NA ----> NA
Intron 1 GTAAGATCTT ... CCTTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.37 | 157 | 1 | 33 |
| A2 | 20.21 | 177.7 | 0 | 45 |
| A3 | 20.25 | 252 | 0 | 64 |
| A4 | 10.24 | 114 | 0 | 13 |
| A5 | 21.78 | 79 | 0 | 22 |
| A6 | 14.29 | 12 | 0 | 2 |
| A7 | 18.39 | 182 | 0 | 41 |
| A8 | 22.45 | 38 | 1 | 11 |
| A9 | 13.77 | 119 | 0 | 19 |
| A10 | 19.66 | 175.7 | 0 | 43 |
>TRINITY_DN118831_c0_g1_i3 from sample A1 / Example spliced isoformCAACAACAACCCTTCCATTATTAAAAAATGAACAAGTTGGACATTTTCTTTTGAAAGCTCTTGGAACCTCAGTCTGACTTTCCTTCCTGAATTGTGATTTACACTAAATAGCTCGAAAAGGCGTATGACTTGTTCTTCTTGTTCTTTATAATCTTTTCCTCCGCCCCAGTTGAGGCCTCTTATAACATATATTACCACAA
ACGTCTCTACTCATACATTTATGACTGGAGTCGGCTGTCGCCTCCATAGCTTCCCTGCCATTAACAATTCAATCCGATTGCCATAATTCAACAGCATCTACTGTTTCTAAGCCGAGGAAGCTATCTCTGCCATCCATGTTCGGTAAAAGTTTCAAGTCTGCAAAATGCAAGACCACCCTAAGGCTTGCAATCTCGCGCAT
GAAATTGATAAAGAACAAGTCAGACTTGCAGATGAAGCAAATGAGGACGGATCTGGCTCAGCTTCTGCGGTCCGGGCAGGAGGCAAGTGCCAGAATTCGGGTTGAACAGATAATAAGAGAGCAGAATATGATGGCGGCACGTGAATTCATTGAACTCTTTTGTGAACTAATTGTGGCACGTTTACCCATTATTGAATCCC
AAAAGAACTGTCCTATTGATTTGCGGGAAGCAATATCAAGTTTGATATTTGCAGCTCCAAGATGTGCTGACATTCCAGAACTTACAGAAATTCGCAGCCTCTTTGGGTCAAAGTATGGTAAAGAATTTGTAGCTGCAGCAGCTGAATTGCGCCCAGATTGTGGTGTAAACAGAACGATTATTGAAAAACTATCTGTGAGA
ACCCCTAGTGGAGAAGTAAAACTGAAGCTCATGAAAGAAATAGCTAAGGAGCAGCAAATTGATTGGAATCCAGCAGACTCTGAAAAAGAACTTTCGAAGCCCCCTGAAGACATGCTTGATGGCCCAAATAAATTTGTTGGTGTTACCAAGATGAATATAGAACCTGTCAAGGAACCCCATCAGTCTGTTTCTCAGCAGAA
ATATGGACCTGAGCCCCAGGTTTCTAATCAAGGTACAAGTAGAATGCCTAACAGTTCAAGAAGTTCTGATTCTGGAGTTGCTGCAACTTACATGGCCCCTACAATGACTAAAGTTGCCCAAGATTTTGCATCTTCAGCTACATCATCCATCGACAATGTAAAATTTGAGAAAGGAAGCACAAGCTCATCTGTTTCACTTT
CTAGTGCCAGTATCGAGCTTGAACAACTGTCTCAAGATTCCTCACGTGTTAAAAATGTGGAGTATGCAGATTTGCATCAAGAACCTCTAGGGGAAAGAACTTCTATTACCATGGATAAAAAAAATACGTTTGCCACAAATGATATGCCTGTTGGAAAATATGCTTCTGCTCTTCAGTCAACTTCTGATAGAATGGACAGT
AGAAAAGAAGATTTAATAGCCAAATCCTCAACATCATCTAATAAATCCAATGAGAGTGGGATTTTGAACACTAGTGGCAAAGAGTGGAATATGAATTTCAAAGATGCAGCTTCTGCTGCTCAGGCAGCTGCTTATTCTGCAGAGAAGGCATGTGAAGCTGCAAAAGCTGCTGCTGATCTTTCAAATCCTAAAAGATTTCT
CAAGGAAGGTTCAACACGAGCCAGGGTTACTCCATTTAGCTTAAGCCAAAGAGGAGAGGAGATTAAAGATTTAAGTAATTCAAGGATAAGTAGAAAACCTAGTTCCAATGTCTTTGTGCAGAGTGAAGAACAGTCCTTTGATGGTCATGAGTTATATGGGGGGGATTATGTTGAAACTCATGCAGAGAATGCAGTGTCTC
AGGAGAGTGGAAATTGGCAGGGCAGTCAAGAGAAAGGAAGAGGGAAGGTTGACAGCGAGTATCAATTGCATGTAGAAAGGCCGAGCATGACGGACCCTTATCGGCAGCCTTCTGATAGAAGTAACCGTGACAATACAACACCTATTGCATTGTCTGAGCGCATTACAAGGGAAGAGAAAGAAAAATTTGATGGTAAAGAA
GAGCATCATCATGTCAGCAGGAAAGATAGTGATGTTAGTGACTCTGATGAGGAACTCACACCTTGGAGAAGAGAAACAGTGATCTCACATACAAACATTCAACCATCAACTAGTTTTTATGATTCAGTTAGGCTGAACTCTAAGAGTGCTGAGGAGGTTGAATTAGAATGCGCTGAAGATAGTAGAAATGCATTTGATAA
CATTAAATTTGATGGTAAAGAGGAGCAGCATCATATCAGCAGGAAAGATAGTGATGCTAGTGACTCTGATGAGGATCTCACACCTTGGAGAAGAGCAACAGTGATGTCACATACAAACAATCAACCATCAACTAGTTTTTATGATTCAGTGAGATTGAACTCTAAGAGTGCTGAGGAGGTCAAATTAAAACGTGCTGAAA
