sp|F4JCU0|SUA_ARATH ----> SUPPRESSOR OF ABI3-5
Intron 1 GTTTGCTATT ... CTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.73 | 179 | 44 | 25 |
| A2 | 24.49 | 222 | 72 | 20 |
| A3 | 23.7 | 161 | 50 | 15 |
| A4 | 22.42 | 173 | 50 | 9 |
| A5 | 12.63 | 83 | 12 | 3 |
| A6 | 28.42 | 68 | 27 | 6 |
| A7 | 20.81 | 137 | 36 | 15 |
| A8 | 29 | 71 | 29 | 5 |
| A9 | 23.21 | 129 | 39 | 13 |
| A10 | 24.88 | 160 | 53 | 20 |
>TRINITY_DN37647_c0_g1_i2 from sample A8 / Example spliced isoformCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCCAACTGCCTCCTATACTGCTATTTACCCCCA
AAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGATCAAGAACCTTAACAGGGGTTTCGGAAGATA
TTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGTATGACCCACACGATCAATATGGTTTTCTCCTTAGTCTCCTATGGGGCTGATTTCCATGATAATTGGGTCATGTGATTCTCCTCCATATTTACATCCATCCTCATAACAGCAAGCAAGGAAGCCCACCCCCATTGAGGATAA
TGGATTTCTCTGCTGAGAGCTCACTCATAACAATATTAGTTGCTGACTTCCCTTATTCTGTTGGATGAACAGGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGA
GCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTC
GTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGACGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGAT
TATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCG
ATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGC
GGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGAT
GGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCG
CACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACC
TCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGC
CTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTG
GGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGA
AAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTC
TTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATT
GTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTT
CAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTA
GACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGA
AGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTG
GTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGA
TGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGA
TTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGACAGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGTAAC
GTAGAGGAATGGAATTTTGACGGAGC
>TRINITY_DN37647_c0_g1_i1 from sample A8 / Example unspliced isoform:CTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCCAACTGCCTCCTATACTGCTATTTACCCCCA
AAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGATCAAGAACCTTAACAGGGGTTTCGGAAGATA
TTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGAGCTGTTAGAGAGAGA
CAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACT
TTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGACGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTG
TTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGG
TCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCAC
CATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGAT
GGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCA
GTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTG
ACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCA
ATTGAAGCTGCAACCTTTGCACAGCAGgtttgctattatatagtcttgttttctgaacagcatttagactttcaagaaacaaattattgattttttctgttctgatgaattctgatcatggaattgaggctttcaagacatttatcattgtattgtgcacaagttgatagtttctattgatcgacacattgctttgataa
ataggagctgctaggtaggaaattatgcccgcttctctctcaattgccttatttttgtgttcatttatttctttttgcagTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCT
TCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGTATATATTTATTTTACTATGTTGCCCTTTTGCTAGGTTTTTTCATTGAGTACTTGCCCTTCTTATGCTAGATATTTATCATTTAGTGCTAGTTGTGGAG
TTTGGTACATGCTTATTGTGGATGAGACTTGTGGTTCAAAACACTATTCCACTGTGCATTACCTTAATTGTTTTGAAAATTGGGCGACTATGTAGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGA
GCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGC
ATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGA
CATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTT
CAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTT
TATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGG
GAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGG
CTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTT
ATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATT
CACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGACAGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAG
TTAGTGGAAATAGTTCCAATTTCTAAATGTAACGTAGAGGAATGGAATTTTGACGGAGC
Intron 2 GTATCGACTT ... ATCTTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.01 | 248 | 95 | 45 |
| A2 | 20.68 | 140 | 56 | 17 |
| A3 | 21.18 | 201 | 80 | 28 |
| A4 | 23.68 | 166 | 77 | 26 |
| A5 | 19.72 | 114 | 46 | 10 |
| A6 | 21.05 | 45 | 19 | 5 |
| A7 | 22.39 | 156 | 69 | 21 |
| A8 | 18.35 | 89 | 30 | 10 |
| A9 | 19.59 | 117 | 44 | 13 |
| A10 | 20.35 | 92 | 31 | 16 |
>TRINITY_DN109140_c0_g2_i4 from sample A2 / Example spliced isoformATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCC
AACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAG
GGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTC
GGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGAT
CTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAG
TAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAACGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAA
GCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGG
GTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAA
AGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACAC
ATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTG
GAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGAT
GGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGA
CACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCT
GCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGC
TAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATAC
GGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTT
TCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGC
TCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGT
TTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAA
AGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAAC
ATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGATTACTTGATGTTAATTTGACAGA
CTT
>TRINITY_DN109140_c0_g2_i2 from sample A2 / Example unspliced isoform:ATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCC
AACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGAT
CAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGC
ACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGG
ACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGAT
GTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAA
GAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAACGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGA
AACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCG
CGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGT
CAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATG
CTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGgtatcgacttccattcatttagtaacaaaatttccaaagcagattcgcattctttgctgctgatttgcctttttcatatagatagtttgttcttatagagatgactatctttctagGTGG
AAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAG
GAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTA
TTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTT
TGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCC
CCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAA
GGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTG
CATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGT
GTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAG
AGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCC
TCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTC
TGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGA
TTCTGTTATGTTAGGCTGAGATTACTTGATGTTAATTTGACAGACTT
Intron 3 GTATATATTT ... GACTATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.63 | 177 | 40.3 | 46 |
| A2 | 24.46 | 139 | 46 | 45 |
| A3 | 28.74 | 181 | 39.9 | 73 |
| A4 | 21.77 | 115 | 26.5 | 32 |
| A5 | 26.19 | 62 | 18.7 | 22 |
| A6 | 27.68 | 81 | 18.5 | 31 |
| A7 | 27.8 | 174 | 34.1 | 67 |
| A8 | 31.48 | 74 | 12.2 | 34 |
| A9 | 25.45 | 123 | 24 | 42 |
| A10 | 26.7 | 162 | 30.9 | 59 |
>TRINITY_DN109140_c0_g2_i4 from sample A2 / Example spliced isoformATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCC
AACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAG
GGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTC
GGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGAT
CTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAG
TAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAACGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAA
GCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGG
GTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAA
AGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACAC
ATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTG
GAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGAT
GGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGA
CACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCT
GCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGC
TAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATAC
GGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTT
TCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGC
TCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGT
TTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAA
AGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAAC
ATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGATTACTTGATGTTAATTTGACAGA
CTT
>TRINITY_DN109140_c0_g2_i7 from sample A2 / Example unspliced isoform:ATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCC
AACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGAT
CAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGC
ACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGG
ACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGAT
GTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAA
GAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAACGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGA
AACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCG
CGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGT
CAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATG
CTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACT
TCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCA
ATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGgtatatatttattttactatgttgcccttttgctaggttttttcattgagtacttgcccttcttatgctagatatttatcatttagtgctagttgtggagtttggtacatgcttattgtggat
gagacttgtggttcaaaacactattccactgtgcattaccttaattgttttgaaaattgggcgactatgtagGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACC
AATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGAT
CAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTA
ATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACAT
TCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGA
CAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGG
GCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAG
TTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTAC
ACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCA
TCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGATTACTTGATGTTAATTTGACAGACTT
Intron 4 GTCTTGGAAG ... TTTCCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.86 | 63 | 147 | 119 |
| A2 | 63.3 | 60 | 111 | 96 |
| A3 | 77.69 | 28 | 100 | 95 |
| A4 | 64.17 | 67 | 139 | 101 |
| A5 | 68.79 | 22 | 46 | 51 |
| A6 | 66.74 | 73 | 149 | 144 |
| A7 | 69.75 | 90 | 216 | 199 |
| A8 | 65.2 | 95 | 192 | 164 |
| A9 | 66.16 | 100 | 192 | 199 |
| A10 | 67.01 | 65 | 143 | 121 |
>TRINITY_DN109140_c0_g2_i11 from sample A2 / Example spliced isoformATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCC
AACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGAT
CAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGC
ACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGG
ACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGAT
GTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAA
GAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAACGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGA
AACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCG
CGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGT
CAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATG
CTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACT
TCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCA
ATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGG
TGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAG
AAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGA
ATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAG
CACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCG
ACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGG
CATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTT
GTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAAT
ATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAA
TTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGATTACTTGATGTTAATTTGACAGACTT
>TRINITY_DN109140_c0_g2_i4 from sample A2 / Example unspliced isoform:ATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCC
AACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAG
GGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTC
GGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGAT
CTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAG
TAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAACGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAA
GCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGG
GTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAA
AGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACAC
ATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTG
GAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGAT
GGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGA
CACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCT
GCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGC
TAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATAC
GGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTT
TCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAgtcttggaagtagaggaaaaggttctgacatgccctttcccccagGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGC
TCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGT
TTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAA
AGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAAC
ATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGATTACTTGATGTTAATTTGACAGA
CTT
Intron 5 GTTAGTGACA ... CATGTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.24 | 227 | 17.7 | 44 |
| A2 | 17.8 | 217 | 28.9 | 47 |
| A3 | 21 | 237 | 27.1 | 63 |
| A4 | 18.06 | 177 | 10.3 | 39 |
| A5 | 14.61 | 76 | 11.9 | 13 |
| A6 | 26.83 | 30 | 1.3 | 11 |
| A7 | 22.12 | 176 | 15.9 | 50 |
| A8 | 17.95 | 64 | 2.6 | 14 |
| A9 | 21.58 | 109 | 8.6 | 30 |
| A10 | 16.85 | 153 | 19.6 | 31 |
>TRINITY_DN119910_c0_g1_i4 from sample A1 / Example spliced isoformGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGT
GATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAG
TAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAG
AAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTT
CGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAAC
AAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAA
CACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAAT
TTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAG
GATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGG
AGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCA
GCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAA
TGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAA
TACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGG
TTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGA
AGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTC
GGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGT
CAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTG
AACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGAC
AGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGTAACGTAGAGGAATGGAATTTTGACGGAGTAAATTTACTAGAGATTATAATTATTGACTAGAGGAAACGTTAGATAGTGCAG
>TRINITY_DN119910_c0_g1_i8 from sample A1 / Example unspliced isoform:AGACGCCTTTTCTTTGAGTACAGgttagtgacatattacaacatgcatctataactgctacatttaaaaaatgggtttggatttggcctgagtaatgatgaatctatatcaaagaaaggcaattgatttgcatgcaaagatgggccttcaaggtttattactaagtttgcttgtctataattcagggccaaagtttgtgc
ttataggttgtaacaaaactagattgttcctgattactaaggttgctggtatggctacaagttaaggccaaagtttgtggttgtaggttgtaaacaaaaattcttgtatgcttttcagttcagacgctttaaccttttcctataacagaaaacattaggtgccaaatatctattatggatgcagaaaatgttctttgcag
tgtatcttaaatgcaacatagcacgtgtgttttcgtgcatcttgtgctattttatgttattcagtttcatgtttctgggaataacagttattgtcttgttattttgtttctttgacattcttcagcaagtggtagaaaactagatgtgagtcactttcttttgaaattttgcctctgatcagcgcaagaaaattgaagga
tattgtatcccgagtttgttataaacattcttagtgtgtgccatttgcatgtagcagTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTC
GCACATCATGTTTTCAGGTTAGTTTTTATTTTGTATAATTTATCATTTCTGATTATAGAAAACAAGTATGGCCTATTTGCTTGCATAAGAAATGACATGTAGAGATAGTTTGTACACCTCTCAATATGACCATTTTCAGTAGTTTTTTCTAACAGTTTTTCCAGAGTTGGGTCCATTAATTATGTTTCTATGAAATTTGG
GTAGCGGGTGCTCATTGTTTTCAATTGTATTTGGCTTCATTCCAATGATGCATTTACAATTAATCGGGTGCTCATTGTTTTCAATTGTATTTGGCTTCATTCCAATGATGCATTTACAATTAAT
Intron 6 GTAACCATGA ... TTGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.26 | 220 | 14 | 63 |
| A2 | 23.16 | 136 | 5 | 41 |
| A3 | 24.34 | 202 | 16 | 65 |
| A4 | 21.05 | 165 | 12 | 44 |
| A5 | 22.73 | 119 | 8 | 35 |
| A6 | 15.69 | 43 | 6 | 8 |
| A7 | 16.09 | 146 | 11 | 28 |
| A8 | 20.17 | 79.2 | 3 | 20 |
| A9 | 26.4 | 131 | 7 | 47 |
| A10 | 12.75 | 89 | 6 | 13 |
>TRINITY_DN119910_c0_g1_i4 from sample A1 / Example spliced isoformGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGT
GATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAG
TAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAG
AAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTT
CGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAAC
AAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAA
CACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAAT
TTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAG
GATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGG
AGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCA
GCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAA
TGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAA
TACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGG
TTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGA
AGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTC
GGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGT
CAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTG
AACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGAC
AGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGTAACGTAGAGGAATGGAATTTTGACGGAGTAAATTTACTAGAGATTATAATTATTGACTAGAGGAAACGTTAGATAGTGCAG
>TRINITY_DN119910_c0_g1_i5 from sample A1 / Example unspliced isoform:GTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGT
GATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAG
TAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAG
AAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTT
CGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAAC
AAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAA
CACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGgtaaccatgagggatatgatgattactattcttcatattgttactgatgcttcatatgttaatatttgtgtcacaaacaaacttgcttgcagGACCTCCGTCTTGTTCGTGACA
AATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATT
GAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTA
TTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTC
CAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAA
CGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGG
AGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTG
GGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAG
AAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAA
GGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGA
TAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGC
ATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTG
GTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGACAGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGTAACGTAGAGGAATGGAATTTT
GACGGAGTAAATTTACTAGAGATTATAATTATTGACTAGAGGAAACGTTAGATAGTGCAG
