NA ----> NA

Intron 1 GTTTCTTTGC ... TTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	1	2	2
A2	0	1	0	0
A3	-1	0	0	0
A4	-1	0	0	0
A5	-1	0	0	0
A6	33.33	18	11	7
A7	50	12	14	10
A8	42.11	44	27	37
A9	25	57	16	22
A10	42.34	32	23	24

>TRINITY_DN42283_c2_g2_i3 from sample A9 / Example spliced isoform

GCCATGTCTCAAGATTTCTCCAGTAATACACTCACAGTTGTTGCCACCTATATGACATAAATCTTTAATGAATTTCATAAAGAAAATGTATGAAGAAGATATTTAGTCAGATAATGCTGCCCAGATTGCTTCTAACGCTCAGCTTTATTCATCAAGAATCGTCCGACTTCCACTTCATAGATTACACGCCTGAAATCGCC
AAGAACTGGATTAAGACTGAAGGAGAAAAATAGATTTACCTGAAGGTGAGGTGATTACGATCATGTGAAGGAGAAAACTGTGCCATGAAGGAAGTGGAAATTTCCACCGGAATCGCGTCATCTTGCCAGTGCATCACCAAATAAGAGATGAAAACCAAAACTATCTGTGGATGAAGCGACGAAGGACATGCGATCATAAC
CTTCTGATGAAGATTGTATTATAGCATAAATTTGAGATTTGGATTCATAGGTTGATGTAAGTCAGCCAAAGATCGTGGAAACAAAAAGACAGAGGGAATTGGTAGCTTTATGGGATTCTTCAACTGAATGATATCGCCTAGTTAAATTGTGGAGCACTTGATGGGGCGATCATGATCTCTCGAAATTGTTAGAAATAGTA
ATTACTTCAGTTAACATTAGTTTCTATTCTTGAAGTTTAGTTAATAAATGCAAGAGTATGCTTTACATGCATGCAAAAGCTAGGTTAGAGTTTTTAGGGTTTCCATAAGTGTTTAAATACACATTACATTATTGTTTGTATTACATTAGTTGATCTTGGTTTATGAATAAAGATTGAAGAGCCGTAGCTCATTTCGCATT
AAAAAA

>TRINITY_DN42283_c2_g2_i1 from sample A9 / Example unspliced isoform:

GCCATGTCTCAAGATTTCTCCAGTAATACACTCACAGTTGTTGCCACCTATATGACATAAATCTTTAATGAATTTCATAAAGAAAATGTATGAAGAAGATATTTAGTCAGATAATGCTGCCCAGATTGCTTCTAACGCTCAGCTTTATTCATCAAGAATCGTCCGACTTCCACTTCATAGATTACACGCCTGAAATCGCC
AAGAACTGgtttctttgctttgttttattcagtttgattttaatctagttttccaagtttagattgtatttttagttttagttcgatttaaaaattttaatctgttttttttttttttttgcagGATTAAGACTGAAGGAGAAAAATAGATTTACCTGAAGGTGAGGTGATTACGATCATGTGAAGGAGAAAACTGTGCC
ATGAAGGAAGTGGAAATTTCCACCGGAATCGCGTCATCTTGCCAGTGCATCACCAAATAAGAGATGAAAACCAAAACTATCTGTGGATGAAGCGACGAAGGACATGCGATCATAACCTTCTGATGAAGATTGTATTATAGCATAAATTTGAGATTTGGATTCATAGGTTGATGTAAGTCAGCCAAAGATCGTGGAAACAA
AAAGACAGAGGGAATTGGTAGCTTTATGGGATTCTTCAACTGAATGATATCGCCTAGTTAAATTGTGGAGCACTTGATGGGGCGATCATGATCTCTCGAAATTGTTAGAAATAGTAATTACTTCAGTTAACATTAGTTTCTATTCTTGAAGTTTAGTTAATAAATGCAAGAGTATGCTTTACATGCATGCAAAAGCTAGG
TTAGAGTTTTTAGGGTTTCCATAAGTGTTTAAATACACATTACATTATTGTTTGTATTACATTAGTTGATCTTGGTTTATGAATAAAGATTGAAGAGCCGTAGCTCATTTCGCATTAAAAAA

