACTTTTAATCTAAGCCTCTGTCTGATGAAACA
AGGGAAGGTGGACGAGGCCATGGGTTTTCTACAGTGTGTGCTCAAGAACAGTAAGAATTCTACGAACTATAATATTAATAACAGTACAGGAAAATCGAAGTCACTGGATCGTGTGGAAGCGTTGTTGAAGGAAATTGTGGATTCTAAAACAGAGGGAAGGACTGGGGAGGAATGTCAATCAGCAGCATCAGCATCCCGTG
TTGAAGATTTGGAGTCGGTTTGGTCTTGTGAAGACGTAGGAGGAGGAGGATCACAAGGAGGAGAATGGGTTATGGCAGTTGAGGTAAATCGCAAACGAAATCGACTGAAAGTTTTTGAAGAGATGACATCTGCTCATAACAAGAAGGGACATCTGAATGAAAGCATTATTGAGCCCTCTATGCAGCATTAATGGCGGTCT
ATTACGTTTTCCAGTATATATACATATAGGTATTTAGCAGCGTGTATCTGCCTGTACATCTTGCATAGAATGAAGTATTGAACATTGGGCAGAGTCTTTGGGTGAGCGTTTGTTGTATTGTGCAGAGTATAAGATGTGTTTGTATCCTGTAAAATTTGGGTTTCTTTTCATGATCTCATTTGTTTAAACTGAAGATTAAG
TGTACTTCACTGCAATGTCGTTGCATAATAACACATATGGAAGCAGGAGAGCAATGTATTAAGAGTAGTGCTTAAATCATAGTTACCCAATTACGTAGAATCATGTTAATTAATACATAAATTCGGAAGTTCGATTCAGCTTACTAATTATTATGTTTAATTTGATTTGCTCAATTTACAAATGAATAAATCTTTTATCA
AAAAAA

>TRINITY_DN46327_c0_g2_i2 from sample A7 / Example unspliced isoform:

CTCTGTACAAGGTCCCGCTTGGAGACACCCCCTATGGCAGAGCCAAGCATCTTCAGCTCGTGGAGAAGGATCCTGCTGGTGCCATCGCATCGTTCTGGGAAGCAATTAATGCCGGAGACCGTATTGACAGCGCATTGAAGGATATGGCCGTCGTGATGAACCAGCAGAACCGGCCATTGGAAGCCATCGAGGCCATAAAG
GCCTTTAGACACCTTTGCTCCAAGCAAGCACAGGAGCCTCTTGATAATGTGCTCATTGATCTCTTCAAGAAATGTGGAAGATTTGATGAGCAGATTAGTCTATTGAAGCATAAGCTCCGCTTAATTCAGCAAGGAGCTGCATTCAATGGTAAATCCACCAAAACTGCACGGTCACATGGAAGGAAGTTTCAGATTTCCAT
AAAGCAAGAGACCACTCGGGTTCTGGGTAATTTGGGATGGGCGTATATGCAACAGCATGACTACTGTTCCGCAGAAAGCGTTTACAGgttgatttcaattgaagaacagagattgactttctattattcgattacaatgttagagggaggaatgagatgttatactgaatgaatatttcctcgcagGGAAGCACAGGCAT
TGGAGCCTGATGACAACAAGACTTTTAATCTAAGCCTCTGTCTGATGAAACAAGGGAAGGTGGACGAGGCCATGGGTTTTCTACAGTGTGTGCTCAAGAACAGTAAGAATTCTACGAACTATAATATTAATAACAGTACAGGAAAATCGAAGTCACTGGATCGTGTGGAAGCGTTGTTGAAGGAAATTGTGGATTCTAAA
ACAGAGGGAAGGACTGGGGAGGAATGTCAATCAGCAGCATCAGCATCCCGTGTTGAAGATTTGGAGTCGGTTTGGTCTTGTGAAGACGTAGGAGGAGGAGGATCACAAGGAGGAGAATGGGTTATGGCAGTTGAGGTAAATCGCAAACGAAATCGACTGAAAGTTTTTGAAGAGATGACATCTGCTCATAACAAGAAGGG
ACATCTGAATGAAAGCATTATTGAGCCCTCTATGCAGCATTAATGGCGGTCTATTACGTTTTCCAGTATATATACATATAGGTATTTAGCAGCGTGTATCTGCCTGTACATCTTGCATAGAATGAAGTATTGAACATTGGGCAGAGTCTTTGGGTGAGCGTTTGTTGTATTGTGCAGAGTATAAGATGTGTTTGTATCCT
GTAAAATTTGGGTTTCTTTTCATGATCTCATTTGTTTAAACTGAAGATTAAGTGTACTTCACTGCAATGTCGTTGCATAATAACACATATGGAAGCAGGAGAGCAATGTATTAAGAGTAGTGCTTAAATCATAGTTACCCAATTACGTAGAATCATGTTAATTAATACATAAATTCGGAAGTTCGATTCAGCTTACTAAT
TATTATGTTTAATTTGATTTGCTCAATTTACAAATGAATAAATCTTTTATCAAAAAAA