Intron 7 GTATGGCTTA ... ATCTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16 | 231 | 5 | 44 |
| A2 | 10.6 | 135 | 0 | 16 |
| A3 | 14.7 | 238 | 6 | 41 |
| A4 | 10.59 | 76 | 6 | 9 |
| A5 | 11.11 | 96 | 2 | 12 |
| A6 | 12.9 | 27 | 0 | 4 |
| A7 | 15.94 | 116 | 0 | 22 |
| A8 | 16.98 | 44 | 2 | 9 |
| A9 | 13.73 | 88 | 0 | 14 |
| A10 | 10.98 | 146 | 0 | 18 |
>TRINITY_DN119910_c0_g1_i4 from sample A1 / Example spliced isoformGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGT
GATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAG
TAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAG
AAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTT
CGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAAC
AAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAA
CACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAAT
TTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAG
GATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGG
AGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCA
GCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAA
TGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAA
TACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGG
TTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGA
AGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTC
GGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGT
CAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTG
AACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGAC
AGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGTAACGTAGAGGAATGGAATTTTGACGGAGTAAATTTACTAGAGATTATAATTATTGACTAGAGGAAACGTTAGATAGTGCAG
>TRINITY_DN119910_c0_g1_i2 from sample A1 / Example unspliced isoform:TCACCAAGAGCGGACACCAGTGGTATGTTGCTTTCTGGAGATGGTCAATTTGTTGTTTTTTATGAAAGCATTTCAAGTCTATTATTTGTTTTATTTTTAGTTAATGCATCTCAAGATTCTCTTGGAAGATTTTAATGTAATTCTGCACTTGTATTGCCCAACTATATTATTGCCTGCAGGCACCATCAGCCACACTAGTC
GTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGgtatggcttagctgtaaatataagtaaatttctatattttgaattgtaacaggttctagtttgtgcaatgtgtaaaaatttctccttttgattttacttagaccatatgcttcttcatcaaagatatgtttcttgtgctcacagctccg
tttgtatggatatcttgactacagtagttgccatgtttttaatatatattaaatgctgaaccagtgtgttgaatgtatctttgtagGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTG
GATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCG
TCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGG
ACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGC
AGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGT
CTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACC
GGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAAT
GTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGG
ATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGAT
CTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTA
TTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCA
AGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGA
CTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACAT
GGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTA
AGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGACAGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGT
AACGTAGAGGAATGGAATTTTGACGGAGTAAATTTACTAGAGATTATAATTATTGACTAGAGGAAACGTTAGATAGTGCAG
Intron 8 GTATGTTGCT ... TTGCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.45 | 311 | 50.8 | 17.3 |
| A2 | 16.72 | 187 | 39.5 | 15.8 |
| A3 | 13.47 | 306 | 50.3 | 18.5 |
| A4 | 14.12 | 125 | 21.8 | 8 |
| A5 | 12.72 | 115 | 17.5 | 11.8 |
| A6 | 14.42 | 42 | 7.5 | 2.5 |
| A7 | 12.43 | 141 | 21 | 8.5 |
| A8 | 18.14 | 47 | 11.3 | 1.5 |
| A9 | 10.43 | 99 | 12 | 4.3 |
| A10 | 8.38 | 175 | 16.5 | 7.8 |
>TRINITY_DN119910_c0_g1_i4 from sample A1 / Example spliced isoformGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGT
GATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAG
TAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAG
AAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTT
CGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAAC
AAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAA
CACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAAT
TTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAG
GATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGG
AGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCA
GCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAA
TGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAA
TACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGG
TTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGA
AGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTC
GGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGT
CAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTG
AACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGAC
AGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGTAACGTAGAGGAATGGAATTTTGACGGAGTAAATTTACTAGAGATTATAATTATTGACTAGAGGAAACGTTAGATAGTGCAG
>TRINITY_DN119910_c0_g1_i2 from sample A1 / Example unspliced isoform:TCACCAAGAGCGGACACCAGTGgtatgttgctttctggagatggtcaatttgttgttttttatgaaagcatttcaagtctattatttgttttatttttagttaatgcatctcaagattctcttggaagattttaatgtaattctgcacttgtattgcccaactatattattgcctgcagGCACCATCAGCCACACTAGTC
GTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGTATGGCTTAGCTGTAAATATAAGTAAATTTCTATATTTTGAATTGTAACAGGTTCTAGTTTGTGCAATGTGTAAAAATTTCTCCTTTTGATTTTACTTAGACCATATGCTTCTTCATCAAAGATATGTTTCTTGTGCTCACAGCTCCG
TTTGTATGGATATCTTGACTACAGTAGTTGCCATGTTTTTAATATATATTAAATGCTGAACCAGTGTGTTGAATGTATCTTTGTAGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTG
GATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCG
TCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGG
ACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGC
AGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGT
CTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACC
GGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAAT
GTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGG
ATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGAT
CTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTA
TTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCA
AGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGA
CTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACAT
GGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTA
AGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGACAGACTTGTTATTAATACAGCGAATTTAGACTGCATCTTATGTAGGCTACCTGATTAGTTAGTGGAAATAGTTCCAATTTCTAAATGT
AACGTAGAGGAATGGAATTTTGACGGAGTAAATTTACTAGAGATTATAATTATTGACTAGAGGAAACGTTAGATAGTGCAG
Intron 9 GTATGACCCA ... GGATGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.62 | 104.6 | 54 | 27.6 |
| A2 | 35.77 | 64.5 | 35 | 16.5 |
| A3 | 25.18 | 106.8 | 35 | 28.6 |
| A4 | 31.6 | 53.3 | 24 | 17.2 |
| A5 | 38.48 | 35.6 | 22 | 7.1 |
| A6 | 18.23 | 4.7 | 1 | 0.4 |
| A7 | 18.46 | 49.3 | 10 | 10.7 |
| A8 | 44.7 | 8.7 | 7 | 2.4 |
| A9 | 34.24 | 29.5 | 15 | 8.3 |
| A10 | 27.31 | 45.7 | 16 | 12.4 |
>TRINITY_DN109140_c0_g2_i9 from sample A2 / Example spliced isoformATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAAGCCC
AACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGAT
CAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGC
ACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGG
ACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGATGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGAT
GTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAA
GAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAACGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGA
AACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCG
CGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGGTTAGTGACATATTACAACATGCATCTATAACTGCTACATTTAAAAAATGGGTTTGGATTTGGCCTGAGTAATGATGAATCTATATCAAAGAAAGGCAATTGATTTGCATGCAAAGATGGGCCTTCAAG
GTTTATTACTAAGTTTGCTTGTCTATAATTCAGGGCCAAAGTTTGTGCTTATAGGTTGTAACAAAACTAGATTGTTCCTGATTACTAAGGTTGCTGGTATGGCTACAAGTTAAGGCCAAAGTTTGTGGTTGTAGGTTGTAAACAAAAATTCTTGTATGCTTTTCAGTTCAGACGCTTTAACCTTTTCCTATAACAGAAAA
CATTAGGTGCCAAATATCTATTATGGATGCAGAAAATGTTCTTTGCAGTGTATCTTAAATGCAACATAGCACGTGTGTTTTCGTGCATCTTGTGCTATTTTATGTTATTCAGTTTCATGTTTCTGGGAATAACAGTTATTGTCTTGTTATTTTGTTTCTTTGACATTCTTCAGCAAGTGGTAGAAAACTAGATGTGAGTC
ACTTTCTTTTGAAATTTTGCCTCTGATCAGCGCAAGAAAATTGAAGGATATTGTATCCCGAGTTTGTTATAAACATTCTTAGTGTGTGCCATTTGCATGTAGCAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTG
CAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGAT
GAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAA
GAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAG
CTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGAT
GCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCT
GGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTC
CAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGA
ACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGC
AGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTG
ATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATA
CAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGC
CCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAA
AATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGATTACTTGATGTTAATTTGACAGACTT
>TRINITY_DN109140_c0_g2_i5 from sample A2 / Example unspliced isoform:CTTTTTTTAAAATTTATTATAAAAATATTTTTATATATTTTTGTACATGCCATTTCCCTGCTGGATCCGGATCCTGGCTTTTAAAAAGTCTGGCAAATCTGTATCTGGATCTGGATCCGAATCCGAGTCCATATCTGTATCCTGGTAATATAGCATTATATAGTTGAAGAAGATGTCTAATATAATGGAAACTTTAAATA
CATATCCTAACCTAGTACAATATAGTATCATTTTAAGTAAGAGACAGATGGGATTGTCTTTGTAGGCCCAAAATTCTACAGCTAATGCCTTTAGCAATTAGACTGGAGGGTTCAAGCTATTCATGTATTGTCTATGACTCTATGGTGTCCAGGCTTCCTGTAATTTAACCCCGGTGTCACTAGGTTGCAATAGGTGAGTT
TATACAAAGATGTAATTAGATAGGTTCTGTTTTGAAGCCAGATGGGATTGCCCTAGAGGCCCAACATCCCAGGTTGTGGGACATGGGATGGCAAAAAAATAAGGTTTATCTTCTGCTATTTTGGATATATTGAGGCTTACATCCCCTGGAGTCCTGCACAGTGAAAATTAACTATAATATGTAGCCAATTGAAAATTGAA
AATACATATTCAATTTTCAAATCTAGTATAGTATGGTATTTTTTTAAAGATGCGACATACTGGATTGTCTTTGTAGGCCCAAAATTCTACAGCTAATTAATGTATTAGAGAGCTGTAATAATCTGATTTCCTTAACAATTACACTGGGGGGCTCAAGCTCGAGCTATCTGTATCTTGTCTTTGCTGTTCAGGCTTCCTGT
AATTTAAGCCCAGTTTGACTAAGTTGCGGTAACTGTATTGATACAAAGATAAAATTAGATTTGTCCTGTTTTGAAGCTAGATGAGATTGCCCTCTCAGGTCAAACATTCTGCGGCCAAGTTAAAAGTTAAAGTTGAGTGTTAATAATTTGTAATATTCCTAATGCTGCAAAGTCAAAGGTAAATATGTAGACAACTGATG