Intron 2 GTTTCTTTGC ... TTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	1	2	2
A2	0	1	0	0
A3	-1	0	0	0
A4	-1	0	0	0
A5	-1	0	0	0
A6	33.33	18	11	7
A7	50	12	14	10
A8	42.11	44	27	37
A9	25	57	16	22
A10	42.34	32	23	24

>TRINITY_DN45815_c0_g3_i2 from sample A8 / Example spliced isoform

CGAAGTCACAGTGCTTACATAAGACTTGATTAAAAAAGGATTGTTGCCACGTCTCAAGATTTCTCCAGTAATACACTCACAGTTGTTGCCACCTATATGACATAAATCTTTAATGAATTTCATAAAGAAAATGTATGAAGAAGATATTTAGTCAGATAATGCTGCCCAGATTGCTTCTAACGCTCAGCTTTATTCATCAA
GAATCGTCCGACTTCCACTTCATAGATTACACGCCTGAAATCGCCAAGAACTGGATTAAGACTGAAGGAGAAAAATAGATTTACCTGAAGGTGAGGTGATTACGATCATGTGAAGGAGAAAACTGTGCCATGAAGGAAGTGGAAATTTCCACCGGAATCGCGTCATCTTGCCAGTGCATCACCAAATAAGAGATGAAAAC
CAAAACTATCTGTGGATGAAGCGACGAAGGACATGCGATCATAACCTTCTGATGAAGATTGTATTATAGCATAAATTTGAGATTTGGATTCATAGGTTGATGTAAGTCAGCCAAAGATCGTGGAAACAAAAAGACAGAGGGAATTGGTAGCTTTATGGGATTCTTCAACTGAATGATATCGCCTAGTTAAATTGTGGAGC
ACTTGATGGGGCGATCATGATCTCTCGAAATTGTTAGAAATAGTAATTACTTCAGTTAACATTAGTTTCTATTCTTGAAGTTTAGTTAATAAATGCAAGAGTATGCTTTACATGCATGCAAAAGCTAGGTTAGAGTTTTTAGGGTTTCCATAAGTGTTTAAATACACATTACATTATTGTTTGTATTACATTAGTTGATC
TTGGTTTATGAATAAAGATTGAAGAGCCGTAGCTCATTTCGCAT

>TRINITY_DN45815_c0_g3_i1 from sample A8 / Example unspliced isoform:

CGAAGTCACAGTGCTTACATAAGACTTGATTAAAAAAGGATTGTTGCCACGTCTCAAGATTTCTCCAGTAATACACTCACAGTTGTTGCCACCTATATGACATAAATCTTTAATGAATTTCATAAAGAAAATGTATGAAGAAGATATTTAGTCAGATAATGCTGCCCAGATTGCTTCTAACGCTCAGCTTTATTCATCAA
GAATCGTCCGACTTCCACTTCATAGATTACACGCCTGAAATCGCCAAGAACTGgtttctttgctttgttttattcagtttgattttaatctagttttccaagtttagattgtatttttagttttagttcgatttaaaaattttaatctgtttttttttttttttttttgcagGATTAAGACTGAAGGAGAAAAATAGATT
TACCTGAAGGTGAGGTGATTACGATCATGTGAAGGAGAAAACTGTGCCATGAAGGAAGTGGAAATTTCCACCGGAATCGCGTCATCTTGCCAGTGCATCACCAAATAAGAGATGAAAACCAAAACTATCTGTGGATGAAGCGACGAAGGACATGCGATCATAACCTTCTGATGAAGATTGTATTATAGCATAAATTTGAG
ATTTGGATTCATAGGTTGATGTAAGTCAGCCAAAGATCGTGGAAACAAAAAGACAGAGGGAATTGGTAGCTTTATGGGATTCTTCAACTGAATGATATCGCCTAGTTAAATTGTGGAGCACTTGATGGGGCGATCATGATCTCTCGAAATTGTTAGAAATAGTAATTACTTCAGTTAACATTAGTTTCTATTCTTGAAGT
TTAGTTAATAAATGCAAGAGTATGCTTTACATGCATGCAAAAGCTAGGTTAGAGTTTTTAGGGTTTCCATAAGTGTTTAAATACACATTACATTATTGTTTGTATTACATTAGTTGATCTTGGTTTATGAATAAAGATTGAAGAGCCGTAGCTCATTTCGCAT