Intron 3 GTACATAGCA ... TTGCAAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	22	11	1
A2	39.39	20	13	0
A3	30.56	25	11	2
A4	46.97	35	31	1
A5	20	8	2	0
A6	37	63	37	0
A7	35.23	114	62	3
A8	33.51	127	64	6
A9	37.63	179	108	9
A10	41.58	111	79	4

>TRINITY_DN42760_c1_g1_i3 from sample A6 / Example spliced isoform

GGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCAGACACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGG
TCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGGAAAGCACAGGTATTGCAGCCAGATGAGAACAAGGCCTGTAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATA
ACAGTAGAGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTG
GCAGTTGAGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGAGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTGTGCAGCATCAAGAGCGGTAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAGTGTACTTAACAGTGTATATCACGTGGGTACCA
TTAATGCTGCGTAGCGGGTTGCCCGTTCTCATGGTGGTAAACTGGGT

>TRINITY_DN42760_c1_g1_i5 from sample A6 / Example unspliced isoform:

GGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCAGACACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGG
TCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGgtacatagcatccacacccttcctgttctattagtatttctgtctaacagtggttgaatgagaatgtaatgggtgttggcagagtaatttgggattggcatatatgcaacaacatgactcctgttctgcagaaatcgtttataggt
ggatttcatttgaatatgattcaattttctattattcaattacaatgctagaaagaggaatagatgatgtattgaatgaataattgcaagcagGAAAGCACAGGTATTGGAGCC

Intron 4 GTACATAGCA ... GTGTTGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	16.18	57	11	1
A2	17.57	61	13	0
A3	18.64	48	11	4
A4	30.69	70	31	6
A5	7.41	25	2	0
A6	20.67	142	37	5
A7	19.44	257	62	10
A8	23.36	210	64	10
A9	25.12	322	108	21
A10	24.38	245	79	11

>TRINITY_DN42760_c1_g1_i6 from sample A6 / Example spliced isoform

GGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCAGACACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGG
TCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGAGTAATTTGGGATTGGCATATATGCAACAACATGACTCCTGTTCTGCAGAAATCGTTTATAGGAAAGCACAGGTATTGCAGCCAGATGAGAACAAGGCCTGCAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGC
CATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGT
GTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGAGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTGTGCAGCATCAAGAGCGGTAGAGCGGTAGAGTA
CCCTTTGCATTTGCGATGTATATAAATAAGTGTACTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATGGTGGTAAACTGGGTTATGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGT
AATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATTGTCTACATGTCGAATGTCAGCTTCATTGCAATGCCTTTGCATAATAATACAACTTTTAACAGGGCAATTGTGCGTTGAAACAATCTCGCATAAGAGGGGACTTCAGGGAGGCACCTCAAACTGGTAGTGAGGGTGGATGAGAATACCACATT
AGGAGACAATGTGAAGAATTGTTGACTGATCAAACAGTTGAGAACAAAAGAGACAAGTTGTTTGGAACATGACTAGGGAACATTGTTAAACTTAAATTAAATTCATTGTATAAAGTAAAATACATTTCTCCTCTTATTTTAAGAACTAAAATAGTTCACATACTATCACACTAATCGAAGTCGAAGTGGTTTTGAGTTTT
ATATTAATAAGAGAAATGGTTATTGGATTTTAAAATAGTTC

>TRINITY_DN42760_c1_g1_i5 from sample A6 / Example unspliced isoform:

GGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCAGACACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGG
TCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGgtacatagcatccacacccttcctgttctattagtatttctgtctaacagtggttgaatgagaatgtaatgggtgttggcagAGTAATTTGGGATTGGCATATATGCAACAACATGACTCCTGTTCTGCAGAAATCGTTTATAGGT
GGATTTCATTTGAATATGATTCAATTTTCTATTATTCAATTACAATGCTAGAAAGAGGAATAGATGATGTATTGAATGAATAATTGCAAGCAGGAAAGCACAGGTATTGGAGCC