sp|Q0WVU0|PP278_ARATH ----> Pentatricopeptide repeat-containing protein At3g51320
Intron 1 GTTTGTACGG ... TGACTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.67 | 7 | 4 | 6 |
| A2 | 48.15 | 7 | 5 | 8 |
| A3 | 46.67 | 4 | 4 | 3 |
| A4 | 100 | 0 | 0 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 44 | 7 | 1 | 10 |
| A8 | 42.86 | 6 | 3 | 6 |
| A9 | 57.89 | 4 | 6 | 5 |
| A10 | 35.48 | 10 | 2 | 9 |
>TRINITY_DN43890_c1_g3_i5 from sample A9 / Example spliced isoformCTCAACAATTAAGAAATTGGTGCCCAGAAGACAGATAAATTTTCTCAATCAGAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGGTAAATCTAGCCCTAAGCTATTATGTCATTTAATTTAGGTAGTAAATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTT
TAATATCAATTCACAAAACGCTTGGACTCGCTGGCGGAGGCAGTGTTAGGCAAGGAAATATAAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCCCGTCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGCTATGATCGGCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAA
ATAATATTGGATTTATGTAATTCGTAGGGAAGGGCATATAATGTTTTCCAACTGTTTGACAAAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATATTTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGGAGATTTTGGATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCA
ACAAAGGCTGTATCGGAATGTATCATTGAATATTTTCATAACTCAAAAATCAACGGACAATGTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGATCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCAGCACCATTGGCCATGGATGGAGGGAGTGCAGATTTGGGCAGTATAGCATAGGA
AACGGGCGGCCAGCAATACAGAATGTTCACCTTTTTGTCGAATCACTTCACCTTTTCTACTGTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCATGTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCATGTCGTTGTGCCTACTTCCAACCTGGATATGTATACACAATATGGGAGTATAA
ATATTGCACTCGAACTATTTGGCCAGATGTTTGAATGGGATGCCATATCCTGGTAGTTATGCTTGCTGGGTGTTCGTTGAACGGGTTTATAGATGAATCCTTGAAGCTCTCAAGGAAAAATTCCTGAGAAACACATGGTCTCATGGAATGTAACGATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCT
GCTGTAGGTATAGCCTCATGGAATACGATGACTACTGGATTTACAGAGGTCGAGATTTTTGACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCGTAATGTATTCTCATAAAATGAATTGTGCCTAGTTTTTCCGTGCAAAGAGGACAAATATTTTCCAACAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCAT
CTCTATGTTCTTGCTTTTTTTAGTTCCTGACGGGCATGTTTCTGCGAAGATTTTTCTTCTTTGAATTCATGACTGAAAACAAGGGAGTTCTCTTGTACCTGGTTTCTTCATTCACTGAGTCAACAAGATGTGAAGGAAGCAGTGAACTTTTTATGATGCATTGTGAACTGTTATTTGATAAACATGGAACAATGACATGG
GTTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGGAGCTTTGAATATCAACAACAGAGTATTTTTCTAAGTTCATATTGGATTTGATCATTATGCTTTGATTCATATGCATCAACTCCATAGGAAAACTTCCAGATTATATACAATTATT
GTGGCAGATCTTCACTGATGTTCAGATTACAGAGAATCTTTCCTTTAAAATCTAGAGAAGGGATTCTGCAATAAACTATTGGGAAAGTTCTCTTCCAATAGAAAAACATTCTTAATTAACCTTTCCCAAGAAACTAGAGGTATTAACAATCCTCTGGTAATGATTTATTTATTGTGGCAGATCTTCACTGATATTCAGA
>TRINITY_DN43890_c1_g3_i9 from sample A9 / Example unspliced isoform:CTCAACAATTAAGAAATTGGTGCCCAGAAGACAGATAAATTTTCTCAATCAGAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGGTAAATCTAGCCCTAAGCTATTATGTCATTTAATTTAGgtttgtacgggagacattatacgtaatataatcccagatttgtgctcataac