ACAGTAGAAATGCAGTTAATGACATCAAATTTGATGGTAAAGAAGAGCAACGTCATGTCAGCAAGAAAGATACGGATGTTAGTGATTCTAATGAGGAATTCCCACCTTGGAGAAGAGAAACAATCATCTCACATACAAACACTCCACCATCAGCTAGTTTTTATGACTCGGTTAGACTGAACTCTAAGAGTGCAGAGGAG
ATCAAATTAAAACGTACTAAAGATGGTAGAAATGCAGTTAACGACATTAAATTTGATGGTAAAGAAGAGCAGCGTCATGTCAGCAGGAAAGATACTGATGTGAGTGATTCTGATGAAGAATTCCCACCTTGGAGAAGAGATCCAGTGACTTCACATACAAACACTCAACCATCAACTAGCTTTCATGATTCAGTTAGACT
GAACTCTAAGAATACTGAGGAGATCAAATTAAAACATACTAAACATAGTAGAGATGCATCTAATTACACTCCTCAGTTTGATGACTTGCCCCATGGGGAACCTTCAGATATTAAAGGTATTCCACAATATACTGAGCATGCTTCTGTACTGAAGTCGAGTTCTTTTGTAGAAGAACATAACCAGCTGTATTCTAAACTTC
CACCATCTCAGCCTCCCAAGCGCCCTCCTCCAGGTGTTTCTACAGCCTCTGAAGCCCACTTTCAATCATCCCTTTCAAATGAAAAGAGCCCTCTAGGAAAGGTTTCAACATCATATGATTCATTGTCTGATTCAAGCTCAAATGGGGATGATTCAAGCTCAAATGGGGACGAGCAGAGTGGTCTAAGAATGAGAGGGAAA
CCAAGTTCAACTTCAAATGATTCTGGGAGGCATTTTGTTGAAGCTCATGCTAAAAATGGAAAATCTCAAGGGAACCTACATCTGCCCAAGCAAAGAAGTAGCAGGCCAGATCATTATCATCAGCCTTCAAATAGAGTCTATCATCATGATAATAAACCTAGTGCAGGAAAATCACAACACTTAAGAAGGGAAGAGAAAGG
TCGGCTTGGTCCTAGTAGTAGTCCTAAAATGCAGGAAACTGTTCCTAGCATCTCTGTTGAAGAATCACCATCAAGGAGAGAAAATCTGAGTTCACATTCCAAAACTCCAGCACCTTACAGTTTTTATGATTCTGATGGCACAACCTCTGAGAGTGGAGAGGAGATTGAGTTGGAAAGATACAATGACAGTACCAGTAGTA
AGATTAACAAACCTTCTCTCTTCAGTGGCTCCTCACATGATGCATCATCAGACTTCAAACATCAGAATCCAAAACATGCAGAAAATCTCTCTTCACCAACACCAAATCGGGTCACCAAGTCTCATATTCAGTCATCTCAGTCTAATCCAGAGTTTCGACCTCTTAAACAGTCTCTTCCTAGTAAACAGTCTCTTCCCGGT
GTAACAGTTTCCTCTCAGAATACTCAATCTCCAATTTCTGTTGGAGGGTCAGAAGCATCAAGGGAGGGCCCAGCAAAGGGTGCTTCACATGTTCATCCAAAGCTACCAGATTATGATAATTTGGCTGCCATGTTTGAGGCCATGAAATCTAATAGACGGTGAATTGAAGTTATTCTGAATGGTTCTCACAACCCATCTAT
TTTATTAGAGACTGTCCATGCCTAATCGTATATTCGAAGATCACTTGCAGTGTAGTTACCATTTTACACATTGCTTGGTTTTATATTTAGTTATTGGTCTCTTTGGCGTGTAAGATTTATTATAACCCATTTCAACCATTGTGTATTGAGCAACTTCCAAACACTCATTCAATCATTTTTTTGATCTCTTATTATTTCAC
AAAGTCTATATTGATTTTATTGTTTTCAATTCTTTAAGAGTTGAAGATTGATTTTTGAATAATATGAGCTATAATTATGAAAGTCTAATTGTAGTATAAGTTAAAGATAAATTGAGGAAGACAGTGC
>TRINITY_DN118831_c0_g1_i1 from sample A1 / Example unspliced isoform:GAAGCCCCCTGAAGACATGCTTgtaagatctttgctaaaatattttacctgttgataagtccacgagtccattttgtaggctgttggcattgctaacctatttacctttaccttgagcagGATGGCCCAAATAAATTTGTTGGTGTTACCAAGATGAATATAGAACCTGTCAAGGAACCCCATCAGTCTGTTTCTCAGCA
GAAATATGGACCTGAGCCCCAGGTTTCTAATCAAGGTACAAGTAGAATGCCTAACAGTTCAAGAAGTTCTGATTCTGGAGTTGCTGCAACTTACATGGCCCCTACAATGACTAAAGTTGCCCAAGATTTTGCATCTTCAGCTACATCATCCATCGACAATGTAAAATTTGAGAAAGGAAGCACAAGCTCATCTGTTTCAC
TTTCTAGTGCCAGTATCGAGCTTGAACAACTGTCTCAAGATTCCTCACGTGTTAAAAATGTGGAGTATGCAGATTTGCATCAAGAACCTCTAGGGGAAAGAACTTCTATTACCATGGATAAAAAAAATACGTTTGCCACAAATGATATGCCTGTTGGAAAATATGCTTCTGCTCTTCAGTCAACTTCTGATAGAATGGAC
AGTAGAAAAGAAGATTTAATAGCCAAATCCTCAACATCATCTAATAAATCCAATGAGAGTGGGATTTTGAACACTAGTGGCAAAGAGTGGAATATGAATTTCAAAGATGCAGCTTCTGCTGCTCAGGCAGCTGCTTATTCTGCAGAGAAGGCATGTGAAGCTGCAAAAGCTGCTGCTGATCTTTCAAATCCTAAAAGATT
TCTCAAGGAAGGTTCAACACGAGCCAGGGTTACTCCATTTAGCTTAAGCCAAAGAGGAGAGGAGATTAAAGATTTAAGTAATTCAAGGATAAGTAGAAAACCTAGTTCCAATGTCTTTGTGCAGAGTGAAGAACAGTCCTTTGATGGTCATGAGTTATATGGGGGGGATTATGTTGAAACTCATGCAGAGAATGCAGTGT