GCACAGAGCATTAGAAGAAGACATGCATCTAATTATATTCCTTGGTTAGTTATTAGCTATATGAATACTGGAGTATATTGTCATACTTATTCATCTCCATAAGAAATCCTCTTACATGGTTTCACTATAGGCATGGGTAAGGTCCGTAAGACTACCACATAAGGCCTCAATCAAGATCATGATGACTCAAAATCGAAAAT
TGTAAGTCACCCACTCAATGTACTTGTGGAAAGAGTAATTCTTTAAGATAACATTTTACAGTTCTGAATTCCTCTTACTTATTGCATCTTGTATTTTGGTTACTGTTACTTATTTTTTGTAATTTGGATTCTGATATTGTCTTGCTGTGGAAATGACTATTTTGAAGTTCATTTTACAGCTTACAGAAGATGGAGCAATT
TTGCTGGCAATCATTATGTTCTTTATTTCTTTTATAACAATGACAGTAACTTAAGAGCTCGTATGCTTACGTGCCATGAATATGATCTTTGCATATATCATACAATTCATGAGAAAATGGAGAGATTAGGATTTTTTTGTTTCTAAGCTACTTTCAAAACTTCCTATTACCAACTTTTCAGCAGGCTTGAACCCTGACAT
GAATGTGTGTTAACCTTGACATGATTGTATAGCATTTAGGCTTAAGCATCTTGCTAGTTTAAGGAATGTATCATATAAAACCTAAGTCAGTACTTGTATTTGAGAATTAATAGAATGATTGAAGGAGGGTGAAGTTGAGGGAAGAATTCTATCTTTGAGGATCCAATAAAGGATGACCCAGTCAGACTACATTCTTGATT
GACATTGGTGTAACAGTATCTGTTTGTGCATCCATTACAGGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGATCAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTgtatgacccacacgatcaatatggttttctcc
ttagtctcctatggggctgatttccatgataattgggtcatgtgattctcctccatatttacatccatcctcataacagcaagcaaggaagcccacccccattgaggataatggatttctctgctgagagctcactcataacaatattagttgctgacttcccttattctgttggatgaacagGCTTTGGAGGGCTACAG
TGGAGTCCGTGAGCCCGAGTTCAGGTGAGTGGCTTAGCATTTGTTATAAATTGTTGTTGCAAGTAATGAGAATGGCTTCTTGAGACACTGGAATAAGGAGGATGTGAATATTTAAGGTTCTATTTATAGATTTTTGCATACTGTATAGTTTTGGAATGCTGTTTCTTATACTATCTCATTCATAACTTGAAACACTGTTC
TCTATCCTTAATGCCCCGAGGGTGAGTTAAAAAGCAAAAGCCAGCGGCAA
Intron 10 GTGAGTGGCT ... GTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.97 | 87.7 | 18.5 | 35 |
| A2 | 30.97 | 58.7 | 15 | 26 |
| A3 | 27.54 | 86 | 23 | 31 |
| A4 | 30.3 | 58.7 | 10 | 25 |
| A5 | 33.4 | 32.3 | 5.5 | 16 |
| A6 | 33.97 | 4 | 0 | 2 |
| A7 | 28.28 | 55 | 6 | 21 |
| A8 | 43.27 | 8 | 1.5 | 6 |
| A9 | 34.31 | 29.3 | 5 | 15 |
| A10 | 22.82 | 44.7 | 4 | 13 |
>TRINITY_DN43153_c0_g3_i10 from sample A9 / Example spliced isoformGTCTATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAA
GCCCAACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGT
TCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTG
CGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGACGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCG
TGATCTTGATAGTTTTCGAGATTATGGGTTTGACAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGA
GTAGTAACTGGCGTAGGAGGGACAGAGAGAGAGAGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAA
GAAAGCCACAAGGTAGAAAACCACGAGGATACACGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGT
TCGGGTTATAAAGGAGAGGAACTCAGGCATATCTCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAA
CAAAAGGTTCGACTCAAGGAAATGCCAAAGGTGTGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCA
ACACATGTCTTAGTTGTTCGTGGGTTAGATGAGAATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAA
TTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGCATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAA
GGATGGGCACAAACGTTGAAAGTTATGATGCAGGAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAG
GAGACACAGCAGTATGTGCCTTATGTAGATAAAGCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGC
AGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGAAATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATA
ATGCTAATAATGGAAATATGTCTGGTAAAAGTGTAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACA
ATACGGGGTGTGATTAGAGAATCAACTAGAGGAGTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAG
GTTTTCTGAAACTCCTCAATCAGGTTATAGAGATAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTG
AAGCTCACAGTTATGAGGTCATCACCCCTGACAAAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCT
CGGTTTGAGACTCATTCTGGAGACAGTTATCGAGTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATG
TCAAAGCACCAATGTGTCTATTCTCGAAGATGTTCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTT
GAACATGGACACTGTCATGCGACCACGATTTGAGAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGA
CAGACTTGTTATTAATACAGCGAATTTAGACTGCAAAA
>TRINITY_DN43153_c0_g3_i6 from sample A9 / Example unspliced isoform:GTCTATATCTAAGGTACATCTCGCTTCCTGTGTTCTTTTTCTATCTGTGCAGATCTTGTGACACAAAACTCGGCCGCGAGTCTTCTCCGTTATCGCAGCCAAAGCCTTTAATCCCTACCATTTCTGACTTGGTTTCTTCTTGGCTATTTACAGGCCTTGAAAACAACCATTTCCTGTCTCAGAAAGCCGTTCTCTTAAAA
GCCCAACTGCCTCCTATACTGCTATTTACCCCCAAAACTGTCTCGATAACTATTATTATTATTTCTTCCTGTAAGCTTATTTTTCCGGCGGTTTCCCTGGGCGTTTCAGGCGCTTTCATCACCGGAGAAAGCAAAGGAGCCGAGGTCGAATCTCCCGTAGATCGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGA
AGATCAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGgtgagtggcttagcatttgttataaattgttgttgcaagtaatgagaatggcttcttgagacactgga
ataaggaggatgtgaatatttaaggttctatttatagatttttgcatactgtatagttttggaatgctgtttcttatactatctcattcataacttgaaacactgttctctatccttaatgccccgagggtgagttaaaaagcaaaagccagcggcaaagattccattacaatatgctgttggaatttcatgcatcaatt
agctttgatgagtgtttttagttgtaccaatattaaagttacctctatgctttatgcaacatggtttatttttttggattattttgtcagatgaatgaagagatctgttttgcagctttgcaatgttctgggtcagtgggattgcatcatgttgtattcatgttattgcagGGTTGGTGGGTCATATGGAGGGAGAAGGT
ATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAGCTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGC
TTTCGTGACGTAGACAACTTTCGGGACGTAGACAACTTTCGGGACGTAGACACCTTTCGTGATGTAGACAACTTTCGTGACCGAGACAACTTTAGGGACATAGACAAGTATCGTGACGTAGACAGCTTTCGTGATGTTGAAAAATTTCGAGGAGCTGACAGTTATCGTGATCTTGATAGTTTTCGAGATTATGGGTTTGA