tcagatttgtgctcataactctcattatttatttgactaacagGTAGTAAATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTTTAATATCAATTCACAAAACGCTTGGACTCGCTGGCGGAGGCAGTGTTAGGCAAGGAAATATAAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCC
CGTCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGCTATGATCGGCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAAATAATATTGGATTTATGTAATTCGTAGGGAAGGGCATATAATGTTTTCCAACTGTTTGACAAAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATAT
TTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGGAGATTTTGGATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCAACAAAGGCTGTATCGGAATGTATCATTGAATATTTTCATAACTCAAAAATCAACGGACAATGTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGA
TCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCAGCACCATTGGCCATGGATGGAGGGAGTGCAGATTTGGGCAGTATAGCATAGGAAACGGGCGGCCAGCAATACAGAATGTTCACCTTTTTGTCGAATCACTTCACCTTTTCTACTGTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCAT
GTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCATGTCGTTGTGCCTACTTCCAACCTGGATATGTATACACAATATGGGAGTATAAATATTGCACTCGAACTATTTGGCCAGATGTTTGAATGGGATGCCATATCCTGGTAGTTATGCTTGCTGGGTGTTCGTTGAACGGGTTTATAGATGAATCCTTGAA
GCTCTCAAGGAAAAATTCCTGAGAAACACATGGTCTCATGGAATGTAACGATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCTGCTGTAGGTATAGCCTCATGGAATACGATGACTACTGGATTTACAGAGGTCGAGATTTTTGACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCGTAATGT
ATTCTCATAAAATGAATTGTGCCTAGTTTTTCCGTGCAAAGAGGACAAATATTTTCCAACAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCATCTCTATGTTCTTGCTTTTTTTAGTTCCTGACGGGCATGTTTCTGCGAAGATTTTTCTTCTTTGAATTCATGACTGAAAACAAGGGAGTTCTCTTGTACCTGGTTT
CTTCATTCACTGAGTCAACAAGATGTGAAGGAAGCAGTGAACTTTTTATGATGCATTGTGAACTGTTATTTGATAAACATGGAACAATGACATGGGTTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGGAGCTTTGAATATCAACAACA
GAGTATTTTTCTAAGTTCATATTGGATTTGATCATTATGCTTTGATTCATATGCATCAACTCCATAGGAAAACTTCCAGATTATATACAATTATTGTGGCAGATCTTCACTGATGTTCAGATTACAGAGAATCTTTCCTTTAAAATCTAGAGAAGGGATTCTGCAATAAACTATTGGGAAAGTTCTCTTCCAATAGAAAA
ACATTCTTAATTAACCTTTCCCAAGAAACTAGAGGTATTAACAATCCTCTGGTAATGATTTATTTATTGTGGCAGATCTTCACTGATATTCAGA
Intron 2 GTAAATCTAG ... TGACTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.11 | 17.8 | 4.8 | 6 |
| A2 | 46.15 | 7 | 4 | 8 |
| A3 | 36.84 | 6 | 4 | 3 |
| A4 | 20.91 | 2.3 | 0.3 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 9 | 0 | 0 |
| A7 | 28.21 | 14 | 1 | 10 |
| A8 | 33.33 | 9 | 3 | 6 |
| A9 | 29.73 | 13 | 6 | 5 |
| A10 | 33.33 | 11 | 2 | 9 |
>TRINITY_DN112878_c1_g3_i3 from sample A3 / Example spliced isoformAATAAAACAATTGGTAAACCAATATTTAAAAATTAAATAAATAATAAAATAAGTCAAACAGCTTAAAACAGAACATAAAATCTATTCAACCACTAAAAAGATTGGTGCTCAGAAGACAGATAAATTTTCTCAATCAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGGTAGTAA
ATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTTTAATATCAATTCACAAAACGCTTGGACTCGCTGGCGGAGGCAGTGTTAGGCAAGGAAATATAAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCCCATCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGCTATGATCG
GCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAAATAATATTGGATTTATGTAATTCGTAGGGAAGGGCATATAATGTTTTCCAACTGTTTGACAAAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATATTTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGGAGATTTTG
GATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCAACAAAGGCTGTATCGGAATGTATCATTGAATATTTTCATAACTCAAAAATCAACGGACAATGTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGATCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCAGCACCATT
GGTCATGGATGGAGGGAGTGCGGATTTGGGCAGTATAGCATAGGAAACGGGCGGCCAGCAATACAGAATGTTCACCTTTTTGTCGAATCACTTCACCTTTTCTACTGTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCATGTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCATGTCGTTG
TGCCTACTTCCAACCTGGATATGTATACACAATATGGGAGTATAAATATTGCACTCGAACTATTTGGCCAGATGTTTGAATGGGATGCCATATCCTGGTAGTTATGCTTGCTGGGTGTTCGTTGAACGGGTTTATAGATGAATCCTTGAAGCTCTCAAGGAAAAAATCCTGAGAAACACATGGTCTCATGGAATGTAACG
ATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCTGCTGTAGGTATAGCCTCATGGAATACGATGACTACTGGATTTAGAGAGGTCGAGATTTTTGACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCGTAATGTATTCTCATAAAATGAATTGTGCCTAGTTTTTCCGTGCAAAGAGGACAAAT
ATTTTCCAACAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCATCTCTATGTTCTTGCTTTTTTTAGATTGGACAAGGCACATATAGCAATGTTTACAAAGCC
>TRINITY_DN112878_c1_g3_i2 from sample A3 / Example unspliced isoform:AATAAAACAATTGGTAAACCAATATTTAAAAATTAAATAAATAATAAAATAAGTCAAACAGCTTAAAACAGAACATAAAATCTATTCAACCACTAAAAAGATTGGTGCTCAGAAGACAGATAAATTTTCTCAATCAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGgtaaatc
tagccctaagctattatgtcatttaatttaggtttgtacgggagacattatacgtaatataatcccagatttgtgctcataactcagatttgtgctcataactctcattatttatttgactaacagGTAGTAAATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTTTAATATCAATTCACAAAACGCT
TGGACTCGCTGGCGGAGGCAGTGTTAGGCAAGGAAATATAAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCCCATCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGCTATGATCGGCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAAATAATATTGGATTTATGTAATT
CGTAGGGAAGGGCATATAATGTTTTCCAACTGTTTGACAAAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATATTTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGGAGATTTTGGATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCAACAAAGGCTGTATCGGAATGTA
TCATTGAATATTTTCATAACTCAAAAATCAACGGACAATGTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGATCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCAGCACCATTGGTCATGGATGGAGGGAGTGCGGATTTGGGCAGTATAGCATAGGAAACGGGCGGCCAGCAATACAGA
ATGTTCACCTTTTTGTCGAATCACTTCACCTTTTCTACTGTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCATGTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCATGTCGTTGTGCCTACTTCCAACCTGGATATGTATACACAATATGGGAGTATAAATATTGCACTCGAACTATTTGG
CCAGATGTTTGAATGGGATGCCATATCCTGGTAGTTATGCTTGCTGGGTGTTCGTTGAACGGGTTTATAGATGAATCCTTGAAGCTCTCAAGGAAAAAATCCTGAGAAACACATGGTCTCATGGAATGTAACGATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCTGCTGTAGGTATAGCCTCATGGA
ATACGATGACTACTGGATTTAGAGAGGTCGAGATTTTTGACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCGTAATGTATTCTCATAAAATGAATTGTGCCTAGTTTTTCCGTGCAAAGAGGACAAATATTTTCCAACAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCATCTCTATGTTCTTGCTTTTTTTA