CTCAGGAGAGTGGAAATTGGCAGGGCAGTCAAGAGAAAGGAAGAGGGAAGGTTGACAGCGAGTATCAATTGCATGTAGAAAGGCCGAGCATGACGGACCCTTATCGGCAGCCTTCTGATAGAAGTAACCGTGACAATACAACACCTATTGCATTGTCTGAGCGCATTACAAGGGAAGAGAAAGAAAAATTTGATGGTAAA
GAAGAGCATCATCATGTCAGCAGGAAAGATAGTGATGTTAGTGACTCTGATGAGGAACTCACACCTTGGAGAAGAGAAACAGTGATCTCACATACAAACATTCAACCATCAACTAGTTTTTATGATTCAGTTAGGCTGAACTCTAAGAGTGCTGAGGAGGTTGAATTAGAATGCGCTGAAGATAGTAGAAATGCATTTGA
TAACATTAAATTTGATGGTAAAGAGGAGCAGCATCATATCAGCAGGAAAGATAGTGATGCTAGTGACTCTGATGAGGATCTCACACCTTGGAGAAGAGCAACAGTGATGTCACATACAAACAATCAACCATCAACTAGTTTTTATGATTCAGTGAGATTGAACTCTAAGAGTGCTGAGGAGGTCAAATTAAAACGTGCTG
AAAACAGTAGAAATGCAGTTAATGACATCAAATTTGATGGTAAAGAAGAGCAACGTCATGTCAGCAAGAAAGATACGGATGTTAGTGATTCTAATGAGGAATTCCCACCTTGGAGAAGAGAAACAATCATCTCACATACAAACACTCCACCATCAGCTAGTTTTTATGACTCGGTTAGACTGAACTCTAAGAGTGCAGAG
GAGATCAAATTAAAACGTACTAAAGATGGTAGAAATGCAGTTAACGACATTAAATTTGATGGTAAAGAAGAGCAGCGTCATGTCAGCAGGAAAGATACTGATGTGAGTGATTCTGATGAAGAATTCCCACCTTGGAGAAGAGATCCAGTGACTTCACATACAAACACTCAACCATCAACTAGCTTTCATGATTCAGTTAG
ACTGAACTCTAAGAATACTGAGGAGATCAAATTAAAACATACTAAACATAGTAGAGATGCATCTAATTACACTCCTCAGTTTGATGACTTGCCCCATGGGGAACCTTCAGATATTAAAGGTATTCCACAATATACTGAGCATGCTTCTGTACTGAAGTCGAGTTCTTTTGTAGAAGAACATAACCAGCTGTATTCTAAAC
TTCCACCATCTCAGCCTCCCAAGCGCCCTCCTCCAGGTGTTTCTACAGCCTCTGAAGCCCACTTTCAATCATCCCTTTCAAATGAAAAGAGCCCTCTAGGAAAGGTTTCAACATCATATGATTCATTGTCTGATTCAAGCTCAAATGGGGATGATTCAAGCTCAAATGGGGACGAGCAGAGTGGTCTAAGAATGAGAGGG
AAACCAAGTTCAACTTCAAATGATTCTGGGAGGCATTTTGTTGAAGCTCATGCTAAAAATGGAAAATCTCAAGGGAACCTACATCTGCCCAAGCAAAGAAGTAGCAGGCCAGATCATTATCATCAGCCTTCAAATAGAGTCTATCATCATGATAATAAACCTAGTGCAGGAAAATCACAACACTTAAGAAGGGAAGAGAA
AGGTCGGCTTGGTCCTAGTAGTAGTCCTAAAATGCAGGAAACTGTTCCTAGCATCTCTGTTGAAGAATCACCATCAAGGAGAGAAAATCTGAGTTCACATTCCAAAACTCCAGCACCTTACAGTTTTTATGATTCTGATGGCACAACCTCTGAGAGTGGAGAGGAGATTGAGTTGGAAAGATACAATGACAGTACCAGTA
GTAAGATTAACAAACCTTCTCTCTTCAGTGGCTCCTCACATGATGCATCATCAGACTTCAAACATCAGAATCCAAAACATGCAGAAAATCTCTCTTCACCAACACCAAATCGGGTCACCAAGTCTCATATTCAGTCATCTCAGTCTAATCCAGAGTTTCGACCTCTTAAACAGTCTCTTCCTAGTAAACAGTCTCTTCCC
GGTGTAACAGTTTCCTCTCAGAATACTCAATCTCCAATTTCTGTTGGAGGGTCAGAAGCATCAAGGGAGGGCCCAGCAAAGGGTGCTTCACATGTTCATCCAAAGCTACCAGATTATGATAATTTGGCTGCCATGTTTGAGGCCATGAAATCTAATAGACGGTGAATTGAAGTTATTCTGAATGGTTCTCACAACCCATC
TATTTTATTAGAGACTGTCCATGCCTAATCGTATATTCGAAGATCACTTGCAGTGTAGTTACCATTTTACACATTGCTTGGTTTTATATTTAGTTATTGGTCTCTTTGGCGTGTAAGATTTATTATAACCCATTTCAACCATTGTGTATTGAGCAACTTCCAAACACTCATTCAATCATTTTTTTGATCTCTTATTATTT
CACAAAGTCTATATTGATTTTATTGTTTTCAATTCTTTAAGAGTTGAAGATTGATTTTTGAATAATATGAGCTATAATTATGAAAGTCTAATTGTAGTATAAGTTAAAGATAAATTGAGGAAGACAGTGC
Intron 2 GTGAGTCCAA ... TATGTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.11 | 217 | 16.8 | 98 |
| A2 | 34.12 | 195 | 21 | 101 |
| A3 | 33.74 | 271 | 22.4 | 138 |
| A4 | 37.1 | 178 | 14.6 | 105 |
| A5 | 37.07 | 129 | 10.4 | 76 |
| A6 | 38.46 | 8 | 1.8 | 5 |
| A7 | 33.49 | 145 | 15.2 | 73 |