CAGGGCTGCACGGTTTAGTGGACGTGACCGTGAAAATTTTGATGTAGATGAATATGATTATAGGCATCGCCTGTTACAAACAAATAGAGAAGAAAGTCGCGAAAGAGATTTTGAATACTCTAGGCATGTTGATTGTGATTCTGATCATGATAGGGGCAGGAGAGAGAGTAGTAACTGGCGTAGGAGGGACAGAGAGAGAG
AGAAGAAAGCCCCAAGCAGGGATAGGATCCAAACTCCTGAGAAGAGGCAGCATGATCGATCTCGATCCCGTGGTCATGATGAGCGCCAAAGGTCACGCTCACCTCGGGGGCGCAGCCATGGAAGAAGCCACAAGGAAGAAAGCCATAGAGAAGAAAGCCGCAAGGAAGAAAGCCACAAGGTAGAAAACCACGAGGATACA
CGTCATGAAACCAAAACAGAAAAACGCAAGGACCGTGAGGAGAAACGTCACCAAGAGCGGACACCAGTGGCACCATCAGCCACACTAGTCGTTAAAGGCTTATCTCAAAAGACTACCGAGGATGATCTATATCAGGCTCTGGCACAGTGGGGTCCTCTACGTCATGTTCGGGTTATAAAGGAGAGGAACTCAGGCATATC
TCGGGGATTTGCCTTTATTGATTTCCCTTCTATTGAAGCAGCGCGTAACATGTTGGATGGTATTGGAGATGATGGCTTAGTTGTTGATGGAAGACGCCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGAGGTTTAGGAGCACCACAAACAGGACATGAAAGCACAACAAAAGGTTCGACTCAAGGAAATGCCAAAGGTG
TGGCTACTGCAGCTGACTGGATGTGCACTGTCTGTGGCTGTGTCAACTTTGCTCGTCGCACATCATGTTTTCAGTGCAATGAAGGGCGAACCGAAGATGCTCCTGCAGCTGATGTAGCTGCTTCTAATCCAGCTCCAAGTGGAAAAAAAGCATCAGAAGCTGGACCAACACATGTCTTAGTTGTTCGTGGGTTAGATGAG
AATGCTGATGAAGAAATGCTACATTATGAATTTTCCAAGCATGCTCCTATAAAGGACCTCCGTCTTGTTCGTGACAAATTTACTCATGTGTCAAGAGGCTTCGCATTTGTACATTTTCATTCGGTGGAAGAAGCAACAAAGGCATTGGAGGCAACTAATGGACAAAATTTGGAGAAGAATGGTCAGGTCTTGAGGGTTGC
ATATGCAAAGAGTATTCATGGTCCTGGTTCTTCTACTGGTACTTCTCAGTCCAGCAGCCTTGCTGCTGCTGCAATTGAAGCTGCAACCTTTGCACAGCAGTATGACTCTGTTGGATGGGCACCTAAGGAGTACAATCCGGATGAAAAACAACTTGCTGAAGCTAAAAGGATGGGCACAAACGTTGAAAGTTATGATGCAG
GAAAATCAGCTATTGAACCTTCTGAAGGAGGCACAGTTCCTCAATCTGGGTTTGTCTGGGATGAAGCATCTGGTTATTATTATGATGCAGCTTCTGGGTTTTACTATGATGGTCATACTGGGCTCTATTATGATGGTAACAATGGTACCTGGTATTCCTATGATGAGGAGACACAGCAGTATGTGCCTTATGTAGATAAA
GCAAGTGATGCAAACAAAGTATCGAGCAAGTCTACAGAGGGGGTGACCAATCACCGGAAAGTAGTCATTTCAGCTCCAGCTGCAACGATCACTGTTAATAATGAAGCTTCAGATAAAAAAACTTCTTTGCCAGATGCTGTCCAGGCTGCTGCAGCCGCTGCACAAGCAGCTGCAAAAAAAGAGAAGGAAAAATTAAAAGA
AATTAAGCTGGCCTCTAAAGGCAGCATATTGGCTAGTAAGAAGAAGATCAGCAATGTCTTGACGATGTGGAAGCAACGCAATCATCAAGGGCAGGCTGCTCGGATTGTTCTAGATGATGATTCCTCCCCAGCGACATTGCCTACCTCTTCAGATGAAAAGCATAATAATGCTAATAATGGAAATATGTCTGGTAAAAGTG
TAAGTGCTCCAAAATTTAAGCCTGACATGGTAAATGCCAAAGAATCTAATCAGGGATTGTCATCTCTAGGACGTGGAGCAGGAAATCCATTTGGTGGTAATTATACTCCATCTGATAGTGCAGTAAAGGTAAAGCCTGTGCCTGTCAGTAATAGTGCTGGAGGTACAATACGGGGTGTGATTAGAGAATCAACTAGAGGA
GTGGTGAGAACAGATTCAAGCTTTTCAGCATCTACTGGAGCAGCACATTCGGGATCTTCAATGGCTGGACAAGGTGGGGTTCCTGAGGCTAGTACAGGTTCAACTCCATTCAAGACAGATGCATCTGCATTGGGCTCTTATGGACCAATGGCTGGAACGAAACGAAGGTTTTCTGAAACTCCTCAATCAGGTTATAGAGA
TAGAGCAGCAGAAAGGCGTAGTCTTTATGGATCATCATCTGCGACAGACAGTCTATTAGACATTGAGCTTGCAGAGAAAAGTCTTGGAAGTAGAGGAAAAGGTTCTGACATGCCCTTTCCCCCAGGTGTTGGTGGAGTGAAGTCTGGGTCAGTGCTGCCAGGAGGTGAAGCTCACAGTTATGAGGTCATCACCCCTGACA
AAGCTATTGATGGAAGTAATGTTGGGAATCGCATGTTGAGAAACATGGGCTGGCAAGAAGGCTCGGGACTTGGCAAGGATGGCACTGGCATTGTAGAGCCTGTGCAAGCTCAAGTTACAGAAGATAGAGCTGGTCTTGGTAGTCAGGCGCAGCGGAAGGTTGATCCTCGGTTTGAGACTCATTCTGGAGACAGTTATCGA
GTTGTTATACAGAAGAAAGCTCTGGCTAGATTTCACGAAATGGCCTAGTTGTAGACTGGTCAATGACAGTCTCAGATAATCTTTGCTTGTGGCAACTGATAATGTTCGCCGCCAATTCGTTTTATCCTCAACAGGAAATTCCTTTGGGGACATGTGCTTTTCAGATGTCAAAGCACCAATGTGTCTATTCTCGAAGATGT
TCTGTGTGCCCAAGTGGGTTATCTTATATTGTCCCAGCTAATTTCTACACTACATGGATGATGGAATCCAGTGGGCATTTCTGTCAATATGTTGTACAAATTATATATTTTATATTTCCCAACATTCTGTTTCTTGCTTCGCAGTCATAAACTGTCGGAGATGAGTTGAACATGGACACTGTCATGCGACCACGATTTGA
GAAATTGAAAATTCTGAGATTGATTCACTTCCATTATCTTGTAATTCATCAATTAAGATTCAGGAAATGTGGCTTGGTGAGGATGAAATTGCGCTAGGTATCGATGCATTTCAAAATTCACATTTGATTCTGTTATGTTAGGCTGAGTTTACTTGATGTTAATTTGACAGACTTGTTATTAATACAGCGAATTTAGACTG
CAAAA
Intron 11 GTTTTCTCCT ... GGATGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.86 | 81 | 33 | 15 |
| A2 | 18.11 | 52 | 15 | 8 |
| A3 | 14.93 | 94 | 17 | 16 |
| A4 | 21.67 | 47 | 19 | 7 |
| A5 | 23.33 | 23 | 11 | 3 |
| A6 | 16.67 | 5 | 2 | 0 |
| A7 | 7.69 | 48 | 5 | 3 |
| A8 | 40 | 6 | 6 | 2 |
| A9 | 23.81 | 24 | 10 | 5 |
| A10 | 12.87 | 44 | 12 | 1 |
>TRINITY_DN101964_c0_g2_i7 from sample A5 / Example spliced isoformGTCAGACTACATTCTTGATTGACATTGGTGTAACAGTATCTGTTTGTGCATCCATTACAGGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGATCAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGTATGACCCACA
CGATCAATATGGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGGTTGGTGGGTCATATGGAGGGAGAAGGTATTTGGATGAAGGCTTCTCACGGGAGCCTGTCTTTCCAAGAGCACCATTTCATCGGGAGCTGTTAGAGAGAGACAACTTTCCACCAGGCCCCCCTCCTGTTCTTGGTCTTTGGCCTCAG
CTGAGAAGAAGGAGTTTAGAAGATGAGATTGCCCTTCTAAGAGAAGTGCGTCGGCATGAAAAGGTTCCATATCTTGACAGCTTTCGTGACGTAGACAACTTTCGGGACGT
>TRINITY_DN101964_c0_g2_i6 from sample A5 / Example unspliced isoform:GTCAGACTACATTCTTGATTGACATTGGTGTAACAGTATCTGTTTGTGCATCCATTACAGGATAGGATTGAGACAGCCTGCATCTGAAGTTTCCTGAAGATCAAGAACCTTAACAGGGGTTTCGGAAGATATTTCAAGTAATGGATCCTGGGCGCTATGTTCTTCAGCAAGGATGGGATACTAACAGTGTATGACCCACA
CGATCAATATGgttttctccttagtctcctatggggctgatttccatgataattgggtcatgtgattctcctccatatttacatccatcctcataacagcaagcaaggaagcccacccccattgaggataatggatttctctgctgagagctcactcataacaatattagttgctgacttcccttattctgttggatgaa
cagGCTTTGGAGGGCTACAGTGGAGTCCGTGAGCCCGAGTTCAGGTGAGTGGCTTAGCATTTGTTATAAATTGTTGTTGCAAGTAATGAGAATGGCTTCTTGAGACACTGGAATAAGGAGGATGTGAATATTTAAGGTTCTATTTATAGATTTTTGCATACTGTATAGTTTTGGAATGCTGTTTCTTATACTATCTCATT
CATAACTTGAAACACTGTTCTCTATCCTTAATGCCCCGAGGGTGAG