sp|Q96288|BBX24_ARATH ----> B-box zinc finger protein 24

Intron 1 GTTCGTTGTC ... GTGCATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.08	15	5	4
A2	14.29	6	0	2
A3	15.79	8	0	3
A4	20	14	5	2
A5	4.35	11	0	1
A6	15.61	73	16	11
A7	6.19	91	6	6
A8	8.07	74	1	12
A9	5.93	119	3	12
A10	8.61	122	9	14

>TRINITY_DN46361_c0_g2_i2 from sample A8 / Example spliced isoform

AAGATGAGCGAATGAAGGAACAATTGTATGGAATGTTAAATGCTCACGGCTGTTGAAAGTTCCTTCCTAAACCTTATATTAAGATCCGATGGCCGAAGCTAACAGCCTAGCATCCAGGAAAGATCCGGGTCTATTATTCGATGCCATATATGCAGGAGAAGGTTGCTATTGTTTTCTGTCTCGACGATCGTGATATGCCG
TGCTGAGACTGCGATGAATCCGTTCACATTAGCAGCCAAACACCAGAGGTTCCTGGCCACTGGCATTAGGGTTGCTCTCAACGGCTGTTATACAGGGAGATCCGAACGGTGTAGGAGAATTCGACTGGGGGTAGATGATTTCGACATTTGGGACTGTTCGTGCAAGACCAAGACTAAGAAGAGGTTTTAGATGCCCTTCA
CCATGAGGTACGTAGGATTGAACTAGTCTGACTGAATAAGCTTTTCTTCATTGGCGTTGCTAGAACAAACACTGTCCCAAAAACTCCACAATGGTCCCTCTACGACACAACTCGTTTGAAGTTGAGATAATGTCCTTCTCAACCTAAGACTTCGAGTTGGAAGATTCCAGAGGTCTATGTTTTCCAGAATTCTGCCATAC
TTGCGTTCCTCTGAGTTGCAGTCGTGGCTCTAGGTGAAGCGTTAAGACGCAGCACTCCTTGTTACTTTCTAAACTAAAGCGGAATAATTCCATGCAGAGCCAAATCTCTTCCATAATGTATCAAAATATTCGCCATAGCAAGAGTGGCAATGAAATTATCCAAAACGCGAATGGTTTGAAGAACTTCATATTTCGTTCAA
TTTCATTTCATCCCTAATAAATGTTTAGCGGTAATCTAATGTGGCCAGTAGTGTTTTCTATGTATGTGTCTTTATCATATATTAAAAATCATTTTTAT

>TRINITY_DN46361_c0_g2_i4 from sample A8 / Example unspliced isoform:

AAGATGAGCGAATGAAGGAACAATTGTATGGAATGTTAAATGCTCACGGCTGTTGAAAGTTCCTTCCTAAACCTTATATTAAGATCCGATGGCCGAAGCTAACAGCCTAGCATCCAGGAAAGATCCGGGTCTATTATTCGATGCCATATATGCAGGAGAAGGTTGCTATTGTTTTCTGTCTCGACGATCGTGATATGCCG
TGCTGAGACTGCGATGAATCCGTTCACATTAGCAGCCAAACACCAGAGGTTCCTGGCCACTGGCATTAGGGTTTCTCTCAACGGCTATTATACATGGAGATCTGAACGGTGTAGGAGAATTCGACTTAGGGTAGATGATTTCGACATTTGGGACTGTTCGTGCAAGACCAAGACTAAGAAGAGGTTTTAGATGCCCTTCA
CCATGAGgttcgttgtctctttgcgccatgaatgtaaatttcatttactgtcgaaaaatccattcccacagagttatgttgcgtctcgatctctatgtgcgagtatatatatattgatggcaaccgtaagtattgtttttgtgcatgcagGTACGTAGGATTGAACTAGTCTGACTGAATAAGCTTTTCTTCATTGGCGT
TGCTAGAACAAACACTGTCCCAAAAACTCCACAATGGTCCCTCTACGACACAACTCGTTTGAAGTTGAGATAATGTCCTTCTCAACCTAAGACTTCGAGTTGGAAGATTCCAGAGGTCTATGTTTTCCAGAATTCTGCCATACTTGCGTTCCTCTGAGTTGCAGTCGTGGCTCTAGGTGAAGCGTTAAGACGCAGCACTC
CTTGTTACTTTCTAAACTAAAGCGGAATAATTCCATGCAGAGCCAAATCTCTTCCATAATGTATCAAAATATTCGCCATAGCAAGAGTGGCAATGAAATTATCCAAAACGCGAATGGTTTGAAGAACTTCATATTTCGTTCAATTTCATTTCATCCCTAATAAATGTTTAGCGGTAATCTAATGTGGCCAGTAGTGTTTT
CTATGTATGTGTCTTTATCATATATTAAAAATCATTTTTAT

Intron 2 GTTCGTTGGC ... ATGCATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	36	16	9	4
A2	33.33	6	3	1.3
A3	6.67	14	1	5.7
A4	36.84	12	7	2.7
A5	18.75	13	3	2.7
A6	13.82	106	17	12.3
A7	12.86	122	18	9.3
A8	13.27	85	13	10.7
A9	15.57	141	26	13.3
A10	12.88	142	21	16