| A8 | 35.38 | 42 | 3.4 | 23 |
| A9 | 35.83 | 154 | 14.4 | 86 |
| A10 | 39.47 | 204 | 18.4 | 133 |
>TRINITY_DN111412_c0_g2_i6 from sample A2 / Example spliced isoformCCGGCGGAAAGCCAACTTCTGTGTTCAATAACAACAACAACCCTTCCATTATTAAAAAATGAACAAGTTGGACATTTGCTTTTGAAAGCTCTTGGAACCTCAGTCTGACTTTCCTTCCTGAATTGTGATTTACACTAAATAGCTCGAAAAGGCGTATGACTTGTTCTTCTTGTTCTTTATAATCTTTTCCTCCGCCCCAG
TTGAGGCCTCTTATAACATATATTACCACAAACGTCTCTACTCATACATTTATGACTGGAGTCGGCTGTCGCCTCCATAGCTTCCCTGCCATTAACAATTCAATCCGATTGCCATAATTCAACAGCATCTACTGTTTCTAAGCCGAGGAAGCTATCTCTGCCATCCATGTTCGGTAAAAGTTTCAAGTCTGCAAAATGCA
AGACCACCCTAAGGCTTGCAATCTCGCGCATGAAATTGATAAAGAACAAGTCAGACTTGCAGATGAAGCAAATGAGGACGGATCTGGCTCAGCTTCTGCGGTCCGGGCAGGAGGCAAGTGCCAGAATTCGGGTTGAACAGATAATAAGAGAGCAGAATATGATGGTGGCACGTGAATTCATTGAACTCTTTTGTGAACTA
ATTGTGGCACGTTTACCCATTATTGAATCCCAAAAGAACTGTCCTATTGATTTGCGGGAAGCAATATCAAGTTTGATATTTGCAGCTCCAAGATGTGCTGACATTCCAGAACTTACAGAAATTCGCAGCCTCTTTGGGTCAAAGTATGGTAAAGAATTTGTAGCTGCAGCAGCTGAATTGCGCCCAGATTGTGGTGTAAA
CAGAACGATTATTGAAAAACTATCTGTGAGAACCCCTAGTGGAGAAGTAAAACTGAAGCTCATGAAAGAAATAGCTAAGGAGCAGCAAATTGATTGGAATCCAGCAGACTCTGAAAAAGAACTTTCGAAGCCCCCTGAAGACATGCTTGATGGCCCAAATAAATTTGTTGGTGTTACCAAGATGAATATAGAACCTGTCA
AGGAACCCCATCAGTCTGTTTCTCAGCAGAAATATGGACCTGAGCCCCAGGTTTCTAATCAAGGTACATCATCCATCGACAATGTAAAATTTGAGAAAGGAAGCACAAGCTCATCTGTTTCACTTTCTAGTGCCAGTATCGAGCTTGAACAACTGTCTCAAGATTCCTCACGTGTTAAAAATGTGGAGTATGCAGATTTG
CATCAAGAACCTCTAGGGGAAAGAACTTCTATTACCATGGATAAAAAAAATACGTTTGCCACAAATGATATGCCTGTTGGAAAATATGCTTCTGCTCTTCAGTCAACTTCTGATAGAATGGACAGTAGAAAAGAAGATTTAATAGCCAAATCCTCAACATCATCTAATAAATCCAATGAGAGTGGGATTTTGAACACTAG
TGGCAAAGAGTGGAATATGAATTTCAAAGATGCAGCTTCTGCTGCTCAGGCAGCTGCTTATTCTGCAGAGAAGGCATGTGAAGCTGCAAAAGCTGCTGCTGATCTTTCAAATCCTAAAAGATTTCTCAAGGAAGGTTCAACACGAGCCAGGGTTACTCCATTTAGCTTAAGCCAAAGAGGAGAGGAGATTAAAGATTTAA
GTAATTCAAGGATAAGTAGAAAACCTAGTTCCAATGTCTTTGTGCAGAGTGAAGAACAGTCCTTTGATGGTCATGAGTTATATGGGGGGGATTATGTTGAAACTCATGCAGAGAATGCAGTGTCTCAGGAGAGTGGAAATTGGCAGGGCAGTCAAGAGAAAGGAAGAGGGAAGGTTGACAGCGAGTATCAATTGCATGTA
GAAAGGCCGAGCATGACGGACCCTTATCGGCAGCCTTCTGATAGAAGTAACCGTGACAATACAACACCTATTGCATTGTCTGAGCGCATTACAAGGGAAGAGAAAGAAAAATTTGATGGTAAAGAAGAGCATCATCATGTCAGCAGGAAAGATAGTGATGTTAGTGACTCTGATGAGGAACTCACACCTTGGAGAAGAGA
AACAGTGATCTCACATACAAACATTCAACCATCAACTAGTTTTTATGATTCAGTTAGGCTGAACTCTAAGAGTGCTGAGGAGGTTGAATTAGAATGCGCTGAAGATAGTAGAAATGCATTTGATAACATTAAATTTGATGGTAAAGAGGAGCAGCATCATATCAGCAGGAAAGATAGTGATGCTAGTGACTCTGATGAGG
ATCTCACACCTTGGAGAAGAGCAACAGTGATGTCACATACAAACAATCAACCATCAACTAGTTTTTATGATTCAGTGAGATTGAACTCTAAGAGTGCTGAGGAGGTCAAATTAAAACGTGCTGAAAACAGTAGAAATGCAGTTAATGACATCAAATTTAATGGTAAAGAAGAGCAACATCATGTCAGCAAGAAAGATACG
GATGTTAGTGATTCTAATGAGGAATTCCCACCTTGGAGAAGAGAAACAATCATCTCACATACAAACACTCCACCATCAGCTAGTTTTTATGACTCGGTTAGACTGAACTCTAAGAGTGCAGAGGAGATCAAATTAAAACGTACTAAAGATGGTAGAAATGCAGTTAACGACATTAAATTTGATGGTAAAGAAGAGCAGCG
TCATGTCAGCAGGAAAGATACTGATGTGAGTGATTCTGATGAAGAATTCCCACCTTGGAGAAGAGATCCAGTGACTTCACATACAAACACTCAACCATCAACTAGCTTTCATGATTCAGTTAGACTGAACTCTAAGAATACTGAGGAGATCAAATTAAAACATACTAAACATAGTAGAGATGCATCTAATTACACTCCTC