Intron 3 GTTTCTTTGC ... TTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	1	2	2
A2	0	1	0	0
A3	-1	0	0	0
A4	-1	0	0	0
A5	-1	0	0	0
A6	33.33	18	11	7
A7	50	12	14	10
A8	42.11	44	27	37
A9	25	57	16	22
A10	42.34	32	23	24

>TRINITY_DN46891_c2_g5_i2 from sample A10 / Example spliced isoform

GTGAAGTTAAGCAGGGTTACTCGATAAAGGGAAGTCACAGTGCTTACATAAGACTTGATTAAAAAAGGATTGTTGCCACGTCTCAAGATTTCTCCAGTAATACACTCACAGTTGTTGCCACCTATATGACATAAATCTTTAATGAATTTCATAAAGAAAATGTATGAAGAAGATATTTAGTCAGATAATGCTGCCCAGAT
TGCTTCTAACGCTCAGCTTTATTCATCAAGAATCGTCCGACTTCCACTTCATAGATTACACGCCTGAAATCGCCAAGAACTGGATTAAGACTGAAGGAGAAAAATAGATTTACCTGAAGGTGAGGTGATTACGATCATGTGAAGGAGAAAACTGTGCCATGAAGGAAGTGGAAATTTCCACCGGAATCGCGTCATCTTGC
CAGTGCATCACCAAATAAGAGATGAAAACCAAAACTATCTGTGGATGAAGCGACGAAGGACATGCGATCATAACCTTCTGATGAAGATTGTATTATAGCATAAATTTGAGATTTGGATTCATAGGTTGATGTAAGTCAGCCAAAGATCGTGGAAACAAAAAGACAGAGGGAATTGGTAGCTTTATGGGATTCTTCAACTG
AATGATATCGCCTAGTTAAATTGTGGAGCACTTGATGGGGCGATCATGATCTCTCGAAATTGTTAGAAATAGTAATTACTTCAGTTAACATTAGTTTCTATTCTTGAAGTTTAGTTAATAAATGCAAGAGTATGCTTTACATGCATGCAAAAGCTAGGTTAGAGTTTTTAGGGTTTCCATAAGTGTTTAAATACACATTA
CATTATTGTTTGTATTACATTAGTTGATCTTGGTTTATGAATAAAGATTGAAGAGCCGTAGCTCATTTCGCATAA

>TRINITY_DN46891_c2_g5_i1 from sample A10 / Example unspliced isoform:

GTGAAGTTAAGCAGGGTTACTCGATAAAGGGAAGTCACAGTGCTTACATAAGACTTGATTAAAAAAGGATTGTTGCCACGTCTCAAGATTTCTCCAGTAATACACTCACAGTTGTTGCCACCTATATGACATAAATCTTTAATGAATTTCATAAAGAAAATGTATGAAGAAGATATTTAGTCAGATAATGCTGCCCAGAT
TGCTTCTAACGCTCAGCTTTATTCATCAAGAATCGTCCGACTTCCACTTCATAGATTACACGCCTGAAATCGCCAAGAACTGgtttctttgctttgttttattcagtttgattttaatctagttttccaagtttagattgtatttttagttttagttcgatttaaaaattttaatctgtttttttttttttttttgcagG
ATTAAGACTGAAGGAGAAAAATAGATTTACCTGAAGGTGAGGTGATTACGATCATGTGAAGGAGAAAACTGTGCCATGAAGGAAGTGGAAATTTCCACCGGAATCGCGTCATCTTGCCAGTGCATCACCAAATAAGAGATGAAAACCAAAACTATCTGTGGATGAAGCGACGAAGGACATGCGATCATAACCTTCTGATG
AAGATTGTATTATAGCATAAATTTGAGATTTGGATTCATAGGTTGATGTAAGTCAGCCAAAGATCGTGGAAACAAAAAGACAGAGGGAATTGGTAGCTTTATGGGATTCTTCAACTGAATGATATCGCCTAGTTAAATTGTGGAGCACTTGATGGGGCGATCATGATCTCTCGAAATTGTTAGAAATAGTAATTACTTCA
GTTAACATTAGTTTCTATTCTTGAAGTTTAGTTAATAAATGCAAGAGTATGCTTTACATGCATGCAAAAGCTAGGTTAGAGTTTTTAGGGTTTCCATAAGTGTTTAAATACACATTACATTATTGTTTGTATTACATTAGTTGATCTTGGTTTATGAATAAAGATTGAAGAGCCGTAGCTCATTTCGCATAA