NA ----> NA
Intron 1 GTAAGCACTT ... ACTAACAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.95 | 2 | 2 | 15 |
| A2 | 65.56 | 8 | 16 | 14.5 |
| A3 | 66.67 | 4 | 6 | 10 |
| A4 | 66.67 | 2 | 6 | 2 |
| A5 | 78.57 | 3 | 13 | 9 |
| A6 | 67.82 | 14 | 33 | 26 |
| A7 | 62.09 | 29 | 54 | 41 |
| A8 | 66.91 | 23 | 47 | 46 |
| A9 | 68.85 | 19 | 29 | 55 |
| A10 | 70.09 | 16 | 34 | 41 |
>TRINITY_DN104465_c0_g1_i1 from sample A3 / Example spliced isoformGGGGGAATTAATGTAACCTACTGTTTGTGTTATCCAATAACTAAATTTACGAATGAATGAAAATTGGAAGCCTCACCTGTTGGATGGGATCCGACGATAGTCAGAGCTGCAGTCATGAATGGAATTTCTCTGAAATCGAACATGGGAACGAGAACGGGATTGCAGTTGAAACTTTCTTCCTTCCCCCAATTCTCGCCATC
TGCCTCTTCTTCTCAGCTTACATACTGCAATATTCACTTTCACCCATTTGTTTTGCGATGCAATCTCAATTCTAAATCTACTTCACACACCAATTCCCATTCGCTTACTGTCAATAAACCCAAGAGGGATTCCAGCGTTAATATTCCTTCTGGTTTTATCCACACTAATTCAACGGTGGTTACAAATTCTGCACGGGGAA
ATGACAGCATTACAAATCTCCATGAACCAGATGATAAGCATCTAAAGCAAGCAGGTTCGGATGGTCAAGGAAACGAACAAGACATGAAAGTAAGTGAACCGTTTAACAATAGAAGAAGAATCAATGGAAATTTAGGACATATCTCAAGCAGCAACAGCAAGGGTGAGCGGGAAGATGAAATGTCTTTGGGTAATGATGAA
GTGCAAGAGTCAGCTGCATACGAGAGTTTCCTTGCGGGTGAAACTGACTTTCTTGATCTGGCTAAGCAGTCAGAAATTGTGGGTGAGAAAAGTGCACAGCAGGAGTTGAAATCAGATTACGGGGAATTGATTGGAGGGAAATCGCGAAAGCATGGTGGAAATCAAAAGAGTTTGAAATTGAATAAAAATGCTAATTCTGA
TAAAGAGGTGGAGTCCGAGTCCAAGTCCAAGAATAGTAGGCAGGCGGTAAAGAGGTCAAATGTAATTGCCAAGCAAGTGATCAGCAAGACCTCTGCACTTAGCATGGGGTTTGTTTCCCAGCTTTGGGTCGACACAACATCTTGGACTGTTGAAGTGGTAGAGATCAGGCCAAGCTTGCTATCTGGAGAAATGGAGAGAA
TTTTTTTGGAGGAATTATGTCAAGTAGGAGATGTCATACTTGTTGAGGATGAAAACATGTTGGATAATGAACCGACAATGCTTGGGCTAGATTCTCTGGTTGGTTATGATATTGTAACAGAAGATAGATATTACCTTGGAAAGGTTCGTGATTACAACTTCAATATCAACTTGGGGAATGTCTCATATCTGGTGTTCGAT
TCCTTTGGCATTTCTTTCATTCCTGCAAGTGTGGGTCTTTGGGAAGCTCCAAATATGCATGCAAATGCATGGAATGATGCTATGGTGAGGAAATCAAATTTCAGAAGCAAGGATTATGTACGACACAATAGAATGGGCGACGAACTTGAAAAAGAGTTGAAGCTATTGTCCAGGAAACAGAAGTCAAATAAGGGTTTGGG
TAAAAGATCAACAATCAAGGAAGCCAAGGTCAAAGATGAATGGGAGCCACCATTGGATTATTAAGCAAATGAATCACAGGTGTTTTCTGTACAATTATATCACATGAAGAAAGCAACCTTCCTTTGAGTTTTCAATTATGTATCATTTTATTCCAAGGATGGTTTTCTTATATAACTTTGAAATTAGATAGTTTTCCTTA