>TRINITY_DN43643_c0_g5_i2 from sample A6 / Example spliced isoform

TCCAGTTTAATTGGCCGACTAGGGTTTAATAGTTTGCTAACCAAACGGTTAATCACTGCACTGGAGGCGGTGGTTGTCACGATGAGCGAATGAAGGAACAGTTGTATGGAATGTTAAATGCTCACGATGTGTGGCAGGGGAGATGCCATGTCGTGGCAGCAGTCAATGCGATCTTGCAGTGGTTGAAAGTTCCTGCTGAA
CCTTATATTAAGATCCCATGGCCGAAGCTAACAGCCCAGCAGCCAAGAAATCCCCCGGTCTATTATTCGGTGCCATATATGCAGGAGAAGGCTGTTATTGTTTTCTGTCTCGAGGATCGTGCTATGCTGTGTCGAGACTGCGATGAATCCATTCACATTAGCAGCCCAAAACATTAGAAGCAAAACACCAGAGGTTCCTG
GCCACTGGCATTAGGGTTGCTCTCAACGACTGTTATACAGGGAGATCCGAACGGTGTAGGAGAATTCGACTGGGGGGTAGATGATTTCGAGATTTGGGGATGTTCACGCAAGACCAAGACCAAGAAGAGGTTTTAGATGCCCTTCTCCATGAGGTATGTAGGATTGAACTAGGCTGACTGAATAAGATTTTCTTCATTGG
CGTTGGTAGAACAAACACTGTCCCAAAAACTCCACGATGGTCCCTCTACAACACAACTCGTTTGAAGCTGAGATAATGTCCTTCTCAACCTAAGACTTCGAGTTGGAAGCCTCCAAAGGTCTGTGTTTTCCAGAAGTCTCTCATACTTGCGTTCCTCTGAGTTGCAGTCGTGGCTGCAGGTGAAGCATTAAGACGCAGCA
CTCTTTGTTACTTTCTGAACTGAAGCGGAAGAATTCCATGCAGACAAATCTCTTCCATAATGTATCAAAATATTCGCCATAGCAAGAGTGGTAATGAAATTATCCAAAATGTGAATGGTTTGAAGAACTTGATATTTCGTTCGATTTCATTTCATCCCTAATAATTTTTTTAGCGGTAATCTAATGTGTCCAGA

>TRINITY_DN43643_c0_g5_i1 from sample A6 / Example unspliced isoform:

TCCAGTTTAATTGGCCGACTAGGGTTTAATAGTTTGCTAACCAAACGGTTAATCACTGCACTGGAGGCGGTGGTTGTCACGATGAGCGAATGAAGGAACAGTTGTATGGAATGTTAAATGCTCACGATGTGTGGCAGGGGAGATGCCATGTCGTGGCAGCAGTCAATGCGATCTTGCAGTGGTTGAAAGTTCCTGCTGAA
CCTTATATTAAGATCCCATGGCCGAAGCTAACAGCCCAGCAGCCAAGAAATCCCCCGGTCTATTATTCGGTGCCATATATGCAGGAGAAGGCTGTTATTGTTTTCTGTCTCGAGGATCGTGCTATGCTGTGTCGAGACTGCGATGAATCCATTCACATTAGCAGCCCAAAACATTAGAAGCAAAACACCAGAGGTTCCTG
GCCACTGGCATTAGGGTTGCTCTCAACGACTGTTATACAGGGAGATCCGAACGGTGTAGGAGAATTCGACTGGGGGGTAGATGATTTCGAGATTTGGGGATGTTCACGCAAGACCAAGACCAAGAAGAGGTTTTAGATGCCCTTCTCCATGAGgttcgttggctctttgcgccatgattgtaaatttcatttactgtata
aaaagccattcccgcagagttatgttgcgtctcgatctctatgtgcgagtatatatatatatatattgatggcaaccgcaagtattgtttttatgcatgcagGTATGTAGGATTGAACTAGGCTGACTGAATAAGATTTTCTTCATTGGCGTTGGTAGAACAAACACTGTCCCAAAAACTCCACGATGGTCCCTCTACAA
CACAACTCGTTTGAAGCTGAGATAATGTCCTTCTCAACCTAAGACTTCGAGTTGGAAGCCTCCAAAGGTCTGTGTTTTCCAGAAGTCTCTCATACTTGCGTTCCTCTGAGTTGCAGTCGTGGCTGCAGGTGAAGCATTAAGACGCAGCACTCTTTGTTACTTTCTGAACTGAAGCGGAAGAATTCCATGCAGACAAATCT
CTTCCATAATGTATCAAAATATTCGCCATAGCAAGAGTGGTAATGAAATTATCCAAAATGTGAATGGTTTGAAGAACTTGATATTTCGTTCGATTTCATTTCATCCCTAATAATTTTTTTAGCGGTAATCTAATGTGTCCAGA