AGTTTGATGACTTGCCCCATGGGGAACCTTCAGATATTAAAGGTATTCCACAATATACTGAGCATGCTTCTGTACTGAAGTCGAGTTCTTTTGTAGAAGAACATAACCAGCTGTATTCTAAACTTCCACCATCTCAGCCTCCCAAGCGCCCGCCTCCAGGTGTTTCTACAGCCTCTGAAGCCCACTTTCAATCATCCCTT
TCAAATGAAAAGAGCCCTGTAGGAAAGGTTTCAACATCATATGATTCATTGTCTGATTCAAGCTCAAATGGGGATGATTCAAGCTCAAATGGGGACGAGCAGAGTGGTCTAAGAATGAGAGGGAAACCAAGTTCAACTTCAAATGATTCTGGGAGGCATTTTGTTGAAGCTCATGCTAAAAATGGAAAATCTGAAGGGAA
CCTGCATCTGCCCAAGCAAAGAAGTAGCAGGCCAGATCATTATCATCAGCCTTCAAATAGAGTCTATCATCATGATAATAAACCTAGTGCAGGAAAATCACAACACTTAAGAAGGGAAGAGAAAGGTCGGCTTGGTCCTAGTAGTAGTCCTAAAATGCAGGAAACTGTTCCTAGCATCTCTGTTGAAGAATCACCATCAA
GGAGAGAAAATCTGAGTTCACATTCCAAAACTCCAGCACCTTACAGTTTTTATGATTCTGATGGCACAACCTCTGAGAGTGGAGAGGAGATTGAGTTGGAAAGATACAATGACAGTACCAGTAGTAAGATTAACAAACCTTCTCTCTTCAGTGGCTCCTCACATGATGCATCATCAGACTTCAAACATCAGAATCCAAAA
CATGCAGAAAATCTCTCTTCACCAACACCAAATCGGGTCACCAAGTCTCATATTCAGTCATCTCAGTCTAATCCAGAGTTTCGACCTCTTAAACAGTCTCTTCCTAGTAAACAGTCTCTTCCCGGTGTAACAGTTTCCTCTCAGAATACTCAATCTCCAATTTCTGTTGGAGGGTCAGAAGCATCAAGGGAGGGCCCAGC
AAAGGGTGCTTCACATGTTCATCCAAAGCTACCAGATTATGATAATTTGGCTGCCATGTTTGAGGCCATGAAATCTAATAGACGGTGAATTGAAGTTATTCTGAATGGTTCTCACAACCCATCTATTTTATTAGAGACTGTCCATGCCTAATCGTATATTCGAAGATCACTTGCAGTGTAGTTACCATTTTACACATTGC
TTGGTTTTATATTTAGTTATTGGTCTCTTTGGCGTGTAAGATTTATTATAACCCATTTCAACCATTGTGTATTGAGCAACTTCCAAACACTCATTCAATCATTTTTTTGATCTCTTATTATTTCACAAAGTCTATATTGATTTTGTTGTTTTCAATTCTTTCAGAGTTGAAGATTGATTTTTGAATAATATGAGCG
>TRINITY_DN111412_c0_g2_i8 from sample A2 / Example unspliced isoform:CAGATTGTGGTGTAAACAGAACGgtgagtccaagcttgatatctgagtccaagtttctagttgataaaattcattacaaaatcctccttgtcattgatgcaaaattcaaatggaaacttaatttcctaataccagcagcaggtataacaatcggccaatctctatgattgcgaatcagttatacagttgtcagttatcca
tgtctgtcaaaagataatgttaaagagttccagatgccttctttcttacttgttcagtggtggcctcatatgttccagATTATTGAAAAACTATCTGTGAGAACCCCTAGTGGAGAAGTAAAACTGAAGCTCATGAAAGAAATAGCTAAGGAGCAGCAAATTGATTGGAATCCAGCAGACTCTGAAAAAGAACTTTCGAA
GCCCCCTGAAGACATGCTTGATGGCCCAAATAAATTTGTTGGTGTTACCAAGATGAATATAGAACCTGTCAAGGAACCCCATCAGTCTGTTTCTCAGCAGAAATATGGACCTGAGCCCCAGGTTTCTAATCAAGGTACATCATCCATCGACAATGTAAAATTTGAGAAAGGAAGCACAAGCTCATCTGTTTCACTTTCTA
GTGCCAGTATCGAGCTTGAACAACTGTCTCAAGATTCCTCACGTGTTAAAAATGTGGAGTATGCAGATTTGCATCAAGAACCTCTAGGGGAAAGAACTTCTATTACCATGGATAAAAAAAATACGTTTGCCACAAATGATATGCCTGTTGGAAAATATGCTTCTGCTCTTCAGTCAACTTCTGATAGAATGGACAGTAGA
AAAGAAGATTTAATAGCCAAATCCTCAACATCATCTAATAAATCCAATGAGAGTGGGATTTTGAACACTAGTGGCAAAGAGTGGAATATGAATTTCAAAGATGCAGCTTCTGCTGCTCAGGCAGCTGCTTATTCTGCAGAGAAGGCATGTGAAGCTGCAAAAGCTGCTGCTGATCTTTCAAATCCTAAAAGATTTCTCAA
GGAAGGTTCAACACGAGCCAGGGTTACTCCATTTAGCTTAAGCCAAAGAGGAGAGGAGATTAAAGATTTAAGTAATTCAAGGATAAGTAGAAAACCTAGTTCCAATGTCTTTGTGCAGAGTGAAGAACAGTCCTTTGATGGTCATGAGTTATATGGGGGGGATTATGTTGAAACTCATGCAGAGAATGCAGTGTCTCAGG
AGAGTGGAAATTGGCAGGGCAGTCAAGAGAAAGGAAGAGGGAAGGTTGACAGCGAGTATCAATTGCATGTAGAAAGGCCGAGCATGACGGACCCTTATCGGCAGCCTTCTGATAGAAGTAACCGTGACAATACAACACCTATTGCATTGTCTGAGCGCATTACAAGGGAAGAGAAAGAAAAATTTGATGGTAAAGAAGAG
