NA ----> NA
Intron 1 GTGGGAATCT ... TCATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.41 | 49 | 189 | 1 |
| A2 | 78.67 | 45 | 166 | 0 |
| A3 | 87.04 | 28 | 188 | 4 |
| A4 | 82.24 | 19 | 88 | 0 |
| A5 | 78.95 | 32 | 120 | 1 |
| A6 | 84.62 | 388 | 2135 | 2 |
| A7 | 84.57 | 291 | 1595 | 2 |
| A8 | 83.96 | 451 | 2360 | 2 |
| A9 | 84.41 | 330 | 1787 | 0 |
| A10 | 87.72 | 151 | 1079 | 0 |
>TRINITY_DN43984_c0_g1_i2 from sample A7 / Example spliced isoformTTTAGGTTGTTAAACGTGGGAGCCGTGGGAGGGTGGTGGGTCTGAATATTTGGCCTTTGGAGAAGAGAAGAGGAGAGAAGTGAGAGCGTCCTTGCAAGCTTAAGCTAAGCCAAGCTTAGCATTTTCAAGGGATTTTGTAAGGGCGCCTCCTCCTCAGTCTTCTCCTTGCGGAGTTTCACAGGGATTTTTCTCGTGTTTTG
TGTCTGATTTCCCTGCGACAGGCATCTGAGCTTTAAAAGGTGTCGGTTTCTGTGAATAGCCGGCGATTTTGTATCTGATAACTAGAGGTAAAATACGTTCTGAGACTGAGGCCAGAACACAAAATTTGCTATCAATATGGAAGCCCGTGCAAGAAGATTTGGTGGCATGCAAGAGCTTGCTACACTTAATGGTCTAGAAT
GCTTTGCAGACAGGAATGTGAGAGTTAGACAAAGGAGTGGTATCCACAGAGATGTGAACCAGAGACAAGTAATCTGCCCTGAACCTCGGAGATTGCCCATTGTGCCTTCTTTAGCAGATGAAATTTGCAAATCTGGCCGCAGGCTTCATAGTTATTCAGCAATGCAAACAGAAGGAGAAGCATGCCGCGAGATTCTAGAC
ATTTTTTTCGGCAAGAGTGGATATGGAGATCAGGCAAATGTCAACACCTCTCTTCCACACTTTTGTGGATCACCTCCTAGTCGATCCCACAATCCATTAATTCATGATGTAAAGTTTATAAAGAAGGAGCTGGCACCTCCACCTGTCAGTGTCTCACAGATGAACTCTTGTGGTGCATCATTTGGATCAAATCCCTCGGT
CAGGGTGGAAGGTTTTGCCTGTTCAAGCTCAGAAAAGCACTGCATTGTGTCAGCCCTTGCTTGATCCCCCCTGCCTCCTTTTTGAGGGACAGCTCCAAACTTTTGTTTCTGTACAATGCTGTTTGGAATCAGGATTGAGTGGTTGCTCTGGCAAGTGCACCAACTGTAATTTTCTATGTTTGAGAGGTGGGAAGCTCGCC
AAATGAGACTGATTTTTGCACATGCCAATGAGGAGGCTTTCATATACTTGCTGTAGAGTATTATTGTACACAGGATTTTGTTTGTGAACACTGAGGATAGTTGTAGGGATAGGTATTTCTTGAGTGATTTTTGTCAGAACTCGAAAGTGAGAACATTCAGTTCAATTTACGGTGATAATTGTACAGGCAATTTGATAGCG
CACGTCTTGGTCGTTGGAAGTGGTAGTCTCAATTTGTTGGCATTGATCGTTTGC
>TRINITY_DN43984_c0_g1_i1 from sample A7 / Example unspliced isoform:TTTAGGTTGTTAAACGTGGGAGCCGTGGGAGGGTGGTGGGTCTGAATATTTGGCCTTTGGAGAAGAGAAGAGGAGAGAAGTGAGAGCGTCCTTGCAAGCTTAAGCTAAGCCAAGCTTAGCATTTTCAAGGGATTTTGTAAGGGCGCCTCCTCCTCAGTCTTCTCCTTGCGGAGTTTCACAGGGATTTTTCTCGTGTTTTG
TGTCTGATTTCCCTGCGACAGGCATCTGAGCTTTAAAAGGTGTCGGTTTCTGTGAATAGCCGGCGATTTTGTATCTGATAACTAGAGGTAAAATACGTTCTGAGACTGAGGCCAGAACACAAAATTTGCTATCAATATGGAAGCCCGTGCAAGAAGATTTGGTGGCATGCAAGAGCTTGCTACACTTAATGGTCTAGAAT
GCTTTGCAGACAGGAATGTGAGAGTTAGACAAAGGAGTGGTATCCACAGAGATGTGAACCAGAGACAAGTAATCTGCCCTGAACCTCGGAGATTGCCCATTGTGCCTTCTTTAGCAGATGAAATTTGCAAATCTGGCCGCAGGCTTCATAGTTATTCAGCAATGCAAACAGAAGGAGAAGCATGCCGCGAGATTCTAGAC
ATTTTTTTCGGCAAGAGTGGATATGGAGATCAGGCAAATGTCAACACCTCTCTTCCACACTTTTGTGGATCACCTCCTAGTCGATCCCACAATCCATTAATTCATGATGTAAAGTTTATAAAGAAGGAGCTGGCACCTCCACCTGTCAGTGTCTCACAGATGAACTCTTGTGGTGCATCATTTGGATCAAATCCCTCGGT
CAGGGTGGAAGGTTTTGCCTGTTCAAGCTCAGAAAAGCACTGCATTGTGTCAGCCCTTGCTTGATCCCCCCTGCCTCCTTTTTGAGGGACAGCTCCAAACTTTTGTTTCTGTACAATGCTGTTTGGAATCAGGATTGAGTGGTTGCTCTGGCAAGTGCACCAACTGTAATTTTCTATGTTTGAGAGGTGGGAAGCTCGCC
AAATGAGACTGATTTTTGCACATGCCAATGAGGAGGCTTTCATATACTTGCTGTAGAGTATTATTGTACACAGGATTTTGTTTGTGAACACTGAGGATAGTTGTAGGGATAGGTATTTCTTGAGTGATTTTTGTCAGAACTCGAAAGTGAGAACATTCAGTTCAATTTACGGTGATAATTGTACAGgtgggaatcttgta
attatgtaattaaaacattcagctagactgcctgttcttatgcacagctgtatctgtaacaatacttgagaggcaggagtaattgatgatgagctttgtgaatgtagttagatcctgcttatgagtggagtatagtagatttttgtcattttgaaaaaaggcctgaaggctttcttttccctcggtgattgtgtcctgta
gacagctgtaaaggacctgaatgcctgtgagtcagtcttgcaaagtaattgtcggctttttgtttcatgtataatggattaatccagttaacaaatcctgttatgcacaaattaggtatgttattttgatgcgatgttttgtcaactcttttctactcttggttatgaagctgcctatcatttgcagGCAATTTGATAGC
GCA