AAAACTTCTTGAGTGTGTGAGAGAGGTGCATGCTGTCTAATATATTTTTTCAATTTCTGGCATAGCCACTCTTTTAGAACATATTAGTGCTTCTTGATTGATCAGCTACGAAGATCAGGTGAATTCTCTCATGAGAATATCTTTGGGAGTTACGACCGTCGTCGGTGTTTTGATCCCTGAAAAAGGCATTTTCAATTAAT
ATATAAGATAGATAATTACTCTCCTATTTTGAGAGTAACAGTAAATTAAAA
>TRINITY_DN104465_c0_g1_i4 from sample A3 / Example unspliced isoform:GGGGGAATTAATGTAACCTACTGTTTGTGTTATCCAATAACTAAATTTACGAATGAATGAAAATTGGAAGCCTCACCTGTTGGATGGGATCCGACGATAGTCAGAGCTGCAGTCATGAATGGAATTTCTCTGAAATCGAACATGGGAACGAGAACGGGATTGCAGTTGAAACTTTCTTCCTTCCCCCAATTCTCGCCATC
TGCCTCTTCTTCTCAGCTTACATACTGCAATATTCACTTTCACCCATTTGTTTTGCGATGCAATCTCAATTCTAAATCTACTTCACACACCAATTCCCATTCGCTTACTGTCAATAAACCCAAGAGGGATTCCAGCGTTAATATTCCTTCTGGTTTTATCCACACTAATTCAACGGTGGTTACAAATTCTGCACGGGGAA
ATGACAGCATTACAAATCTCCATGAACCAGATGATAAGCATCTAAAGCAAGCAGGTTCGGATGGTCAAGGAAACGAACAAGACATGAAAGTAAGTGAACCGTTTAACAATAGAAGAAGAATCAATGGAAATTTAGGACATATCTCAAGCAGCAACAGCAAGGGTGAGCGGGAAGATGAAATGTCTTTGGGTAATGATGAA
GTGCAAGAGTCAGCTGCATACGAGAGTTTCCTTGCGGGTGAAACTGACTTTCTTGATCTGGCTAAGCAGTCAGAAATTGTGGGTGAGAAAAGTGCACAGCAGGAGTTGAAATCAGATTACGGGGAATTGATTGGAGGGAAATCGCGAAAGCATGGTGGAAATCAAAAGAGTTTGAAATTGAATAAAAATGCTAATTCTGA
TAAAGAGGTGGAGTCCGAGTCCAAGTCCAAGAATAGTAGGCAGGCGGTAAAGAGGTCAAATGTAATTGCCAAGCAAGTGATCAGCAAGACCTCTGCACTTAGCATGGGGTTTGTTTCCCAGCTTTGGGTCGACACAACATCTGTAGGAGATGTCATACTTGTTGAGGATGAAAACATGTTGGATAATGAACCGACAATGC
TTGGGCTAGATTCTCTGGTTGGTTATGATATTGTAACAGAAGATAGATATTACCTTGGAAAGGTTCGTGATTACAACTTCAATATCAACTTGGGGAATGTCTCATATCTGGTGTTCGATTCCTTTGGCATTTCTTTCATTCCTGCAAGTGTGgtaagcacttattctttgtctattgaagatgtggttgaagtttcctca
gacacaatagtagtgtgttgtggtgcaaattttcgggtgcaaagactaacaaagGGTCTTTGGGAAGCTCCAAATATGCATGCAAATGCATGGAATGATGCTATGGTGAGGAAATCAAATTTCAGAAGCAAGGATTATGTACGACACAATAGAATGGGCGACGAACTTGAAAAAGAGTTGAAGCTATTGTCCAGGAAACA
GAAGTCAAATAAGGGTTTGGGTAAAAGATCAACAATCAAGGAAGCCAAGGTCAAAGATGAATGGGAGCCACCATTGGATTATTAAGCAAATGAATCACAGGTGTTTTCTGTACAATTATATCACATGAAGAAAGCAACCTTCCTTTGAGTTTTCAATTATGTATCATTTTATTCCAAGGATGGTTTTCTTATATAACTTT
GAAATTAGATAGTTTTCCTTAAAAACTTCTTGAGTGTGTGAGAGAGGTGCATGCTGTCTAATATATTTTTTCAATTTCTGGCATAGCCACTCTTTTAGAACATATTAGTGCTTCTTGATTGATCAGCTACGAAGATCAGGTGAATTCTCTCATGAGAATATCTTTGGGAGTTACGACCGTCGTCGGTGTTTTGATCCCTG
AAAAAGGCATTTTCAATTAATATATAAGATAGATAATTACTCTCCTATTTTGAGAGTAACAGTAAATTAAAA