CATCATCATGTCAGCAGGAAAGATAGTGATGTTAGTGACTCTGATGAGGAACTCACACCTTGGAGAAGAGAAACAGTGATCTCACATACAAACATTCAACCATCAACTAGTTTTTATGATTCAGTTAGGCTGAACTCTAAGAGTGCTGAGGAGGTTGAATTAGAATGCGCTGAAGATAGTAGAAATGCATTTGATAACAT
TAAATTTGATGGTAAAGAGGAGCAGCATCATATCAGCAGGAAAGATAGTGATGCTAGTGACTCTGATGAGGATCTCACACCTTGGAGAAGAGCAACAGTGATGTCACATACAAACAATCAACCATCAACTAGTTTTTATGATTCAGTGAGATTGAACTCTAAGAGTGCTGAGGAGGTCAAATTAAAACGTGCTGAAAACA
GTAGAAATGCAGTTAATGACATCAAATTTAATGGTAAAGAAGAGCAACATCATGTCAGCAAGAAAGATACGGATGTTAGTGATTCTAATGAGGAATTCCCACCTTGGAGAAGAGAAACAATCATCTCACATACAAACACTCCACCATCAGCTAGTTTTTATGACTCGGTTAGACTGAACTCTAAGAGTGCAGAGGAGATC
AAATTAAAACGTACTAAAGATGGTAGAAATGCAGTTAACGACATTAAATTTGATGGTAAAGAAGAGCAGCGTCATGTCAGCAGGAAAGATACTGATGTGAGTGATTCTGATGAAGAATTCCCACCTTGGAGAAGAGATCCAGTGACTTCACATACAAACACTCAACCATCAACTAGCTTTCATGATTCAGTTAGACTGAA
CTCTAAGAATACTGAGGAGATCAAATTAAAACATACTAAACATAGTAGAGATGCATCTAATTACACTCCTCAGTTTGATGACTTGCCCCATGGGGAACCTTCAGATATTAAAGGTATTCCACAATATACTGAGCATGCTTCTGTACTGAAGTCGAGTTCTTTTGTAGAAGAACATAACCAGCTGTATTCTAAACTTCCAC
CATCTCAGCCTCCCAAGCGCCCGCCTCCAGGTGTTTCTACAGCCTCTGAAGCCCACTTTCAATCATCCCTTTCAAATGAAAAGAGCCCTGTAGGAAAGGTTTCAACATCATATGATTCATTGTCTGATTCAAGCTCAAATGGGGATGATTCAAGCTCAAATGGGGACGAGCAGAGTGGTCTAAGAATGAGAGGGAAACCA
AGTTCAACTTCAAATGATTCTGGGAGGCATTTTGTTGAAGCTCATGCTAAAAATGGAAAATCTGAAGGGAACCTGCATCTGCCCAAGCAAAGAAGTAGCAGGCCAGATCATTATCATCAGCCTTCAAATAGAGTCTATCATCATGATAATAAACCTAGTGCAGGAAAATCACAACACTTAAGAAGGGAAGAGAAAGGTCG
GCTTGGTCCTAGTAGTAGTCCTAAAATGCAGGAAACTGTTCCTAGCATCTCTGTTGAAGAATCACCATCAAGGAGAGAAAATCTGAGTTCACATTCCAAAACTCCAGCACCTTACAGTTTTTATGATTCTGATGGCACAACCTCTGAGAGTGGAGAGGAGATTGAGTTGGAAAGATACAATGACAGTACCAGTAGTAAGA
TTAACAAACCTTCTCTCTTCAGTGGCTCCTCACATGATGCATCATCAGACTTCAAACATCAGAATCCAAAACATGCAGAAAATCTCTCTTCACCAACACCAAATCGGGTCACCAAGTCTCATATTCAGTCATCTCAGTCTAATCCAGAGTTTCGACCTCTTAAACAGTCTCTTCCTAGTAAACAGTCTCTTCCCGGTGTA
ACAGTTTCCTCTCAGAATACTCAATCTCCAATTTCTGTTGGAGGGTCAGAAGCATCAAGGGAGGGCCCAGCAAAGGGTGCTTCACATGTTCATCCAAAGCTACCAGATTATGATAATTTGGCTGCCATGTTTGAGGCCATGAAATCTAATAGACGGTGAATTGAAGTTATTCTGAATGGTTCTCACAACCCATCTATTTT
ATTAGAGACTGTCCATGCCTAATCGTATATTCGAAGATCACTTGCAGTGTAGTTACCATTTTACACATTGCTTGGTTTTATATTTAGTTATTGGTCTCTTTGGCGTGTAAGATTTATTATAACCCATTTCAACCATTGTGTATTGAGCAACTTCCAAACACTCATTCAATCATTTTTTTGATCTCTTATTATTTCACAAA
GTCTATATTGATTTTGTTGTTTTCAATTCTTTCAGAGTTGAAGATTGATTTTTGAATAATATGAGCG
Intron 3 GTGAGAAAAA ... TCTACGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.29 | 205 | 30 | 49 |
| A2 | 15.56 | 190 | 17 | 35 |
| A3 | 24.07 | 183 | 23.2 | 58 |
| A4 | 22.48 | 169 | 19.4 | 49 |
| A5 | 28 | 72 | 3.2 | 28 |
| A6 | 10 | 9 | 0.8 | 1 |
| A7 | 25 | 81 | 4 | 27 |
| A8 | 22.58 | 24 | 1.6 | 7 |
| A9 | 18.68 | 82.7 | 16.8 | 19 |
| A10 | 15.6 | 119 | 18.4 | 22 |
>TRINITY_DN118831_c0_g1_i3 from sample A1 / Example spliced isoformCAACAACAACCCTTCCATTATTAAAAAATGAACAAGTTGGACATTTTCTTTTGAAAGCTCTTGGAACCTCAGTCTGACTTTCCTTCCTGAATTGTGATTTACACTAAATAGCTCGAAAAGGCGTATGACTTGTTCTTCTTGTTCTTTATAATCTTTTCCTCCGCCCCAGTTGAGGCCTCTTATAACATATATTACCACAA