GATTGGACAAGGCACATATAGCAATGTTTACAAAGCC
Intron 3 GTAAATCTAG ... TGACTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.44 | 17 | 4 | 7 |
| A2 | 46.15 | 7 | 4 | 8 |
| A3 | 34.5 | 6 | 3.3 | 3 |
| A4 | 20 | 2 | 0 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 9 | 0 | 0 |
| A7 | 28.21 | 14 | 1 | 10 |
| A8 | 35.11 | 8.3 | 3 | 6 |
| A9 | 29.73 | 13 | 6 | 5 |
| A10 | 33.33 | 11 | 2 | 9 |
>TRINITY_DN46802_c0_g1_i7 from sample A7 / Example spliced isoformCCAGAAGACAGATAAATTTTCTCAATCAGAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGGTAGTAAATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTTTAATATCAATTCACAAAACGCTTGGACTCGCTGGCGGAGGCAGTGTTAGGCAAGGAAATAT
AAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCCCGTCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGCTATGATCGGCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAAATAATATTGGATTTATGTAATTCGTAGGGAAGGGCATATAATGTTTTCCAACTGTTTGACA
AAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATATTTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGGAGATTTTGGATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCAACAAAGGCTGTATCGGAATGTATCATTGAATATTTTCATAACTCAAAAATCAACGGACAAT
GTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGATCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCAGCACCATTGGCCATGGATGGAGGGAGTGCAGATTTGGGCAGTATAGCATAGGAAACGGGCGGCCAGCAATACAGAATGTTCACCTTTTTGTCGAATCACTTCACCTTTTCTACT
GTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCATGTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCATGTCGTTGTGCCTACTTCCCACCTGGATATGTATACAAAATATGGGAGTATAAATATTGCACTCGAACTATTTGGCCAGATGTTTGAATGGGATGCCATATCCTGGTAGTTATG
CTTGCTGGGTATTCGTTGAACGGGTTTATAGATGAATCCTTGAAGCTCTCAAGGAAAAATTCCTGAGAAACACATGGTCTCATGGAAGTAACGATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCTGCTGTAGGGTATAGCCTGATGGAATACAATGATTACTGGATTTACAGAGGTCGAGATTTTTG
ACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCTTGATGTATTCTCATAAAATGAATTGTGCCTAGTTTCCGTGCAATTTTCCAAGAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCATCTCTATGTTCTTGCTTTTTTT
>TRINITY_DN46802_c0_g1_i3 from sample A7 / Example unspliced isoform:CCAGAAGACAGATAAATTTTCTCAATCAGAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGgtaaatctagccctaagctagtatgtcatttaatttaggtttgtaggggagacattataagtaatataatcccagatttgtgctcataactctcattatttatttgactaaca
gGTAGTAAATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTTTAATATCAATTCACAAAACGCTTGGACTCGCTGGCGGAGGCAGTGTTAGGCAAGGAAATATAAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCCCGTCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGC
TATGATCGGCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAAATAATATTGGATTTATGTAATTCGTAGGGAAGGGCATATAATGTTTTCCAACTGTTTGACAAAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATATTTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGG
AGATTTTGGATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCAACAAAGGCTGTATCGGAATGTATCATTGAATATTTTCATAACTCAAAAATCAACGGACAATGTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGATCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCA
GCACCATTGGCCATGGATGGAGGGAGTGCAGATTTGGGCAGTATAGCATAGGAAACGGGCGGCCAGCAATACAGAATGTTCACCTTTTTGTCGAATCACTTCACCTTTTCTACTGTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCATGTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCA
TGTCGTTGTGCCTACTTCCCACCTGGATATGTATACAAAATATGGGAGTATAAATATTGCACTCGAACTATTTGGCCAGATGTTTGAATGGGATGCCATATCCTGGTAGTTATGCTTGCTGGGTATTCGTTGAACGGGTTTATAGATGAATCCTTGAAGCTCTCAAGGAAAAATTCCTGAGAAACACATGGTCTCATGGA
ATGTAACGATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCTGCTGTAGGTATAGCCTCATGGAATACGATGACTACTGGATTTACAGAGGTCGAGATTTTTGACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCGTAATGTATTCTCATAAAATGAATTGTGCCTAGTTTTTCCGTGCAAAGA
GGACAAATATTTTCCAACAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCATCTCTATGTTCTTGCTTTTTTTAGTTCCTGACGGGCATGTTTCTGCGAAGATTTTTCTTCTTTGAATTCATGACTGAAAACAAGGGAGTTCTCTTGTACCTGGTTTCTTCATTCACTGAGTCAACAAGATGTGAAGGAAGCAGTGAAC
TTTTTATGATGCATTGTGAACTGTTATTTGATAAACATGGAACAATGACATGGGTTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGGAGCTTTGAATATCAACAACAGAGTATTTTTCTAAGTTCATATTGGATTTGATCATTATGCTT
TGATTCATATGCATCAACTCCATAGGAAAACTTCCAGATTATATACAATTATTGTGGCAGATCTTCACTGATGTTCAGATTACAGAGAATCTTTCCTTTAAAATCTAGAGAAGGGATTCTGCAATAAACTATTGGGAAAGTTCTCTTCCAATAGAAAAACATTCTTAATTAACCTTTCCCAAGAAACTAGAGTTATTAAC
AATCCTC
Intron 4 GTAAATCTAG ... TTTAATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.17 | 17 | 0 | 7 |
| A2 | 50 | 7 | 0 | 7 |
| A3 | 40 | 6 | 2 | 4 |
| A4 | 0 | 2 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 9 | 0 | 0 |
| A7 | 33.33 | 14 | 0 | 7 |
| A8 | 40 | 9 | 1 | 6 |
| A9 | 23.53 | 13 | 0 | 4 |
| A10 | 47.62 | 11 | 0 | 10 |
>TRINITY_DN43890_c1_g3_i6 from sample A9 / Example spliced isoformCTCAACAATTAAGAAATTGGTGCCCAGAAGACAGATAAATTTTCTCAATCAGAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGGTAGTAAATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTTTAATATCAATTCACAAAACGCTTGGACTCGCTGGCGGA
GGCAGTGTTAGGCAAGGAAATATAAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCCCGTCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGCTATGATCGGCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAAATAATATTGGATTTATGTAATTCGTAGGGAAGGGCATA
TAATGTTTTCCAACTGTTTGACAAAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATATTTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGGAGATTTTGGATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCAACAAAGGCTGTATCGGAATGTATCATTGAATATTTTCA
TAACTCAAAAATCAACGGACAATGTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGATCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCAGCACCATTGGCCATGGATGGAGGGAGTGCAGATTTGGGCAGTATAGCATAGGAAACGGGCGGCCAGCAATACAGAATGTTCACCTTTTTGT
CGAATCACTTCACCTTTTCTACTGTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCATGTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCATGTCGTTGTGCCTACTTCCAACCTGGATATGTATACACAATATGGGAGTATAAATATTGCACTCGAACTATTTGGCCAGATGTTTGAATGG
GATGCCATATCCTGGTAGTTATGCTTGCTGGGTGTTCGTTGAACGGGTTTATAGATGAATCCTTGAAGCTCTCAAGGAAAAATTCCTGAGAAACACATGGTCTCATGGAATGTAACGATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCTGCTGTAGGTATAGCCTCATGGAATACGATGACTACTGG