ACGTCTCTACTCATACATTTATGACTGGAGTCGGCTGTCGCCTCCATAGCTTCCCTGCCATTAACAATTCAATCCGATTGCCATAATTCAACAGCATCTACTGTTTCTAAGCCGAGGAAGCTATCTCTGCCATCCATGTTCGGTAAAAGTTTCAAGTCTGCAAAATGCAAGACCACCCTAAGGCTTGCAATCTCGCGCAT
GAAATTGATAAAGAACAAGTCAGACTTGCAGATGAAGCAAATGAGGACGGATCTGGCTCAGCTTCTGCGGTCCGGGCAGGAGGCAAGTGCCAGAATTCGGGTTGAACAGATAATAAGAGAGCAGAATATGATGGCGGCACGTGAATTCATTGAACTCTTTTGTGAACTAATTGTGGCACGTTTACCCATTATTGAATCCC
AAAAGAACTGTCCTATTGATTTGCGGGAAGCAATATCAAGTTTGATATTTGCAGCTCCAAGATGTGCTGACATTCCAGAACTTACAGAAATTCGCAGCCTCTTTGGGTCAAAGTATGGTAAAGAATTTGTAGCTGCAGCAGCTGAATTGCGCCCAGATTGTGGTGTAAACAGAACGATTATTGAAAAACTATCTGTGAGA
ACCCCTAGTGGAGAAGTAAAACTGAAGCTCATGAAAGAAATAGCTAAGGAGCAGCAAATTGATTGGAATCCAGCAGACTCTGAAAAAGAACTTTCGAAGCCCCCTGAAGACATGCTTGATGGCCCAAATAAATTTGTTGGTGTTACCAAGATGAATATAGAACCTGTCAAGGAACCCCATCAGTCTGTTTCTCAGCAGAA
ATATGGACCTGAGCCCCAGGTTTCTAATCAAGGTACAAGTAGAATGCCTAACAGTTCAAGAAGTTCTGATTCTGGAGTTGCTGCAACTTACATGGCCCCTACAATGACTAAAGTTGCCCAAGATTTTGCATCTTCAGCTACATCATCCATCGACAATGTAAAATTTGAGAAAGGAAGCACAAGCTCATCTGTTTCACTTT
CTAGTGCCAGTATCGAGCTTGAACAACTGTCTCAAGATTCCTCACGTGTTAAAAATGTGGAGTATGCAGATTTGCATCAAGAACCTCTAGGGGAAAGAACTTCTATTACCATGGATAAAAAAAATACGTTTGCCACAAATGATATGCCTGTTGGAAAATATGCTTCTGCTCTTCAGTCAACTTCTGATAGAATGGACAGT
AGAAAAGAAGATTTAATAGCCAAATCCTCAACATCATCTAATAAATCCAATGAGAGTGGGATTTTGAACACTAGTGGCAAAGAGTGGAATATGAATTTCAAAGATGCAGCTTCTGCTGCTCAGGCAGCTGCTTATTCTGCAGAGAAGGCATGTGAAGCTGCAAAAGCTGCTGCTGATCTTTCAAATCCTAAAAGATTTCT
CAAGGAAGGTTCAACACGAGCCAGGGTTACTCCATTTAGCTTAAGCCAAAGAGGAGAGGAGATTAAAGATTTAAGTAATTCAAGGATAAGTAGAAAACCTAGTTCCAATGTCTTTGTGCAGAGTGAAGAACAGTCCTTTGATGGTCATGAGTTATATGGGGGGGATTATGTTGAAACTCATGCAGAGAATGCAGTGTCTC
AGGAGAGTGGAAATTGGCAGGGCAGTCAAGAGAAAGGAAGAGGGAAGGTTGACAGCGAGTATCAATTGCATGTAGAAAGGCCGAGCATGACGGACCCTTATCGGCAGCCTTCTGATAGAAGTAACCGTGACAATACAACACCTATTGCATTGTCTGAGCGCATTACAAGGGAAGAGAAAGAAAAATTTGATGGTAAAGAA
GAGCATCATCATGTCAGCAGGAAAGATAGTGATGTTAGTGACTCTGATGAGGAACTCACACCTTGGAGAAGAGAAACAGTGATCTCACATACAAACATTCAACCATCAACTAGTTTTTATGATTCAGTTAGGCTGAACTCTAAGAGTGCTGAGGAGGTTGAATTAGAATGCGCTGAAGATAGTAGAAATGCATTTGATAA
CATTAAATTTGATGGTAAAGAGGAGCAGCATCATATCAGCAGGAAAGATAGTGATGCTAGTGACTCTGATGAGGATCTCACACCTTGGAGAAGAGCAACAGTGATGTCACATACAAACAATCAACCATCAACTAGTTTTTATGATTCAGTGAGATTGAACTCTAAGAGTGCTGAGGAGGTCAAATTAAAACGTGCTGAAA
ACAGTAGAAATGCAGTTAATGACATCAAATTTGATGGTAAAGAAGAGCAACGTCATGTCAGCAAGAAAGATACGGATGTTAGTGATTCTAATGAGGAATTCCCACCTTGGAGAAGAGAAACAATCATCTCACATACAAACACTCCACCATCAGCTAGTTTTTATGACTCGGTTAGACTGAACTCTAAGAGTGCAGAGGAG
ATCAAATTAAAACGTACTAAAGATGGTAGAAATGCAGTTAACGACATTAAATTTGATGGTAAAGAAGAGCAGCGTCATGTCAGCAGGAAAGATACTGATGTGAGTGATTCTGATGAAGAATTCCCACCTTGGAGAAGAGATCCAGTGACTTCACATACAAACACTCAACCATCAACTAGCTTTCATGATTCAGTTAGACT
GAACTCTAAGAATACTGAGGAGATCAAATTAAAACATACTAAACATAGTAGAGATGCATCTAATTACACTCCTCAGTTTGATGACTTGCCCCATGGGGAACCTTCAGATATTAAAGGTATTCCACAATATACTGAGCATGCTTCTGTACTGAAGTCGAGTTCTTTTGTAGAAGAACATAACCAGCTGTATTCTAAACTTC
CACCATCTCAGCCTCCCAAGCGCCCTCCTCCAGGTGTTTCTACAGCCTCTGAAGCCCACTTTCAATCATCCCTTTCAAATGAAAAGAGCCCTCTAGGAAAGGTTTCAACATCATATGATTCATTGTCTGATTCAAGCTCAAATGGGGATGATTCAAGCTCAAATGGGGACGAGCAGAGTGGTCTAAGAATGAGAGGGAAA
CCAAGTTCAACTTCAAATGATTCTGGGAGGCATTTTGTTGAAGCTCATGCTAAAAATGGAAAATCTCAAGGGAACCTACATCTGCCCAAGCAAAGAAGTAGCAGGCCAGATCATTATCATCAGCCTTCAAATAGAGTCTATCATCATGATAATAAACCTAGTGCAGGAAAATCACAACACTTAAGAAGGGAAGAGAAAGG
TCGGCTTGGTCCTAGTAGTAGTCCTAAAATGCAGGAAACTGTTCCTAGCATCTCTGTTGAAGAATCACCATCAAGGAGAGAAAATCTGAGTTCACATTCCAAAACTCCAGCACCTTACAGTTTTTATGATTCTGATGGCACAACCTCTGAGAGTGGAGAGGAGATTGAGTTGGAAAGATACAATGACAGTACCAGTAGTA
AGATTAACAAACCTTCTCTCTTCAGTGGCTCCTCACATGATGCATCATCAGACTTCAAACATCAGAATCCAAAACATGCAGAAAATCTCTCTTCACCAACACCAAATCGGGTCACCAAGTCTCATATTCAGTCATCTCAGTCTAATCCAGAGTTTCGACCTCTTAAACAGTCTCTTCCTAGTAAACAGTCTCTTCCCGGT
GTAACAGTTTCCTCTCAGAATACTCAATCTCCAATTTCTGTTGGAGGGTCAGAAGCATCAAGGGAGGGCCCAGCAAAGGGTGCTTCACATGTTCATCCAAAGCTACCAGATTATGATAATTTGGCTGCCATGTTTGAGGCCATGAAATCTAATAGACGGTGAATTGAAGTTATTCTGAATGGTTCTCACAACCCATCTAT
TTTATTAGAGACTGTCCATGCCTAATCGTATATTCGAAGATCACTTGCAGTGTAGTTACCATTTTACACATTGCTTGGTTTTATATTTAGTTATTGGTCTCTTTGGCGTGTAAGATTTATTATAACCCATTTCAACCATTGTGTATTGAGCAACTTCCAAACACTCATTCAATCATTTTTTTGATCTCTTATTATTTCAC
AAAGTCTATATTGATTTTATTGTTTTCAATTCTTTAAGAGTTGAAGATTGATTTTTGAATAATATGAGCTATAATTATGAAAGTCTAATTGTAGTATAAGTTAAAGATAAATTGAGGAAGACAGTGC
>TRINITY_DN118831_c0_g1_i7 from sample A1 / Example unspliced isoform:CAACAACAACCCTTCCATTATTAAAAAATGAACAAGTTGGACATTTTCTTTTGAAAGCTCTTGGAACCTCAGTCTGACTTTCCTTCCTGAATTGTGATTTACACTAAATAGCTCGAAAAGGCGTATGACTTGTTCTTCTTGTTCTTTATAATCTTTTCCTCCGCCCCAGTTGAGGCCTCTTATAACATATATTACCACAA
ACGTCTCTACTCATACATTTATGACTGGAGTCGGCTGTCGCCTCCATAGCTTCCCTGCCATTAACAATTCAATCCGATTGCCATAATTCAACAGCATCTACTGTTTCTAAGCCGAGGAAGCTATCTCTGCCATCCATGTTCGGTAAAAGTTTCAAGTCTGCAAAATGgtgagaaaaattatgcctattcttttcccaatc
aattcattcttgatcttcttagctttttgagcttttacagcgtttcttcacagagattaatttattgagttgattttagataatattgttaaagacgactgtgcacaatgatcccagtagtattttcgatcagttgagcatatagtgattatatcgagtcccaattgaagtaatgggtttggtcttaaatttgtttggat
gctttgttacataattttaatggagagtacttgttgttatctacggcagCAAGACCACCCTAAGGCTTGCAATCTCGCGCATGAAATTGATAAAGAACAAGTCAGACTTGCAGATGAAGCAAATGAGGACGGATCTGGCTCAGCTTCTGCGGTCCGGGCAGGAGGCAAGTGCCAGAATTCGGGTTAGTATGCGCTGCCTT
GGTTTTGCTAATTAAGCTCAATTGTGTGTCAATAACCTGTTAGTGACTTTAGACAAGGTCAAGTGGTTAAATCAAAGTAATTTCCGTGAAGACCTGGTACAAAACCCCCGAGACATGTTGAGTCAATGTGGCCATCAAGGTTGAACACAAAACCCCCAAGATATGTTGTTGAGTTAACGTGGCCATCAGAGTTGACCACT
TCATCTGGGTGTTGCGTTATCTCAACAGATACAACAACGGACACGGTTAGGTGCAAATCCTGGGTGAATTTGGCATAACAGACACCCTTTGGTTTTGGCATCTAAGCCAAAGGTAACGCCTAAGGCCATTTATCAACCCAAAAAACATGCTACCGATTTAAATCAATTGAAATTGAACAGTGGTTGGTCCTTTAAAGCCT
GCAGGTTGCACGTTTTCCCTTCCCCTGTAAATTGCTTTGTTTTGAAATTGATGCAAAATCTGTAGTTCTTATAAATTGGTTCTTACCATTAGCAGATCTATTTCTTTATTTTTTAGGAAATCTTTGTGGAGAAATCTAAGGGATACTTTTTCAGATGACATCCCAATAAATCTGTCAGCATAAATTAATGCACCTAACTT
AGGTAGATTTGAACCAAATACCTGCTAACATGGAACTAGCTAAATGCCGAACAACATTGGTAACAACTGATTGAACTATCTACCAACATAGATCCACC