ATTTACAGAGGTCGAGATTTTTGACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCGTAATGTATTCTCATAAAATGAATTGTGCCTAGTTTTTCCGTGCAAAGAGGACAAATATTTTCCAACAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCATCTCTATGTTCTTGCTTTTTTTAGGTATGTTTATTTTAT
TTTATTTTTACTATTATGATGCTTTCCCACATTTATCGTTGGTATCTCTCTTAAACCCATCAACATAGACTAATATGTCTTATCCATGAAGATTTGAATTAAACACCTACCTGCACAGAACTATCCAAATACCTGATAACATCGCTGACACCTGGTTAAAATAGCCAAATACCTGATAACATTGCTGGCAACTGGTTGAA
ATAACCCAAATACCTGATAACATTGCTGGCAACTGGTTGAAATAACTTCTTGGGCTATATAAGGTTTCATCATCATGGTAACTGTGATTAACTCAGAATTGCTATAAACTACGATCTGTGCATATGTGTATCTGCTTGTGCTTGGAATTTTAGAGGCAATCCCTAGGACAGGCAAACAAAGATTTAATTTATATTTTAGA
GAATAATACATGTTTTAATTTATATTTTAGAGGATAATACATAAAACATTTATTGATTACAACGCCCTATTTTATTCAGATAATAACAAATAATAGAAACATGGATGCAGGCCTAACGTAAAATTAACATTTGATGCCTAATTTATGTTGAAAACTAAAACAATCTTGATATTGATAATTGTT
>TRINITY_DN43890_c1_g3_i5 from sample A9 / Example unspliced isoform:CTCAACAATTAAGAAATTGGTGCCCAGAAGACAGATAAATTTTCTCAATCAGAGAGTGGAAGAATGAACTTGTTTATTCAGCGGTAGAAAAATAACTAGCTGTGAGATTGgtaaatctagccctaagctattatgtcatttaatttagGTAGTAAATGGAAAATAGATCCATCCTTTTGCCATGCATCAAGAATTTGGTT
TAATATCAATTCACAAAACGCTTGGACTCGCTGGCGGAGGCAGTGTTAGGCAAGGAAATATAAGAATCTTGCAGAGGCAAGCATGACCATGTCTTGGGATTTCCCCGTCAGGCAACATGAGGGTTTAAAAAAATTGCAATTTGTGGCTATGATCGGCTAGAGGGTTTCATATTGCAATGATGTGCAGGGTTTGGAAGAAA
ATAATATTGGATTTATGTAATTCGTAGGGAAGGGCATATAATGTTTTCCAACTGTTTGACAAAATGTCTAAAAGAAATGCTAGCATAGAGGCGTAATGGAAATATTTTTGATAACCTTTGCAAGGAAAAGTAATACCCTCGCGCTGGAGATTTTGGATGCCGTTGACAATGTGAAGATATGAGGGGATCCCTCTTGATCA
ACAAAGGCTGTATCGGAATGTATCATTGAATATTTTCATAACTCAAAAATCAACGGACAATGTAATTCTTGCAAAGGGAAGTTTATACATCCCACGGCAGATAGATCAGGTGTGGCTGTCACAGCGTTGGATTCTAAACCTCTTGCAGCACCATTGGCCATGGATGGAGGGAGTGCAGATTTGGGCAGTATAGCATAGGA
AACGGGCGGCCAGCAATACAGAATGTTCACCTTTTTGTCGAATCACTTCACCTTTTCTACTGTTCTTTCGGCATGGGCTGCCTCTCCATCTCTGCAACAGGGCATGTAGATCCATCAACAAATAATAAAGAGAGGGTGTGAACATCATGTCGTTGTGCCTACTTCCAACCTGGATATGTATACACAATATGGGAGTATAA
ATATTGCACTCGAACTATTTGGCCAGATGTTTGAATGGGATGCCATATCCTGGTAGTTATGCTTGCTGGGTGTTCGTTGAACGGGTTTATAGATGAATCCTTGAAGCTCTCAAGGAAAAATTCCTGAGAAACACATGGTCTCATGGAATGTAACGATGACAGGGTTTGGAGGAAGCCCTGAAACTGTTTGAGAAAATGCT
GCTGTAGGTATAGCCTCATGGAATACGATGACTACTGGATTTACAGAGGTCGAGATTTTTGACGAGGCCCTGATACTCTTTTCTGGAATTATTTCAGCGTAATGTATTCTCATAAAATGAATTGTGCCTAGTTTTTCCGTGCAAAGAGGACAAATATTTTCCAACAAGAAGTATGAGATCAGTGGAGTCAGCGCTATCAT
CTCTATGTTCTTGCTTTTTTTAGTTCCTGACGGGCATGTTTCTGCGAAGATTTTTCTTCTTTGAATTCATGACTGAAAACAAGGGAGTTCTCTTGTACCTGGTTTCTTCATTCACTGAGTCAACAAGATGTGAAGGAAGCAGTGAACTTTTTATGATGCATTGTGAACTGTTATTTGATAAACATGGAACAATGACATGG
GTTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGAAGCTTTGAATATCATAACATGGAACAATGAAATGGATTGGAGCTTTGAATATCAACAACAGAGTATTTTTCTAAGTTCATATTGGATTTGATCATTATGCTTTGATTCATATGCATCAACTCCATAGGAAAACTTCCAGATTATATACAATTATT
GTGGCAGATCTTCACTGATGTTCAGATTACAGAGAATCTTTCCTTTAAAATCTAGAGAAGGGATTCTGCAATAAACTATTGGGAAAGTTCTCTTCCAATAGAAAAACATTCTTAATTAACCTTTCCCAAGAAACTAGAGGTATTAACAATCCTCTGGTAATGATTTATTTATTGTGGCAGATCTTCACTGATATTCAGA